Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1606 ATGGAGGACGCCTACGCCAGATCTATCACTGAGGTATTGGATTTCTTTGGGGTTGATCCATCACAAGGTCTCACAGATGATCAGGTTTTACATCATGCTAAACTTTATGGAAAAAACTTGGTACCTGAGGAGAAAAGGGCCCCATTTTGGAAATTGGTTTTGAAGCAGTTTGATGATTTACTAGTGAAGATATTGATTGTTGCAGCAGTTGTTTCTTTCCTTTTGGCTTTGATAAATGGAGAGACAGGTGTAACAGCATTTTTGGAGCCTTCAGTAATTCTAATGATATTGGCTGCAAACGCAGCAGTCGGGGTGATTACGGAAACAAATGCTGAAAAGGCCCTTGTGGAACTACGGGCATACCAGGCAGATATTGCTACTGTGATGAGAAATGGTTGCTTTTCAATACTTCCAGCTACTGAGCTTGTTCCTGGCGATATTGTAGAAGTTGCTGTGGGGTGCAAAATTCCAGCTGATATGAGAATGATTGAGATGCTGACTAATCAGCTACGTGTTGATCAAGCAATTCTCACAGGTGAGAGTTGCTCTGTTGAAAAAGAGCTCGAGTCCACAACAGCAGCAAATGCTGTATATCAAGACAAGACAAATATTCTTTTTTCTGGTACAGTGGTGGTTGCTGGCAGGGCACGAGCTATTGTGGTAGGAGTTGGTGCAAATACTGCCATGGGCAATATACGAGATTCTATATTGCAAACGGATGATGAGGTGACACCGTTGAAAAAGAAGCTCGATGAATTTGGTACCTTCCTGGCCAAGGTTATTGCTGGAATTTGTGCACTAGTATGGATAGTGAACATTGGTCACTTTCGTGATCCTTCACATGGTGGGGTTTTGAGTGGTGCAATACATTACTTCAAGATTGCAGTTGCTCTTGCTGTTGCAGCTATTCCTGAAGGACTTCCTGCTGTTGTCACAACGTGTTTGGCTCTTGGCACCAAACGAATGGCACGTCTGAATGCAATTGTGAGGTCTTTGCCATCTGTTGAGACTTTAGGCTGCACTACTGTTATATGTAGTGACAAGACTGGAACTTTGACTACCAATATGATGTCCGTCTCAAAGATTTGTGTGGTCCATTCTGTTTTGCATGGTCCACAACTTTCGGAGTACAATGTCAGCGGTACAACATATGCTCCTGATGGTATTATTTTTGACAGCACGGGAGTACAGCTTGAGTTTCCAGCTCAATTGCCTTGTATTCTACATTTGGCCATGGGGTCTGCCCTCTGCAACGAGTCTACCTTGCAATATAACCCAGACAAGGGAAGCTACGAAAAAATTGGTGAATCAACTGAAGTAGCACTGCGTGTCTTTGCTGAAAAGGTTGGTCTTCCTGGTTTTACTTCTATGCCTTCTGCTCTAAATATGCTCAGCAAGCATGAGCGTGCATCCTATTGTAACCACCATTGGGAGAGCCAGTTCAAAAAGATTTCTGTATTGGAATTTTCTCGCAATCGCAAGATGATGAGCATTTTATGTAGCAGAAACCAGTCACATATCCTATTCTCCAAGGGTGCTCCTGAGAGCATTATTTCAAGATGCTCAAGCATCCTTTGTAATGAAGATGGTTCCACCAGTGTTTTAACTTCTACTATTCGCACTGAACTGGAAGCAAGATTTCAAAGTTTTGCAGGAAATGAAATGCTTAGGTGCCTGGCTATAGCATTCAAATTGCTTCCCTTGAGTCAGCAGAGTTTATCCTTTGATGATGAGCAAGATCTAACATTCATTGGGTTGGTTGGAATGCTTGATCCACCGAGAGAGGAAGTGAGAAATGCTATGCTTTCATGCATGACTGCTGGCATACGTGTTATAGTTGTAACTGGGGACAATAAGTCAACTGCTGAATCACTCTGTCGCAAGATTGGTGCTTTTGATCACTTGGTAGATCTAACTGGTCATTCTTACACTGCTTCCGAATTTGAAGAGCTACCTGCAATGCAACAAACAATGGCATTGCAACGAATGGCACTCTTCACCAGGGTTGAACCTTCTCACAAGAGAATGCTCGTGGAGGCCTTACAACATCAGAATGAAGTGGTTGCTATGACAGGCGATGGCGTCAATGATGCACCTGCACTGAAGAAAGCCGATATTGGAATTGCCATGGGTTCAGGAACAGCAGTTGCCAAGAGTGCTTCTGATATGGTCTTAGCTGATGACAATTTTGCTTCTATTGTTGCGGCTGTTGCAGAGGGCAGAGCTATTTACAATAATACTAAGCAGTTCATCAGATACATGATCTCTTCAAATATTGGTGAAGTAGTCTGTATATTTGTGGCAGCTGTTCTTGGAATACCAGAGACACTTGCCCCTGTGCAACTTCTTTGGGTCAACTTGGTCACTGATGGGTTGCCTGCAACTGCAATTGGATTTAACAAGCAAGACTCTGATGTAATGAAAGCTAAGCCTCGAAAGGTGAATGAAGCTGTGGTGACTGGGTGGTTGTTCTTTCGTTATTTGGTAATCGGAG 2494 43.22 MEDAYARSITEVLDFFGVDPSQGLTDDQVLHHAKLYGKNLVPEEKRAPFWKLVLKQFDDLLVKILIVAAVVSFLLALINGETGVTAFLEPSVILMILAANAAVGVITETNAEKALVELRAYQADIATVMRNGCFSILPATELVPGDIVEVAVGCKIPADMRMIEMLTNQLRVDQAILTGESCSVEKELESTTAANAVYQDKTNILFSGTVVVAGRARAIVVGVGANTAMGNIRDSILQTDDEVTPLKKKLDEFGTFLAKVIAGICALVWIVNIGHFRDPSHGGVLSGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVSKICVVHSVLHGPQLSEYNVSGTTYAPDGIIFDSTGVQLEFPAQLPCILHLAMGSALCNESTLQYNPDKGSYEKIGESTEVALRVFAEKVGLPGFTSMPSALNMLSKHERASYCNHHWESQFKKISVLEFSRNRKMMSILCSRNQSHILFSKGAPESIISRCSSILCNEDGSTSVLTSTIRTELEARFQSFAGNEMLRCLAIAFKLLPLSQQSLSFDDEQDLTFIGLVGMLDPPREEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDHLVDLTGHSYTASEFEELPAMQQTMALQRMALFTRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPETLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKAKPRKVNEAVVTGWLFFRYLVIG 831
