Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1559 ATGGTACCACCATATGCGCTTGATTCTCTTTATTGCTCAGAGGAGCACTGGGAGGACGACGACGACCAAGAAGAAAGGGGTTTTCATGAGCAACCTTACTCTAATTTAACAACCGAATCGAGTTCTCCGATTCTGGCAGTGGCAGAGCAGGATCTGTTTTGGGAAAACGATGAACTAAGTTCTCTGTTCTCAAGAGAGAAGCCTAATGAACTGTTTAAAACCATTCAGATTGACCCTTCTCTTGCTGTCGCTCGACGAAGCGCCGTCGAATGGATGCTGAAGGTTAATGCCCATTACTCTTTCTCTGCTCTCACTGCGGTTCTCGCCGTCGATTACTTGGATCGGTTTCTGACCTGTTTTCATTTTCAAAGAGACAAGCCATGGATGTCTCAGCTTGCTGCGGTTGCTTGTATCTCTCTTGCTGCCAAAGTAGAGGAGACCCAAGTCCCTCTTTTATTGGACCTACAAGTGGAATACAGTAGTTATCTGTTTGAAGCTAAGACCATTAAGAAAATGGAGCTTCTTGTGCTCTCTACGCTTCAATGGCGGATGAATCCTGTTACCCCATTTTCTTTTGTGGATTATATCTCAAGGAGGCTTGGATTCAAGGACCATATCTGCTGGGAAATTCTTTGGCAGTGTGAACGAACTATTCTCTCTGTTATTTTAGAGTCAGATTTCATGTCCTTTCTTCCTTCTGTAATGGCCACCGCCACAATGCTGCACGTTTTCAAAGCTATGGAAGAACCCCACCTCAGCGTTGAATACGATTCCCAGCTTCTTAACATCCTCGGAATCGACAAGGGGAATGTGGAGGAATGCTGTAAACTGATCTCAAATACATCTAGAAGAAACGGCAACCAATTCATGAAACGTAAATTTGGGTCGATTCCGGGCAGCCCGAACGGCGTGATGGACGTGTCATTCAGCTACGATAGCTCGAACGACTCGTGGTCAGTGGCTTCGTCGGTTTCATCTTCGCCAGAGCCTTTAACTAAGAAGAAGAACAGAGCATATGGATCGGTGTCTGGGGATGGCGAAACATTTAGAACCCTCTCTTAA 1062 45.67 MVPPYALDSLYCSEEHWEDDDDQEERGFHEQPYSNLTTESSSPILAVAEQDLFWENDELSSLFSREKPNELFKTIQIDPSLAVARRSAVEWMLKVNAHYSFSALTAVLAVDYLDRFLTCFHFQRDKPWMSQLAAVACISLAAKVEETQVPLLLDLQVEYSSYLFEAKTIKKMELLVLSTLQWRMNPVTPFSFVDYISRRLGFKDHICWEILWQCERTILSVILESDFMSFLPSVMATATMLHVFKAMEEPHLSVEYDSQLLNILGIDKGNVEECCKLISNTSRRNGNQFMKRKFGSIPGSPNGVMDVSFSYDSSNDSWSVASSVSSSPEPLTKKKNRAYGSVSGDGETFRTLS 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28237832 28239226 + CrPI670011_08g015590.1 Cre08g1559 506477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1559 353 CDD CYCLIN_AtCycD-like_rpt1 84 182 - -
Cre08g1559 353 Pfam Cyclin, C-terminal domain 187 295 IPR004367 -
Cre08g1559 353 CDD CYCLIN_AtCycD-like_rpt2 187 278 - -
Cre08g1559 353 Pfam Cyclin, N-terminal domain 83 185 IPR006671 -
Cre08g1559 353 PANTHER CYCLINS 51 276 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cre08g1559 353 Gene3D - 186 276 - -
Cre08g1559 353 Gene3D - 70 185 - -
Cre08g1559 353 SMART Cyclin_C_2 187 313 IPR004367 -
Cre08g1559 353 SMART cyclin_7 90 178 IPR013763 -
Cre08g1559 353 ProSitePatterns Cyclins signature. 85 116 IPR048258 -
Cre08g1559 353 SUPERFAMILY Cyclin-like 169 283 IPR036915 -
Cre08g1559 353 MobiDBLite consensus disorder prediction 322 353 - -
Cre08g1559 353 FunFam D3-type cyclin 78 185 - -
Cre08g1559 353 SUPERFAMILY Cyclin-like 54 185 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1465 Cre-Chr4:33446872 Cre08g1559 Cre-Chr8:28237832 1.20E-45 dispersed
Cre05g1199 Cre-Chr5:11627247 Cre08g1559 Cre-Chr8:28237832 1.20E-75 dispersed
Cre08g1559 Cre-Chr8:28237832 Cre10g1170 Cre-Chr10:24034506 5.30E-30 dispersed
Cre02g0981 Cre-Chr2:7216459 Cre08g1559 Cre-Chr8:28237832 7.60E-67 wgd
Cre04g1332 Cre-Chr4:32140629 Cre08g1559 Cre-Chr8:28237832 1.20E-66 wgd
Cre05g2211 Cre-Chr5:33809489 Cre08g1559 Cre-Chr8:28237832 1.40E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1559 K14505 - csv:101205442 585.489