Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1567 ATGGCCGCGGCAGATAACTGTGTCCGTGTCACTCGTGCTTCCAAGAAGAGAGCTGCGGCGGCCGCCGTGGTCGAGGGCCAATCCGCCAATAAAAAGCGGGTGGTTCTTGGAGAGCTTTCCAACATTCAGAATGTTAATGGGTCAGTGGCCCCACAGAAGAGGAAGGCCAAGTCCCAGATGACTAAATGCAAGCCTAAGAAGAGAGCGAAGGTTGGTGTTGCTCCAACAATGAAGACGACGGTTGTTTCTGAAGATAATGATCCCAAGTTGACCGTTGATGATATTTTGGACGACCCAGAAATGAAGGGGCCTTATTCATCGGATATTTATGCTTATCTTCGCAAAATGGAGGCGGAACCAAAAAGAAGGCCGATTCCAAATTACATAGAGAAGATTCAGACGGATGTAAGTGCTAATATGAGAGGGGTTTTGGTTGACTGGATGGTTGAGGTAGCAGAGGAATACAAGCTTGGCTCCGATACTCTGTATCTATCCATCTCTTACCTCGATAGGTTCTTATCAATGAACATCCTCAGTAGGCAAAGGCTCCAATTGTTGGGGGTTTCTTCAATGCTTATTGCCTCGAAGTATGAAGAGATCACCCCTCCACATGTGGAGGATTTCTGTTACATAACAGATAATACTTACAGAAGGGATGAGGTTGTGAAGATGGAAGCTGATATACTTAAGTCTCTGAACTTTGAAATGGGAAATCCTACTGCCAAGACATTCTTAAGGAGGTTCACTAATATTGCTCAAGAAGATTTCAAAATACCAAATCTGCAGTTGGAGTTTCTTGGTTATTACCTTGCCGAGCTTAGCTTATTGGACTACAATTTTGTGAAGTTCTTGCCTTCTTTGGTTGCTGCCTCTGTCGTATTTCTTGCAAAATTTATCATCCGACCAAAGCTGCATCCTTGGGGTCCAAACATGCAACAATACACAGGCTACAAGCCAGCTGATCTAAGGCCATGTGTGATTCTGTTACATGATCTGTATATGGCCAGAAGAGGGGGGTCTCTGATAGCTGTGAGAGAAAAATACAAGCTACATAGGTTCAAATGTGTTGCAATGATGCCTTCACCTCCCGAGATACCGTTTTCATATTTTGAAGAAGCTTAG 1122 44.21 MAAADNCVRVTRASKKRAAAAAVVEGQSANKKRVVLGELSNIQNVNGSVAPQKRKAKSQMTKCKPKKRAKVGVAPTMKTTVVSEDNDPKLTVDDILDDPEMKGPYSSDIYAYLRKMEAEPKRRPIPNYIEKIQTDVSANMRGVLVDWMVEVAEEYKLGSDTLYLSISYLDRFLSMNILSRQRLQLLGVSSMLIASKYEEITPPHVEDFCYITDNTYRRDEVVKMEADILKSLNFEMGNPTAKTFLRRFTNIAQEDFKIPNLQLEFLGYYLAELSLLDYNFVKFLPSLVAASVVFLAKFIIRPKLHPWGPNMQQYTGYKPADLRPCVILLHDLYMARRGGSLIAVREKYKLHRFKCVAMMPSPPEIPFSYFEEA 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28289464 28291277 - CrPI670011_08g015670.1 Cre08g1567 506485

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1567 373 Gene3D - 124 237 - -
Cre08g1567 373 PANTHER CYCLINS 86 349 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cre08g1567 373 SUPERFAMILY Cyclin-like 97 236 IPR036915 -
Cre08g1567 373 SMART Cyclin_C_2 239 362 IPR004367 -
Cre08g1567 373 CDD CYCLIN_AtCycA-like_rpt2 239 353 - -
Cre08g1567 373 Pfam Cyclin, N-terminal domain 108 236 IPR006671 -
Cre08g1567 373 Gene3D - 108 358 - -
Cre08g1567 373 PIRSF Cyclin_A_B_D_E 1 367 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cre08g1567 373 FunFam Cyclin A1 226 358 - -
Cre08g1567 373 SMART cyclin_7 146 230 IPR013763 -
Cre08g1567 373 SMART cyclin_7 243 331 IPR013763 -
Cre08g1567 373 FunFam Mitotic cyclin 6 124 224 - -
Cre08g1567 373 ProSitePatterns Cyclins signature. 141 172 IPR048258 -
Cre08g1567 373 Pfam Cyclin, C-terminal domain 239 361 IPR004367 -
Cre08g1567 373 SUPERFAMILY Cyclin-like 239 364 IPR036915 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1567 K06627 - - csv:101206145 697.197
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0548 Cre-Chr8:18186605 Cre08g1567 Cre-Chr8:28289464 1.50E-78 dispersed
