Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1612 ATGGCAATGCTGAATATGGCGGAAGATGGAGTTGGGTTTCAGTGTGAGGTACTTGAGAATGATCACGAGTTCACTGCCACTGAAATCGAAGAGCTTCTGTCACTCTTTCTAGCCAACGACGGGCCCCCAAGTCCCGGTTCCGATTCTCAGGGTTCGATGCGAACCTCGGCAACTTGTTCGACCAATGACGACGAGAGGAAGCTGCGGCGGATGATATCAAACCGGGAGTCGGCCCGGCGATCGCGGTGGAGGAAGAAGAGGCATTTGGAAGATCTGACTAATGAGGTGAATCGGTTGATGATCCAGAACCGGGAATTGAAGGAACGGCTCGGCCGGGTTTTGAACCACCGCCATGTGGTTTTGAGAGAAAATGATTGGTTGTGGATGGAGTCCGTTGGTCTTCGGGCCAGACTTTCGGATCTTTGCCGGATCTTGGCCGTCATGCAATAG 450 52.89 MAMLNMAEDGVGFQCEVLENDHEFTATEIEELLSLFLANDGPPSPGSDSQGSMRTSATCSTNDDERKLRRMISNRESARRSRWRKKRHLEDLTNEVNRLMIQNRELKERLGRVLNHRHVVLRENDWLWMESVGLRARLSDLCRILAVMQ 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28582932 28583381 + CrPI670011_08g016120.1 Cre08g1612 506530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1612 149 CDD bZIP_plant_GBF1 67 118 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1612 149 PANTHER BZIP TRANSCRIPTION FACTOR 44 38 148 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER)
Cre08g1612 149 SMART brlzneu 62 126 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1612 149 MobiDBLite consensus disorder prediction 43 59 - -
Cre08g1612 149 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 64 113 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1612 149 Coils Coil 89 109 - -
Cre08g1612 149 FunFam BZIP transcription factor 64 115 - -
Cre08g1612 149 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 69 84 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1612 149 SUPERFAMILY Leucine zipper domain 66 118 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1612 149 Pfam bZIP transcription factor 66 117 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1612 149 MobiDBLite consensus disorder prediction 37 65 - -
Cre08g1612 149 Gene3D - 64 117 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1612 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1612 Cre-Chr8:28582932 Cre09g1795 Cre-Chr9:36397507 4.00E-11 dispersed
Cre05g2824 Cre-Chr5:38929949 Cre08g1612 Cre-Chr8:28582932 5.20E-22 transposed
Cre04g1398 Cre-Chr4:32763492 Cre08g1612 Cre-Chr8:28582932 1.90E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g617 . . . . . . . . Cmo05g00132 . . . . . Sed10g1161 . . Bhi04g00450 Tan02g1701 Cmetu03g2266 . Hepe08g1348 . Lcy13g2150 Cla08g01637 Cam08g2141 Cec08g1728 Cco08g1848 Clacu08g1829 . Cre08g1612 . . Cone17ag0898 Cone20ag0240 . . . Cme03g02120 . . . Bda01g01640 . . . . . . . . Cma05g00127 Car05g00108 . Cpe11g00108 . . . . . . . . . . . . . . . Lsi08g01542 Csa02g01876 Chy03g01610 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003122 0 1 0 1 1 2 3 2 2 1 1 2 3 2 1 2 2 2 3 2 2 2 2 2 1 2 2 2 2 0 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54250 PF00170 bZIP_1 8.10E-11 CL0018 Cre TF