Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1561 ATGACTTTATTAAAACTATCAATCTTACTATGTACAATGTTATTTGGCCCTTCCCTTTCAGGGGCTACTTCTCCTAAGAACATATTCATCCTCGCTGGTCAGAGCAATATGGCTGGTCGAGGTGGGGTTGAGAAAAATTTAAAGGGAGAGCTTGAGTGGGATGGATTGATCCCACCAGAATGTCAATCTGATTCATCCATCCTACGATTAAACCCTGAGCGCCAATGGGAGATAGCACGAGAGCCTCTCCATGAGGGGATCGACATCAACAAGACAGTTGGGATTGGTCCGGGAATGTCATTTGCTCACCAGCTACTAGCTAAAGCCGGGCCAAATGTAGGTGTTGTCGGTTTAGTTCCTTGTGCTAGAGGTGGCACTTTAATTGAACAATGGATTAAAAATCCTAGCAATCCTAATGCAACTTTTTACCAAAACTTCATTGAACGAATCAAAGCATCAGATAAAGATGGTGGAGTTGTGCGTGCTCTTTTTTGGTTCCAAGGTGAAAGCGATGCAGCTATGAATGACACTGCTATGAGATACAAAGACAACCTAAAGAATTTCTTCACCGACATCCGCAATGATATAAAACCTAGATTTTTACCCATCATTGTTGTTAAAATAGCCCTCTATGACTTTTTTATGAAGCACGATACTCATAATCTGCCCGCAGTGAGGGCGGCAGAAGATGCAGTCAGCAAGGAGCTACCACACGTGGTGACCATTGACGCTTTGAAATTACCTTTAAACTTTGAGACACATGAAGGCTTCAACAAAGATCATGGTCATTTTAATACCACAATGGAAATTATTGTGGGGGCTACTTCTCCTAAGAACATATTCATCCTCGCTGGCCAGAGCAATATGGCTGGTCGAGGTGGGGTTGAGAAAAATTTAAAGGGAGAGCTTGAGTGGGATGGATTGATCCCACCAGAATGTCAATCTGATTCATCCATCCTACGATTAAACCCTGAGCGCCAATGGGAGATAGCACAAGAGCCTCTCCATGAGGGGATCGACATCAACAAGACAGTTGGGATTGGTCCAGGAATGTCATTTGCTCACCAACTACTAGCTAAAGCAGGGCCAAATGTAGGTGTTGTCGGTTTAGTTCCTTGTGCTAGAGGTGGCACTTTAATTGAACAATGGATTAAAAATCCTAGCAATCCTAATGTGGTGCGTGCTCTTTTCTGGTTCCAAGGTGAAAGCGATGCTGCTATGAATGACACTGCTATGAGATACAAAGACAACCTAAAGAATTTCTTCACCGACATCCGCAATGATATAAAACCTAGATTTTTACCCATCATTGTTGTTAAAATAGCCCTCTATGACTTTTTTATGAAGCACGATACTCATAATCTGCCAGCAGTGAGGGCGGCAGAAGATGCAGTCAGCAAGGAGCTACCACACGTGGTGACCATTGACGCTTTGAAATTACCTTTAAACTTTGAGACACATGAAGGCTTCAACAAAGATCATGGCCATTTTAATACCACAATGGAAATTATTGTGGGTAAATGGTTGGCTGATACCTACCTCTCCCATTATGGTCATTTACTCTAA 1566 42.66 MTLLKLSILLCTMLFGPSLSGATSPKNIFILAGQSNMAGRGGVEKNLKGELEWDGLIPPECQSDSSILRLNPERQWEIAREPLHEGIDINKTVGIGPGMSFAHQLLAKAGPNVGVVGLVPCARGGTLIEQWIKNPSNPNATFYQNFIERIKASDKDGGVVRALFWFQGESDAAMNDTAMRYKDNLKNFFTDIRNDIKPRFLPIIVVKIALYDFFMKHDTHNLPAVRAAEDAVSKELPHVVTIDALKLPLNFETHEGFNKDHGHFNTTMEIIVGATSPKNIFILAGQSNMAGRGGVEKNLKGELEWDGLIPPECQSDSSILRLNPERQWEIAQEPLHEGIDINKTVGIGPGMSFAHQLLAKAGPNVGVVGLVPCARGGTLIEQWIKNPSNPNVVRALFWFQGESDAAMNDTAMRYKDNLKNFFTDIRNDIKPRFLPIIVVKIALYDFFMKHDTHNLPAVRAAEDAVSKELPHVVTIDALKLPLNFETHEGFNKDHGHFNTTMEIIVGKWLADTYLSHYGHLL 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28250665 28254891 + CrPI670011_08g015610.1 Cre08g1561 506479

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1561 521 PANTHER ESTERASE, PUTATIVE (DUF303)-RELATED 21 273 IPR052940 -
Cre08g1561 521 SUPERFAMILY SGNH hydrolase 27 273 - -
Cre08g1561 521 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 278 514 IPR005181 -
Cre08g1561 521 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 26 273 IPR005181 -
Cre08g1561 521 Gene3D SGNH hydrolase 24 276 IPR036514 -
Cre08g1561 521 Gene3D SGNH hydrolase 277 518 IPR036514 -
Cre08g1561 521 SUPERFAMILY SGNH hydrolase 279 518 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1561 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1561 Cre-Chr8:28250665 Cre08g1562 Cre-Chr8:28258676 6.90E-135 tandem
Cre03g1136 Cre-Chr3:11296283 Cre08g1561 Cre-Chr8:28250665 4.80E-146 transposed
Cre08g0639 Cre-Chr8:19317735 Cre08g1561 Cre-Chr8:28250665 1.00E-65 transposed
Cre10g1452 Cre-Chr10:28352196 Cre08g1561 Cre-Chr8:28250665 8.80E-132 transposed
Cre02g0988 Cre-Chr2:7315354 Cre08g1561 Cre-Chr8:28250665 1.80E-44 wgd
Cre05g2213 Cre-Chr5:33822030 Cre08g1561 Cre-Chr8:28250665 4.30E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g715 . Blo12g00972 . Bda03g00197 . Bpe04g00169 Bma04g00150 . . Cmo12g00515 . . . . . . Cpe07g00500 Bhi04g00386 . . . Hepe03g0729 . Lcy13g2109 Cla08g01593 Cam08g2093 Cec08g1674 Cco08g1805 Clacu08g1778 . Cre08g1561 . . . Cone20ag0211 . Csa04g02447 . Cme03g02074 . . . . . Bpe05g00378 . . . . . Cma12g00572 . . . . . . . . . . . . . . . . . . . Lsi08g01499 Csa02g01923 Chy07g00162 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000128 0 5 0 0 0 8 1 8 7 3 6 7 11 6 8 12 7 1 11 7 5 24 17 10 14 13 7 4 12 0 214