Cre08g1231 Cre-Chr8:25516459 Cre08g1567 Cre-Chr8:28289464 4.00E-67 dispersed
Cre08g1567 Cre-Chr8:28289464 Cre09g0228 Cre-Chr9:2391492 3.60E-77 dispersed
Cre02g1013 Cre-Chr2:7741902 Cre08g1567 Cre-Chr8:28289464 3.40E-80 wgd
Cre05g2222 Cre-Chr5:33883535 Cre08g1567 Cre-Chr8:28289464 2.80E-131 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g693 . Blo12g00976 Bda01g00581 Bda03g00194 Bpe02g00444 Bpe04g00165 Bma04g00147 Bma01g02257 Cmo05g00159 Cmo12g00518 Cma01g01803 Cma09g00270 Car01g01408 Car12g00532 Sed10g1978 Cpe06g00185 Cpe07g00503 Bhi04g00390 Tan02g0995 Cmetu01g1482 . Hepe08g1310 . Lcy13g2114 Cla08g01600 Cam08g2100 Cec08g1681 Cco08g1812 Clacu08g1785 . Cre08g1567 . . Cone17ag0869 Cone20ag0217 Lsi04g01508 Csa04g02456 . Cme03g02080 . . . Bda01g01560 . Bpe05g00036 . Bma05g00047 . Cmo01g01859 Cmo09g00266 Cma12g00577 Cma05g00158 Car05g00137 Car09g00224 Cpe11g00133 Cpe02g00206 Bhi09g03262 . . . Hepe01g1808 . . Cla05g02086 Cam05g2238 Cec05g2258 Cco05g2298 Clacu05g2234 Cmu05g2098 Cre05g2223 Lsi08g01505 Csa02g01916 Chy07g00171 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g2344 . 1 291 Core Cell Cycle Gene Families AT3G48750 86.3 1.5e-150 529.3
Cre04g0711 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.5 1.0e-95 347.1
Cre11g2295 . 11 307 Core Cell Cycle Gene Families AT3G48750 53.0 3.7e-93 338.6
Cre04g0711 . 1 305 Core Cell Cycle Gene Families AT3G54180 84.8 5.1e-154 540.8
Cre11g2295 . 11 309 Core Cell Cycle Gene Families AT3G54180 66.0 1.0e-117 420.2
Cre05g2344 . 1 293 Core Cell Cycle Gene Families AT3G54180 53.9 5.1e-93 338.2
Cre04g0711 . 1 305 Core Cell Cycle Gene Families AT2G38620 71.5 2.9e-123 438.3
Cre11g2295 . 11 309 Core Cell Cycle Gene Families AT2G38620 57.5 3.1e-93 338.6
Cre11g2295 . 1 307 Core Cell Cycle Gene Families AT1G76540 84.7 2.5e-156 548.5
Cre04g0711 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.3 1.0e-117 420.2
Cre05g2344 . 1 290 Core Cell Cycle Gene Families AT1G76540 53.7 1.0e-93 340.5
Cre11g2295 . 8 307 Core Cell Cycle Gene Families AT1G20930 89.0 4.9e-160 560.8
Cre04g0711 . 1 303 Core Cell Cycle Gene Families AT1G20930 67.1 3.8e-120 428.3
Cre05g2344 . 1 290 Core Cell Cycle Gene Families AT1G20930 55.7 5.9e-97 351.3
Cre02g2717 . 57 571 Core Cell Cycle Gene Families AT5G10270 77.4 1.1e-219 759.6
Cre10g1554 . 23 484 Core Cell Cycle Gene Families AT5G10270 77.3 1.8e-209 725.7
Cre03g1910 . 840 1158 Core Cell Cycle Gene Families AT5G10270 51.6 1.1e-97 354.4
Cre05g1117 . 123 439 Core Cell Cycle Gene Families AT5G10270 54.7 2.5e-97 353.2
Cre08g0070 . 137 453 Core Cell Cycle Gene Families AT5G10270 53.0 2.5e-97 353.2
Cre05g0708 . 105 421 Core Cell Cycle Gene Families AT5G10270 52.9 4.2e-97 352.4
Cre03g0691 . 93 409 Core Cell Cycle Gene Families AT5G10270 53.2 1.2e-96 350.9
