Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1567 ATGGCCGCGGCAGATAACTGTGTCCGTGTCACTCGTGCTTCCAAGAAGAGAGCTGCGGCGGCCGCCGTGGTCGAGGGCCAATCCGCCAATAAAAAGCGGGTGGTTCTTGGAGAGCTTTCCAACATTCAGAATGTTAATGGGTCAGTGGCCCCACAGAAGAGGAAGGCCAAGTCCCAGATGACTAAATGCAAGCCTAAGAAGAGAGCGAAGGTTGGTGTTGCTCCAACAATGAAGACGACGGTTGTTTCTGAAGATAATGATCCCAAGTTGACCGTTGATGATATTTTGGACGACCCAGAAATGAAGGGGCCTTATTCATCGGATATTTATGCTTATCTTCGCAAAATGGAGGCGGAACCAAAAAGAAGGCCGATTCCAAATTACATAGAGAAGATTCAGACGGATGTAAGTGCTAATATGAGAGGGGTTTTGGTTGACTGGATGGTTGAGGTAGCAGAGGAATACAAGCTTGGCTCCGATACTCTGTATCTATCCATCTCTTACCTCGATAGGTTCTTATCAATGAACATCCTCAGTAGGCAAAGGCTCCAATTGTTGGGGGTTTCTTCAATGCTTATTGCCTCGAAGTATGAAGAGATCACCCCTCCACATGTGGAGGATTTCTGTTACATAACAGATAATACTTACAGAAGGGATGAGGTTGTGAAGATGGAAGCTGATATACTTAAGTCTCTGAACTTTGAAATGGGAAATCCTACTGCCAAGACATTCTTAAGGAGGTTCACTAATATTGCTCAAGAAGATTTCAAAATACCAAATCTGCAGTTGGAGTTTCTTGGTTATTACCTTGCCGAGCTTAGCTTATTGGACTACAATTTTGTGAAGTTCTTGCCTTCTTTGGTTGCTGCCTCTGTCGTATTTCTTGCAAAATTTATCATCCGACCAAAGCTGCATCCTTGGGGTCCAAACATGCAACAATACACAGGCTACAAGCCAGCTGATCTAAGGCCATGTGTGATTCTGTTACATGATCTGTATATGGCCAGAAGAGGGGGGTCTCTGATAGCTGTGAGAGAAAAATACAAGCTACATAGGTTCAAATGTGTTGCAATGATGCCTTCACCTCCCGAGATACCGTTTTCATATTTTGAAGAAGCTTAG 1122 44.21 MAAADNCVRVTRASKKRAAAAAVVEGQSANKKRVVLGELSNIQNVNGSVAPQKRKAKSQMTKCKPKKRAKVGVAPTMKTTVVSEDNDPKLTVDDILDDPEMKGPYSSDIYAYLRKMEAEPKRRPIPNYIEKIQTDVSANMRGVLVDWMVEVAEEYKLGSDTLYLSISYLDRFLSMNILSRQRLQLLGVSSMLIASKYEEITPPHVEDFCYITDNTYRRDEVVKMEADILKSLNFEMGNPTAKTFLRRFTNIAQEDFKIPNLQLEFLGYYLAELSLLDYNFVKFLPSLVAASVVFLAKFIIRPKLHPWGPNMQQYTGYKPADLRPCVILLHDLYMARRGGSLIAVREKYKLHRFKCVAMMPSPPEIPFSYFEEA 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28289464 28291277 - CrPI670011_08g015670.1 Cre08g1567 506485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1567 373 Gene3D - 124 237 - -
Cre08g1567 373 PANTHER CYCLINS 86 349 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cre08g1567 373 SUPERFAMILY Cyclin-like 97 236 IPR036915 -
Cre08g1567 373 SMART Cyclin_C_2 239 362 IPR004367 -
Cre08g1567 373 CDD CYCLIN_AtCycA-like_rpt2 239 353 - -
Cre08g1567 373 Pfam Cyclin, N-terminal domain 108 236 IPR006671 -
Cre08g1567 373 Gene3D - 108 358 - -
Cre08g1567 373 PIRSF Cyclin_A_B_D_E 1 367 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cre08g1567 373 FunFam Cyclin A1 226 358 - -
Cre08g1567 373 SMART cyclin_7 146 230 IPR013763 -
Cre08g1567 373 SMART cyclin_7 243 331 IPR013763 -
Cre08g1567 373 FunFam Mitotic cyclin 6 124 224 - -
Cre08g1567 373 ProSitePatterns Cyclins signature. 141 172 IPR048258 -
Cre08g1567 373 Pfam Cyclin, C-terminal domain 239 361 IPR004367 -
Cre08g1567 373 SUPERFAMILY Cyclin-like 239 364 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0548 Cre-Chr8:18186605 Cre08g1567 Cre-Chr8:28289464 1.50E-78 dispersed
Cre08g1231 Cre-Chr8:25516459 Cre08g1567 Cre-Chr8:28289464 4.00E-67 dispersed
Cre08g1567 Cre-Chr8:28289464 Cre09g0228 Cre-Chr9:2391492 3.60E-77 dispersed
Cre02g1013 Cre-Chr2:7741902 Cre08g1567 Cre-Chr8:28289464 3.40E-80 wgd
Cre05g2222 Cre-Chr5:33883535 Cre08g1567 Cre-Chr8:28289464 2.80E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1567 K06627 - csv:101206145 697.197