Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1608 ATGCCGATGTACCAGCCTGCTACTTGGAGAGAAGGGGATCCGAAGCTCGTCGTCGGCTGCGGTGCGCAGATTCTAGATCTGGAAACTGTGGTCAAAGATGGGATTCTCGGCGGAGGCGGGGGGATAATCTGCGGCGGCGTTGGCGGTGGCGGTGGCGGTGGAGAGAAATTGGATCTGAAGGAGATGATTGAGGAGTTGGAATCGTCCATAGAGGTTCCATCGGTGTTCATTTGCCCAATCTCGCTCGAACCCATGCAAGATCCAGTGACCCTCTGTTCCGGGCAGACCTACGAGCGTTCCAACATTCTGAAATGGTTCTCTTTAGGGCATTTAACTTGTCCCACAACAATGCAAGAGCTTTGGGATGATTCCGTCACACCGAATCGGACTCTTCACCAGTTGATTCACACCTGGTTTTCGCAAAAGTACTTAGCATTGAAGAAGAGATCAGAGGATGTGCAGGGGAGAGTTTTAGAGCTTTTGGATTCGTTGAAGAAGGTCAAGGGTCAAGCTAGGGTTCAGTCCCTTAAAGATCTCCGACATGTCGTCACTACCCATTCCTCCGCCAAGAAGATGGTGGTCGACAACGGCGGTGTCGCTCTAATCTCTTCTCTTTTGGGTTCTTTCACTTCCCACGCAGTTGGGTCCGAAGCCGTGGGAATCCTTGTGAATATGGATCTCGATTCAGAGTTGAAGAAGAATCTGATTCAACCCACCAGAATTTCCCTAATTGCAGATATTTTAAACGAAGGGTCCATCGAAACCAAGATTAATTGCACGAAATTCATCAAGATGTTGATTGTGGGTGAGGATTTAAGAACAGAGAACGTTTCAAGTCTAAGTCTCCTCGTCGGATTGTTGAGAATGGTGAAGGATCAGAGATACTCAAATGGTGTAACCGCGGGACTCAGTTTACTCCGAACGCTCTGTTCAAACGAACAAATCAGGAAGCAACTCGTCAGCATCGGCGCCGTCGCGAAACTCGGCGGCGCCCTCTCTAACTTAAACGCCGATTGTTTGGAATCGGCGCTTTATATTCTCGACGTTTTGTCATCCCTTCCGGAAGGGAGATTAGCGTTGAAGAATTGTGAAGATACGATTAGAAATTTGGTGAAATTGTTGATGAAAGTATCAGAGATTTGTACTCAATTTGCGTTGTCGATTTTATGGGCGGTGTTTAAGCTAGCGCCGGAGGAATGTGCGATGCTGGCGGTGGAGGCTGGATTGGCGGCGAAATTGCTGCTTGTAATCCAAAGTGGGTGCAATCCAGAGCTGAAACAGAGATCTGCAGAGCTATTGAAATTGTGTAGTCTAAATTACCCCGATTCAATGTTCATTTCTAAATGTAAGCTTACGAGAACTATACAATAA 1371 47.48 MPMYQPATWREGDPKLVVGCGAQILDLETVVKDGILGGGGGIICGGVGGGGGGGEKLDLKEMIEELESSIEVPSVFICPISLEPMQDPVTLCSGQTYERSNILKWFSLGHLTCPTTMQELWDDSVTPNRTLHQLIHTWFSQKYLALKKRSEDVQGRVLELLDSLKKVKGQARVQSLKDLRHVVTTHSSAKKMVVDNGGVALISSLLGSFTSHAVGSEAVGILVNMDLDSELKKNLIQPTRISLIADILNEGSIETKINCTKFIKMLIVGEDLRTENVSSLSLLVGLLRMVKDQRYSNGVTAGLSLLRTLCSNEQIRKQLVSIGAVAKLGGALSNLNADCLESALYILDVLSSLPEGRLALKNCEDTIRNLVKLLMKVSEICTQFALSILWAVFKLAPEECAMLAVEAGLAAKLLLVIQSGCNPELKQRSAELLKLCSLNYPDSMFISKCKLTRTIQ 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28552026 28553396 + CrPI670011_08g016080.1 Cre08g1608 506526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1608 456 CDD RING-Ubox_PUB 73 125 IPR045210 -
Cre08g1608 456 Pfam U-box domain 72 142 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre08g1608 456 SUPERFAMILY ARM repeat 160 442 IPR016024 -
Cre08g1608 456 SMART Ubox_2 75 138 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre08g1608 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 144 IPR013083 -
Cre08g1608 456 ProSiteProfiles U-box domain profile. 71 145 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre08g1608 456 SUPERFAMILY RING/U-box 68 142 - -
Cre08g1608 456 Gene3D - 145 454 IPR011989 -
Cre08g1608 456 PANTHER WDSAM1 PROTEIN 68 449 IPR045185 GO:0061630(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2828 Cre-Chr5:38949712 Cre08g1608 Cre-Chr8:28552026 6.10E-164 dispersed
Cre08g1608 Cre-Chr8:28552026 Cre04g1187 Cre-Chr4:30496225 4.20E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1608 - - - 0.0