Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1586 ATGGAGGCTTTGGGAGGCTTTTCCGATGGGGAATGGGAATCTTTCGCCGCCATGTTCTCATCGGAAGAGGTAAATCAGAGCCATATTCCGATGGCTAATTATTCCAATGAGCTTCAATTGCCCAACAATGGCGGCAGTAGTTGGTTCTATTCATTGGATGCTTTTGTTCCTAATTTACAGAGTAATTGTAAACAGGACATAAGGAGCTGTAGTAGCTGCAGTACTACCGATAATTCTAGTGCTTCAGTTTTAATTCCGAATTCGAGTGATTATTTTATGCCAATTGATGAGAGGAATTTTGGGTCTTCGTTTTTTTCTGATGTTTTAATTGAGGAAGTCGATAATGCTCTCGCCCCCGCCGCCGCTGAAGGGGAAGATTCCAGCATGGAGAGATTCATTGAGAATAATGTACTACTGGGTAGCCACCCGCCGCCGTCGCCGGTCGTAGATTCCAACGGTGCCAGAAATAAACCAATTGTATTGAAGAGGAAAGTCAATGACGGGGACATTTCTGATAATCAGAAGAAAAAATCTCGGATCTCCTCACACGGGCAGAAGAAGAAGAAAACAGAGGAGAGGAGAAGAGGGGAAAGTGTAGAGGAAGAAGGGAATACAGGTGGAGCATCAGAAGGACAAAGCTCCATTAGTTACAGTTCCGATCAGGAAGAGAATGGTTCCGAGGAGGGAAACGGCGGCGGCTTCAACAGGAAAAGCAGAGCAAGCAGAGGATCGGCCACCGATCCCCAAAGCCTCTACGCCAGAAAACGAAGAGAAAGAATCAATGAGCGATTGAGAATCTTACAGAAACTTGTTCCCAATGGAACCAAGGTTGATATCAGTACCATGCTTGAAGAAGCAGTTCATTATGTCAAGTTTTTGCAGCTCCAAATCAAGTTATTGAGCTCAGATGAGATGTGGATGTTTGCTCCTTTGGCTTACAATGGAATCGACCTTGGCCTTCACCAGAAGCTCTCTCCATTTCTATCACACTGA 993 45.02 MEALGGFSDGEWESFAAMFSSEEVNQSHIPMANYSNELQLPNNGGSSWFYSLDAFVPNLQSNCKQDIRSCSSCSTTDNSSASVLIPNSSDYFMPIDERNFGSSFFSDVLIEEVDNALAPAAAEGEDSSMERFIENNVLLGSHPPPSPVVDSNGARNKPIVLKRKVNDGDISDNQKKKSRISSHGQKKKKTEERRRGESVEEEGNTGGASEGQSSISYSSDQEENGSEEGNGGGFNRKSRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDEMWMFAPLAYNGIDLGLHQKLSPFLSH 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28404131 28406272 + CrPI670011_08g015860.1 Cre08g1586 506504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1586 330 Gene3D - 246 309 IPR036638 GO:0046983(InterPro)
Cre08g1586 330 MobiDBLite consensus disorder prediction 205 228 - -
Cre08g1586 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 244 293 IPR011598 GO:0046983(InterPro)
Cre08g1586 330 SMART finulus 250 299 IPR011598 GO:0046983(InterPro)
Cre08g1586 330 FunFam Basic helix-loop-helix transcription factor 245 302 - -
Cre08g1586 330 MobiDBLite consensus disorder prediction 161 201 - -
Cre08g1586 330 MobiDBLite consensus disorder prediction 137 156 - -
Cre08g1586 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 244 306 IPR036638 GO:0046983(InterPro)
Cre08g1586 330 Pfam Helix-loop-helix DNA-binding domain 254 294 IPR011598 GO:0046983(InterPro)
Cre08g1586 330 CDD bHLH_AtIND_like 245 307 - -
Cre08g1586 330 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 61 313 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cre08g1586 330 MobiDBLite consensus disorder prediction 161 256 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1586 Cre-Chr8:28404131 Cre10g1196 Cre-Chr10:24562922 1.90E-37 dispersed
Cre03g1159 Cre-Chr3:11919237 Cre08g1586 Cre-Chr8:28404131 1.70E-18 transposed
Cre02g1031 Cre-Chr2:8027448 Cre08g1586 Cre-Chr8:28404131 5.80E-36 wgd
Cre05g2237 Cre-Chr5:33985444 Cre08g1586 Cre-Chr8:28404131 2.90E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54248 PF00010 HLH 9.80E-09 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1586 - - - 0.0