Cre11g0557 . 150 466 Core Cell Cycle Gene Families AT5G10270 52.1 4.7e-96 349.0
Cre02g2078 . 193 509 Core Cell Cycle Gene Families AT5G10270 52.6 4.0e-95 345.9
Cre02g1945 . 101 419 Core Cell Cycle Gene Families AT5G10270 50.4 2.2e-93 340.1
Cre01g1537 . 119 437 Core Cell Cycle Gene Families AT5G10270 50.1 1.6e-91 334.0
Cre02g2077 . 128 444 Core Cell Cycle Gene Families AT5G10270 50.6 2.0e-91 333.6
Cre02g2717 . 121 570 Core Cell Cycle Gene Families AT5G64960 72.5 4.9e-177 617.8
Cre10g1554 . 87 537 Core Cell Cycle Gene Families AT5G64960 71.5 5.6e-173 604.4
Cre02g2078 . 247 509 Core Cell Cycle Gene Families AT5G64960 53.6 1.3e-81 300.8
Cre05g1117 . 177 439 Core Cell Cycle Gene Families AT5G64960 54.3 2.3e-81 300.1
Cre03g0691 . 147 409 Core Cell Cycle Gene Families AT5G64960 52.9 5.1e-81 298.9
Cre03g1910 . 894 1158 Core Cell Cycle Gene Families AT5G64960 50.7 8.6e-81 298.1
Cre11g0557 . 204 466 Core Cell Cycle Gene Families AT5G64960 52.9 1.1e-80 297.7
Cre08g0070 . 191 453 Core Cell Cycle Gene Families AT5G64960 53.2 1.5e-80 297.4
Cre02g2077 . 182 444 Core Cell Cycle Gene Families AT5G64960 53.2 4.3e-80 295.8
Cre05g0708 . 159 421 Core Cell Cycle Gene Families AT5G64960 51.8 4.3e-80 295.8
Cre06g2316 . 4 414 Core Cell Cycle Gene Families AT1G73690 74.0 4.1e-172 601.3
Cre06g2316 . 12 342 Core Cell Cycle Gene Families AT1G66750 77.7 2.3e-155 545.4
Cre06g2316 . 8 415 Core Cell Cycle Gene Families AT1G18040 75.5 4.3e-174 607.8
Cre04g0167 . 32 505 Core Cell Cycle Gene Families AT5G63610 74.8 4.7e-199 691.0
Cre11g0723 . 1 481 Core Cell Cycle Gene Families AT4G28980 62.8 2.8e-175 612.1
Cre08g0548 . 5 498 Core Cell Cycle Gene Families AT1G44110 56.6 2.5e-144 509.2
Cre09g0228 . 225 503 Core Cell Cycle Gene Families AT1G44110 55.2 1.5e-88 323.9
Cre05g1879 . 206 472 Core Cell Cycle Gene Families AT1G44110 55.1 6.4e-84 308.5
Cre05g2222 . 124 403 Core Cell Cycle Gene Families AT1G44110 52.5 1.2e-82 304.3
Cre08g1567 . 85 373 Core Cell Cycle Gene Families AT1G44110 50.2 1.8e-78 290.4
Cre08g1231 . 305 566 Core Cell Cycle Gene Families AT1G44110 53.4 3.2e-75 279.6
Cre09g0228 . 224 499 Core Cell Cycle Gene Families AT1G77390 51.4 3.3e-77 286.2
Cre05g1879 . 206 472 Core Cell Cycle Gene Families AT1G77390 52.1 1.2e-74 277.7
Cre05g2222 . 129 401 Core Cell Cycle Gene Families AT1G77390 50.5 1.7e-73 273.9
Cre08g1231 . 305 562 Core Cell Cycle Gene Families AT1G77390 50.8 1.4e-67 254.2
Cre05g1879 . 16 484 Core Cell Cycle Gene Families AT5G25380 53.9 5.3e-120 428.3
Cre08g1231 . 138 578 Core Cell Cycle Gene Families AT5G25380 51.0 1.0e-102 370.9
Cre09g0228 . 223 503 Core Cell Cycle Gene Families AT5G25380 63.7 6.1e-100 361.7
Cre08g0548 . 216 491 Core Cell Cycle Gene Families AT5G25380 55.1 3.7e-81 299.3
Cre05g2222 . 128 396 Core Cell Cycle Gene Families AT5G25380 51.7 5.2e-75 278.9