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 28518293 28539683 + CrPI670011_08g016060.1 Cre08g1606 506524
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1606 831 SUPERFAMILY HAD-like 578 739 IPR036412 -
Cre08g1606 831 Pfam haloacid dehalogenase-like hydrolase 582 705 - -
Cre08g1606 831 Pfam Cation transport ATPase (P-type) 415 524 - -
Cre08g1606 831 FunFam Calcium-transporting ATPase, putative 210 341 - -
Cre08g1606 831 SMART Cation_ATPase_N_a_2 3 77 IPR004014 -
Cre08g1606 831 FunFam Calcium-transporting ATPase 355 592 - -
Cre08g1606 831 FunFam Sodium/potassium-transporting ATPase subunit alpha 584 730 - -
Cre08g1606 831 Gene3D - 342 735 IPR023214 -
Cre08g1606 831 Pfam Cation transporter/ATPase, N-terminus 5 72 IPR004014 -
Cre08g1606 831 Gene3D - 55 831 - -
Cre08g1606 831 Gene3D - 22 237 - -
Cre08g1606 831 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 831 IPR023298 -
Cre08g1606 831 NCBIfam HAD-IC family P-type ATPase 661 779 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cre08g1606 831 NCBIfam HAD-IC family P-type ATPase 92 367 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cre08g1606 831 SFLD C1.7: P-type atpase like 326 743 - -
Cre08g1606 831 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 687 831 - -
Cre08g1606 831 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 352 589 IPR023299 GO:0000166(InterPro)
Cre08g1606 831 ProSitePatterns E1-E2 ATPases phosphorylation site. 347 353 IPR018303 -
Cre08g1606 831 NCBIfam calcium-translocating P-type ATPase, SERCA-type 53 831 IPR005782 GO:0005388(InterPro)|GO:0006816(InterPro)|GO:0016020(InterPro)
Cre08g1606 831 PRINTS P-type cation-transporting ATPase superfamily signature 714 726 - -
Cre08g1606 831 PRINTS P-type cation-transporting ATPase superfamily signature 607 617 - -
Cre08g1606 831 PRINTS P-type cation-transporting ATPase superfamily signature 173 187 - -
Cre08g1606 831 PRINTS P-type cation-transporting ATPase superfamily signature 345 359 - -
Cre08g1606 831 PRINTS P-type cation-transporting ATPase superfamily signature 691 710 - -
Cre08g1606 831 PRINTS P-type cation-transporting ATPase superfamily signature 585 596 - -
Cre08g1606 831 Pfam Cation transporting ATPase, C-terminus 775 831 IPR006068 -
Cre08g1606 831 SFLD p-type atpase 326 743 IPR044492 -
Cre08g1606 831 Gene3D - 355 592 IPR023299 GO:0000166(InterPro)
Cre08g1606 831 FunFam Calcium-transporting ATPase 112 237 - -
Cre08g1606 831 PANTHER CALCIUM-TRANSPORTING ATPASE 8 831 - GO:0005388(PANTHER)|GO:0006874(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0070588(PANTHER)
Cre08g1606 831 Pfam E1-E2 ATPase 122 324 - -
Cre08g1606 831 PRINTS H+-transporting ATPase (proton pump) signature 663 679 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cre08g1606 831 PRINTS H+-transporting ATPase (proton pump) signature 722 747 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cre08g1606 831 PRINTS H+-transporting ATPase (proton pump) signature 691 707 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cre08g1606 831 SUPERFAMILY Calcium ATPase, transduction domain A 124 235 IPR008250 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1606 Cre-Chr8:28518293 Cre09g0700 Cre-Chr9:6774237 7.20E-86 dispersed
Cre03g0492 Cre-Chr3:3418191 Cre08g1606 Cre-Chr8:28518293 2.30E-193 transposed
Cre05g1920 Cre-Chr5:31375196 Cre08g1606 Cre-Chr8:28518293 1.80E-56 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1606 K05853 - csv:101211345 1574.68