Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1591 ATGTGGAAGGATATTAGAGATAGAGAAGCGGGAAAACTCCGCCCAAATTCTTTCGCAAATCGTGTTAAATCCGATCGAACCAGCTCTTTGCAACTTTCCAATCACAAGGACATTGTCTCTCCCCATAGAGGTTCCGTCAACTCACTTCAGGTTGATTTGACAGAGGGGAGATATTTGTTGTCTGGAGCATCAGATGCATCAGCTGCTGTTTTTGATATTCAACGTGCAACTCACTCCGAGGGTCTTATTGCAAAGCACCAATGCATTTTTGCAGTTGATAAGCAGCATGAACATGGACATCAATATGCAATATCCTCAGCCATATGGTATCCCGTTGATACTGGATTGTTTGTCACCGGCTCATATGATCATCACATTAATGTCTGGGATACAAATACAACTCAGGTGGTGGTGAATTTTAAATTGCCTGGAAAAGTTTATAGGACAGCCATGTCCTCTTTGGCAACATCACACATGCTGATTGCTGCTGGAACAGAAGATGTTCAAGTTCGCCTTTGTGATATTTCTTCTGGAGCATTTTCTCACACATTATCTGGACATCGTGATGGTGTAATGAGTGTAGCATGGTCAGCTTCTAGCGAGTGGGTTTTGATTACTGGAGGATGTGATGGAGCTATACGCTTTTGGGACATCAGACGAGCTGGATGCTTTCGTGTTCTAGATCAGTCTCAATCTCAGCTTGGGAGACGTCCCCCTATTTCAGGATGGACTGCAAATAAGCTCTCAACATCTAAGTCCCTCTTGGCCAGCCAAGGTTCAAATATGAAATCTCGCATACCTCATAAGAAACTAGCCAATGGAAATGCAACAAAGCCATCAGCCACAGGTAAACTGCCGGCTAAGGGATCCACAAGGCAGAGGCTACACCCAGGGCTTTTGTCCAGTCAGGATCGAGCAGTTTCTCACTATGGTGCTGTCACTGGATTAAAAGTAACTGGAGATGGCATGTACCTTCTCAGTGCAGGTTCTGATTCAAGGTTAAAGTTATGGGACGTTGAATCCGGGTGCAATACACTCGTGAATTATGAAACCATGCGGTTACAGACCAATAAACCATTGCAATTAGCCACATCTGAGGATTCAGCCCTTGTATTTGCCCCATGCATGGCGACTGTTAAAGCATTTGATATGTGGACAGGGAAGACATCCCTGACATTCAGCGGCCACTATGAAGGTGTGAACTGTTGCTGGTATAATTTCCCAGATCAGGAACTGTACACCGGTGGCAATGATAGGCAAATTCTCGTCTGGTCACCATCCCGAAACTCTACCGAACTGTGGACTCGCAGGATTGGGAATCGACTGCAGACAGGGATAACTGGAGCGACTGACTGTCGTCCAAAAGGAAGTTTGGTTTCAATGCTGATGCCATCCATCAGACTCTGCTCACCATGTACATAA 1422 45.29 MWKDIRDREAGKLRPNSFANRVKSDRTSSLQLSNHKDIVSPHRGSVNSLQVDLTEGRYLLSGASDASAAVFDIQRATHSEGLIAKHQCIFAVDKQHEHGHQYAISSAIWYPVDTGLFVTGSYDHHINVWDTNTTQVVVNFKLPGKVYRTAMSSLATSHMLIAAGTEDVQVRLCDISSGAFSHTLSGHRDGVMSVAWSASSEWVLITGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPISGWTANKLSTSKSLLASQGSNMKSRIPHKKLANGNATKPSATGKLPAKGSTRQRLHPGLLSSQDRAVSHYGAVTGLKVTGDGMYLLSAGSDSRLKLWDVESGCNTLVNYETMRLQTNKPLQLATSEDSALVFAPCMATVKAFDMWTGKTSLTFSGHYEGVNCCWYNFPDQELYTGGNDRQILVWSPSRNSTELWTRRIGNRLQTGITGATDCRPKGSLVSMLMPSIRLCSPCT 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28454490 28459328 - CrPI670011_08g015910.1 Cre08g1591 506509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1591 473 Gene3D - 1 428 IPR015943 GO:0005515(InterPro)
Cre08g1591 473 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 184 219 - -
Cre08g1591 473 Pfam WD domain, G-beta repeat 98 130 IPR001680 GO:0005515(InterPro)
Cre08g1591 473 Pfam WD domain, G-beta repeat 180 217 IPR001680 GO:0005515(InterPro)
Cre08g1591 473 Pfam WD domain, G-beta repeat 308 338 IPR001680 GO:0005515(InterPro)
Cre08g1591 473 Pfam WD domain, G-beta repeat 388 425 IPR001680 GO:0005515(InterPro)