Cre02g1013 . 119 343 Core Cell Cycle Gene Families AT5G25380 52.2 8.1e-60 228.4
Cre05g1879 . 3 422 Core Cell Cycle Gene Families AT5G11300 51.1 1.6e-94 343.6
Cre08g0548 . 207 436 Core Cell Cycle Gene Families AT5G11300 55.7 2.0e-68 256.9
Cre05g2222 . 124 340 Core Cell Cycle Gene Families AT5G11300 55.3 8.1e-62 235.0
Cre08g1567 . 92 307 Core Cell Cycle Gene Families AT5G11300 52.3 3.4e-60 229.6
Cre02g1013 . 119 285 Core Cell Cycle Gene Families AT5G11300 52.4 2.2e-43 173.7
Cre09g0228 . 189 503 Core Cell Cycle Gene Families AT1G15570 65.0 3.0e-118 422.5
Cre08g0548 . 188 495 Core Cell Cycle Gene Families AT1G15570 52.1 2.2e-81 300.1
Cre02g1013 . 119 347 Core Cell Cycle Gene Families AT1G15570 51.3 9.1e-59 224.9
Cre09g0228 . 4 503 Core Cell Cycle Gene Families AT1G80370 51.4 4.7e-119 425.2
Cre08g0548 . 217 496 Core Cell Cycle Gene Families AT1G80370 55.7 1.0e-81 301.2
Cre05g2222 . 124 401 Core Cell Cycle Gene Families AT1G80370 51.4 9.9e-77 284.6
Cre08g1567 . 92 370 Core Cell Cycle Gene Families AT1G80370 52.0 2.4e-75 280.0
Cre02g1013 . 119 348 Core Cell Cycle Gene Families AT1G80370 51.9 3.5e-58 223.0
Cre08g1567 . 5 372 Core Cell Cycle Gene Families AT5G43080 58.5 9.1e-115 410.6
Cre05g2222 . 30 406 Core Cell Cycle Gene Families AT5G43080 57.3 2.2e-113 406.0
Cre08g0548 . 218 498 Core Cell Cycle Gene Families AT5G43080 51.2 1.6e-79 293.5
Cre05g1879 . 208 477 Core Cell Cycle Gene Families AT5G43080 53.3 2.3e-78 289.7
Cre09g0228 . 226 503 Core Cell Cycle Gene Families AT5G43080 51.3 6.4e-76 281.6
Cre08g1567 . 1 372 Core Cell Cycle Gene Families AT1G47210 59.4 6.7e-124 441.0
Cre05g2222 . 30 406 Core Cell Cycle Gene Families AT1G47210 54.8 3.7e-114 408.7
Cre09g0228 . 226 498 Core Cell Cycle Gene Families AT1G47210 51.8 8.0e-77 284.6
Cre05g1879 . 208 477 Core Cell Cycle Gene Families AT1G47210 51.8 5.2e-76 282.0
Cre08g1231 . 302 568 Core Cell Cycle Gene Families AT1G47210 50.2 7.2e-70 261.5
Cre05g2222 . 124 404 Core Cell Cycle Gene Families AT1G47220 59.1 1.3e-94 343.6
Cre08g1567 . 78 372 Core Cell Cycle Gene Families AT1G47220 56.9 7.0e-93 337.8
Cre05g1879 . 208 474 Core Cell Cycle Gene Families AT1G47220 51.3 2.6e-71 266.2
Cre05g2222 . 30 406 Core Cell Cycle Gene Families AT1G47230 57.1 1.8e-116 416.4
Cre08g1567 . 1 372 Core Cell Cycle Gene Families AT1G47230 57.4 5.6e-115 411.4
Cre02g1013 . 66 351 Core Cell Cycle Gene Families AT1G47230 53.8 9.4e-78 287.7
Cre08g0548 . 219 500 Core Cell Cycle Gene Families AT1G47230 50.5 1.0e-76 284.3
Cre09g0228 . 228 498 Core Cell Cycle Gene Families AT1G47230 52.0 1.4e-73 273.9
Cre05g1879 . 209 474 Core Cell Cycle Gene Families AT1G47230 51.7 1.0e-71 267.7
Cre04g0641 . 1 449 Core Cell Cycle Gene Families AT4G37490 53.8 1.0e-115 414.1
Cre04g0641 . 1 342 Core Cell Cycle Gene Families AT5G06150 53.6 7.5e-82 301.2
