Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g1586 | ATGGAGGCTTTGGGAGGCTTTTCCGATGGGGAATGGGAATCTTTCGCCGCCATGTTCTCATCGGAAGAGGTAAATCAGAGCCATATTCCGATGGCTAATTATTCCAATGAGCTTCAATTGCCCAACAATGGCGGCAGTAGTTGGTTCTATTCATTGGATGCTTTTGTTCCTAATTTACAGAGTAATTGTAAACAGGACATAAGGAGCTGTAGTAGCTGCAGTACTACCGATAATTCTAGTGCTTCAGTTTTAATTCCGAATTCGAGTGATTATTTTATGCCAATTGATGAGAGGAATTTTGGGTCTTCGTTTTTTTCTGATGTTTTAATTGAGGAAGTCGATAATGCTCTCGCCCCCGCCGCCGCTGAAGGGGAAGATTCCAGCATGGAGAGATTCATTGAGAATAATGTACTACTGGGTAGCCACCCGCCGCCGTCGCCGGTCGTAGATTCCAACGGTGCCAGAAATAAACCAATTGTATTGAAGAGGAAAGTCAATGACGGGGACATTTCTGATAATCAGAAGAAAAAATCTCGGATCTCCTCACACGGGCAGAAGAAGAAGAAAACAGAGGAGAGGAGAAGAGGGGAAAGTGTAGAGGAAGAAGGGAATACAGGTGGAGCATCAGAAGGACAAAGCTCCATTAGTTACAGTTCCGATCAGGAAGAGAATGGTTCCGAGGAGGGAAACGGCGGCGGCTTCAACAGGAAAAGCAGAGCAAGCAGAGGATCGGCCACCGATCCCCAAAGCCTCTACGCCAGAAAACGAAGAGAAAGAATCAATGAGCGATTGAGAATCTTACAGAAACTTGTTCCCAATGGAACCAAGGTTGATATCAGTACCATGCTTGAAGAAGCAGTTCATTATGTCAAGTTTTTGCAGCTCCAAATCAAGTTATTGAGCTCAGATGAGATGTGGATGTTTGCTCCTTTGGCTTACAATGGAATCGACCTTGGCCTTCACCAGAAGCTCTCTCCATTTCTATCACACTGA | 993 | 45.02 | MEALGGFSDGEWESFAAMFSSEEVNQSHIPMANYSNELQLPNNGGSSWFYSLDAFVPNLQSNCKQDIRSCSSCSTTDNSSASVLIPNSSDYFMPIDERNFGSSFFSDVLIEEVDNALAPAAAEGEDSSMERFIENNVLLGSHPPPSPVVDSNGARNKPIVLKRKVNDGDISDNQKKKSRISSHGQKKKKTEERRRGESVEEEGNTGGASEGQSSISYSSDQEENGSEEGNGGGFNRKSRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDEMWMFAPLAYNGIDLGLHQKLSPFLSH | 330 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 28404131 | 28406272 | + | CrPI670011_08g015860.1 | Cre08g1586 | 506504 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g1586 | 330 | Gene3D | - | 246 | 309 | IPR036638 | GO:0046983(InterPro) | |
Cre08g1586 | 330 | MobiDBLite | consensus disorder prediction | 205 | 228 | - | - | |
Cre08g1586 | 330 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 244 | 293 | IPR011598 | GO:0046983(InterPro) | |
Cre08g1586 | 330 | SMART | finulus | 250 | 299 | IPR011598 | GO:0046983(InterPro) | |
Cre08g1586 | 330 | FunFam | Basic helix-loop-helix transcription factor | 245 | 302 | - | - | |
Cre08g1586 | 330 | MobiDBLite | consensus disorder prediction | 161 | 201 | - | - | |
Cre08g1586 | 330 | MobiDBLite | consensus disorder prediction | 137 | 156 | - | - | |
Cre08g1586 | 330 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 244 | 306 | IPR036638 | GO:0046983(InterPro) | |
Cre08g1586 | 330 | Pfam | Helix-loop-helix DNA-binding domain | 254 | 294 | IPR011598 | GO:0046983(InterPro) | |
Cre08g1586 | 330 | CDD | bHLH_AtIND_like | 245 | 307 | - | - | |
Cre08g1586 | 330 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 61 | 313 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Cre08g1586 | 330 | MobiDBLite | consensus disorder prediction | 161 | 256 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre08g1586 | Cre-Chr8:28404131 | Cre10g1196 | Cre-Chr10:24562922 | 1.90E-37 | dispersed | |
Cre03g1159 | Cre-Chr3:11919237 | Cre08g1586 | Cre-Chr8:28404131 | 1.70E-18 | transposed | |
Cre02g1031 | Cre-Chr2:8027448 | Cre08g1586 | Cre-Chr8:28404131 | 5.80E-36 | wgd | |
Cre05g2237 | Cre-Chr5:33985444 | Cre08g1586 | Cre-Chr8:28404131 | 2.90E-41 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54248 | PF00010 | HLH | 9.80E-09 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g1586 | - | - | - | 0.0 |