Cre08g1591 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 347 IPR001680 GO:0005515(InterPro)
Cre08g1591 473 SUPERFAMILY WD40 repeat-like 39 429 IPR036322 GO:0005515(InterPro)
Cre08g1591 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 226 IPR001680 GO:0005515(InterPro)
Cre08g1591 473 MobiDBLite consensus disorder prediction 20 35 - -
Cre08g1591 473 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 1 431 IPR042238 GO:0000109(PANTHER)|GO:0000209(PANTHER)|GO:0006283(InterPro)|GO:0006283(PANTHER)|GO:0031464(PANTHER)|GO:0043161(PANTHER)
Cre08g1591 473 ProSitePatterns Trp-Asp (WD) repeats signature. 325 339 IPR019775 -
Cre08g1591 473 FunFam Transducin/WD40 repeat-like superfamily protein 2 264 - -
Cre08g1591 473 ProSitePatterns Trp-Asp (WD) repeats signature. 204 218 IPR019775 -
Cre08g1591 473 SMART WD40_4 85 130 IPR001680 GO:0005515(InterPro)
Cre08g1591 473 SMART WD40_4 177 217 IPR001680 GO:0005515(InterPro)
Cre08g1591 473 SMART WD40_4 32 72 IPR001680 GO:0005515(InterPro)
Cre08g1591 473 SMART WD40_4 300 338 IPR001680 GO:0005515(InterPro)
Cre08g1591 473 SMART WD40_4 386 425 IPR001680 GO:0005515(InterPro)
Cre08g1591 473 PRINTS G protein beta WD-40 repeat signature 325 339 IPR020472 -
Cre08g1591 473 PRINTS G protein beta WD-40 repeat signature 117 131 IPR020472 -
Cre08g1591 473 PRINTS G protein beta WD-40 repeat signature 204 218 IPR020472 -
Cre08g1591 473 FunFam Excision repair cross-complementation group 8 286 428 - -
Cre08g1591 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 393 425 IPR001680 GO:0005515(InterPro)
Cre08g1591 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 97 139 IPR001680 GO:0005515(InterPro)
Cre08g1591 473 MobiDBLite consensus disorder prediction 257 295 - -
Cre08g1591 473 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 97 133 - -
Cre08g1591 473 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 306 342 - -
Cre08g1591 473 MobiDBLite consensus disorder prediction 13 35 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1591 K10570 - - csv:101209203 865.914
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g648 . . . . . . . . . Cmo12g00539 . . . Car12g00543 . . Cpe07g00517 Bhi04g00418 Tan02g1734 Cmetu03g0611 . Hepe08g1335 . Lcy13g2133 Cla08g01622 Cam08g2124 Cec08g1709 Cco08g1833 Clacu08g1810 . Cre08g1591 . . Cone17ag0887 Cone20ag0234 . . . Cme03g02103 . . . . . . . . . . . Cma12g00599 . . . . . . . . . . . . . . . . . . . Lsi08g01528 Csa02g01894 Chy03g01592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007829 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 6 1 36