Cre02g2568 . 102 304 Core Cell Cycle Gene Families AT5G06150 63.2 5.4e-64 241.9
Cre04g1707 . 170 344 Core Cell Cycle Gene Families AT5G06150 54.3 1.1e-45 181.0
Cre04g0641 . 6 406 Core Cell Cycle Gene Families AT3G11520 57.6 4.2e-105 378.6
Cre04g1707 . 171 397 Core Cell Cycle Gene Families AT3G11520 52.4 7.5e-62 235.0
Cre02g2568 . 14 411 Core Cell Cycle Gene Families AT2G26760 52.5 1.6e-107 386.7
Cre04g1707 . 8 440 Core Cell Cycle Gene Families AT2G17620 60.0 5.1e-128 454.9
Cre11g2261 . 153 552 Core Cell Cycle Gene Families AT2G17620 52.2 2.1e-105 379.8
Cre04g1707 . 24 397 Core Cell Cycle Gene Families AT4G35620 58.7 2.3e-103 372.9
Cre11g2261 . 146 509 Core Cell Cycle Gene Families AT4G35620 53.4 6.5e-90 328.2
Cre02g2568 . 137 363 Core Cell Cycle Gene Families AT4G35620 50.9 4.4e-54 209.1
Cre11g2261 . 117 552 Core Cell Cycle Gene Families AT1G20610 63.1 9.7e-143 503.8
Cre04g1707 . 1 440 Core Cell Cycle Gene Families AT1G20610 57.0 1.5e-122 436.8
Cre11g2261 . 117 449 Core Cell Cycle Gene Families AT1G76310 63.5 1.2e-103 373.6
Cre04g1707 . 1 336 Core Cell Cycle Gene Families AT1G76310 53.5 5.8e-82 301.6
Cre02g2568 . 133 300 Core Cell Cycle Gene Families AT1G76310 52.4 6.4e-41 165.2
Cre01g0408 . 12 329 Core Cell Cycle Gene Families AT1G70210 65.3 1.0e-110 397.1
Cre05g2672 . 1 327 Core Cell Cycle Gene Families AT1G70210 63.0 3.1e-104 375.6
Cre04g1465 . 41 335 Core Cell Cycle Gene Families AT2G22490 54.6 1.2e-82 303.9
Cre05g1199 . 57 339 Core Cell Cycle Gene Families AT4G34160 55.6 8.6e-79 291.2
Cre08g1559 . 47 322 Core Cell Cycle Gene Families AT4G34160 50.5 4.9e-66 248.8
Cre02g0981 . 59 292 Core Cell Cycle Gene Families AT4G34160 52.6 2.8e-61 233.0
Cre05g2211 . 71 318 Core Cell Cycle Gene Families AT5G67260 51.4 2.2e-64 243.4
Cre04g1465 . 56 275 Core Cell Cycle Gene Families AT5G65420 60.3 1.2e-69 260.4
Cre08g1092 . 98 297 Core Cell Cycle Gene Families AT5G65420 55.9 1.3e-60 230.3
Cre04g1465 . 54 233 Core Cell Cycle Gene Families AT5G10440 59.1 8.0e-56 214.2
Cre08g1092 . 93 271 Core Cell Cycle Gene Families AT5G10440 54.1 1.3e-50 196.8
Cre04g1278 . 90 358 Core Cell Cycle Gene Families AT5G27620 63.6 3.2e-92 335.5
Cre01g1204 . 1 86 Core Cell Cycle Gene Families AT2G27960 91.9 8.0e-44 172.9
Cre02g2473 . 1 86 Core Cell Cycle Gene Families AT2G27960 90.7 1.2e-42 169.1
Cre01g1204 . 1 83 Core Cell Cycle Gene Families AT2G27970 85.5 1.5e-39 158.7
Cre02g2473 . 1 76 Core Cell Cycle Gene Families AT2G27970 92.1 4.3e-39 157.1
Cre05g2865 . 684 1702 Core Cell Cycle Gene Families AT3G12280 72.0 0.0e+00 1416.0
Cre09g0578 . 2 486 Core Cell Cycle Gene Families AT1G02970 60.1 3.5e-160 562.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001075 3 10 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 4 2 2 2 2 3 3 1 81