Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1554 ATGGTATTAAGCATGAAGGTTCATCAGTTTGCACGTGGATTTTGGGACGAACCCTCCCTCTCCCTTGGCTGCAAACGCTTACGCCCTCTTGCCCCTAAACTTCAACAACATAACCAACATCCCACCTCCGATACCACCACCACCACGCTCACCTCTTTTGACCTTAAGACCTTCATCAAACCCGATTGCGGTCCCCGAAAACTCGGTTCCTCCCATGATCATAACAAAGATTCTTCCTCCTCTTCTTCTTCCCTCCAGACAGGAGTGGAAACGCATCCAGGAGGAACACGATGGAACCCAACCCAAGAACAGATAGGGATATTGGAGATGCTTTATAGTAGAGGAATGAGGACTCCTAATGCCCAACAGATTGAACACATCACTGCCCAGCTCGGCAACTATGGCAAGATCGAAGGAAAGAACGTTTTCTATTGGTTTCAGAATCATAAAGCCCGTGAGCGACAGAAACAAAAACGCAATAGTCTTGGTCTTCCACACTCTCCCAGAACTCCTCCCCCTCCTCCCATCATCCCTACTTTCCACACGGCTGAGGATGATAGTCCGTACAAGAGGAAGTGTTTGTACTGGGGGTTTGAGTGTTTGGTAGAAGATCATAATGGTATAATGTGTAAAAAGGAGGAAGGTCATGATAGGACTCTGGAGTTATTTCCTTTGCACCCAGAACGCAGATGA 693 47.47 MVLSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHNQHPTSDTTTTTLTSFDLKTFIKPDCGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPTFHTAEDDSPYKRKCLYWGFECLVEDHNGIMCKKEEGHDRTLELFPLHPERR 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28189291 28190186 - CrPI670011_08g015540.1 Cre08g1554 506472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1554 230 SUPERFAMILY Homeodomain-like 92 162 IPR009057 -
Cre08g1554 230 Gene3D - 95 162 - -
Cre08g1554 230 ProSiteProfiles 'Homeobox' domain profile. 91 156 IPR001356 GO:0003677(InterPro)
Cre08g1554 230 CDD homeodomain 96 157 IPR001356 GO:0003677(InterPro)
Cre08g1554 230 MobiDBLite consensus disorder prediction 64 102 - -
Cre08g1554 230 PANTHER WUSCHEL-RELATED HOMEOBOX 4 3 230 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
Cre08g1554 230 Pfam Homeodomain 96 155 IPR001356 GO:0003677(InterPro)
Cre08g1554 230 SMART HOX_1 93 160 IPR001356 GO:0003677(InterPro)
Cre08g1554 230 FunFam WUSCHEL-related homeobox 4 95 162 - -
Cre08g1554 230 MobiDBLite consensus disorder prediction 153 183 - -
Cre08g1554 230 MobiDBLite consensus disorder prediction 75 102 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1639 Cre-Chr4:34763826 Cre08g1554 Cre-Chr8:28189291 1.00E-19 dispersed
Cre06g2301 Cre-Chr6:30968370 Cre08g1554 Cre-Chr8:28189291 3.70E-22 dispersed
Cre08g1554 Cre-Chr8:28189291 Cre11g1113 Cre-Chr11:8651394 7.70E-22 dispersed
Cre08g1554 Cre-Chr8:28189291 Cre01g1402 Cre-Chr1:27295689 2.20E-24 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54244 PF00046 Homeodomain 9.80E-19 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1554 - - - 0.0