Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1616 ATGAAAATGGAGGTTACTTCTTCTGATCATCCTTACAATCAACACCATTCTCACTCTGCTTCAAATCCTTTCTACTTATCTCCTCATTTCAACCACAACAATACTGAAATCTTTTATGGAATTCCTGATAATTCCTCTCTTCACCATCACTCTGCTGCTGCTTCCCTCTCTGTAATGCCTCTGAAATCTGATGGCTCACTCTGTATTATGGAAGCCCTTTCAAGATCTCAAACCGAAGGGATGGTACCGAGTTCTTCACCGAAGCTTGAGGATTTTCTTGGTGGTGCAACAATGGGGAATCGAGGAGGCTATTTCAATCAAAATGCTGAATCTGAAACCGACAAGGAACATTCTTTGGACCTTCTTCACAGACCCATTAGACAAAATCAACAGATTTTAATTCAAAATTCAAATCAATACTATTCTGGGTTAGTTCCATCTTCCATTGGAATTGGAACTTGCGATCCCCAAATTCTTCCAGCTAATGACGACGAAATCCCTTGTCTTAGAAACTGGGTTTCTCGTTCTCACTACTCCGCTACACATAATACTCTGGAGCAGCATATTACCGGCGGCGCTCTTGTGAATGACGGAAGCGGTGGCGGCTCTGCTTCCATTGGCGGAATGAGCTGCGGGGAATTGCAGTCGTTGAGTTTGTCGATGAGTCCAGGTTCTCAATCGAGCTCTTTCACGGCTTCCGGCCAGATCTCCCCTACTGGAGGCGACGGCGGGGCCGTGGAAACTAAAAAAAGAGGCGCCGGAAAACTCTGCCAGAAACAACCCGTTCACCGCAAGTCCATTGATACTTTTGGCCAACGAACCTCCCAATATCGTGGCGTCACCAGACATAGATGGACCGGGAGATATGAAGCTCATCTGTGGGATAATAGTTGCAAGAAAGAAGGGCAAACCAGAAAAGGAAGACAAGTGTATCTTGGGGGATATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATCTTGCTGCCCTCAAGTACTGGGGACCCTCTACCCATATAAATTTTCCATTGGAAAATTATCAGACCGAATTAGAAGAAATGAAGAATATGAGCCGCCAGGAATATGTTGCCCACTTGAGAAGAAAAAGCAGTGGCTTTTCAAGGGGCGCTTCTGTTTTCCGTGGAGTCACAAGACATCACCAACATGGAAGATGGCAAGCAAGGATTGGTAGAGTTGCTGGAAACAAAGACCTTTATCTTGGGACATTTAGCACGCAAGAGGAAGCGGCTGAGGCTTATGACATAGCAGCAATCAAATTCCGCGGTGTAAATGCTGTCACCAACTTTGACATTTCCAGATATGATGTCGAGAAAATCATGGCTAGTAATACTCTACTGGCAGGCGAGCTGGCTAGAAGGAACAAGGACGTCGAACCAAGCAGTGATAGGACCGTCGTTCCCTACGACTCCTCGGTTGCGGCAAACAACAATGTCGGGATCGGGATTGGGATTGAAATCAATCCCGACGACAACGGTGCGAATGGGAATGGTAATGATTGGAAGATGGCATTGTATCAAAATCCATCACATCAACAACAGGTTTGTGTTGCGGAATCATCGGATCATCATCACAATAAATCCATGATCGTATCGGGAGGTTATCGAAACACTTCGTTTTCGATGGCATTGCAGGATTTGATTGGGATCGAATCGTTGAATGCTAGTACTCATGGGATTGAGGATGATGTGAGCAAACAAGTGACTCATTTTTCAAATTCGTCGTCGTTGGTGACGAGTTTGAGTAGCTCGAGAGAAGGTAGTCCTGATAAGACGAATCTGTCAATGCCGTTTGGAAAGCCCCCACCCTTGATGGCATCAAAGCTAATTGGTGCAACGAACGGGGTCGGAGTCGGAGTCGGTGCTTGGTACCCATCACCACAGCAGTTGAGGCCAACAGCGGCCATTTCAATGGCACATTTGCCTGTTTTTGCAACTTGGAATGACACTTAA 1968 45.78 MKMEVTSSDHPYNQHHSHSASNPFYLSPHFNHNNTEIFYGIPDNSSLHHHSAAASLSVMPLKSDGSLCIMEALSRSQTEGMVPSSSPKLEDFLGGATMGNRGGYFNQNAESETDKEHSLDLLHRPIRQNQQILIQNSNQYYSGLVPSSIGIGTCDPQILPANDDEIPCLRNWVSRSHYSATHNTLEQHITGGALVNDGSGGGSASIGGMSCGELQSLSLSMSPGSQSSSFTASGQISPTGGDGGAVETKKRGAGKLCQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASVFRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVEKIMASNTLLAGELARRNKDVEPSSDRTVVPYDSSVAANNNVGIGIGIEINPDDNGANGNGNDWKMALYQNPSHQQQVCVAESSDHHHNKSMIVSGGYRNTSFSMALQDLIGIESLNASTHGIEDDVSKQVTHFSNSSSLVTSLSSSREGSPDKTNLSMPFGKPPPLMASKLIGATNGVGVGVGAWYPSPQQLRPTAAISMAHLPVFATWNDT 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28644650 28647638 + CrPI670011_08g016160.1 Cre08g1616 506534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1616 655 ProSiteProfiles AP2/ERF domain profile. 378 436 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1616 655 SUPERFAMILY DNA-binding domain 275 344 IPR016177 GO:0003677(InterPro)
Cre08g1616 655 Gene3D AP2/ERF domain 378 438 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1616 655 Gene3D AP2/ERF domain 275 344 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1616 655 CDD AP2 377 438 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1616 655 MobiDBLite consensus disorder prediction 217 238 - -
Cre08g1616 655 FunFam AP2-like ethylene-responsive transcription factor ANT 275 344 - -
Cre08g1616 655 MobiDBLite consensus disorder prediction 217 258 - -
Cre08g1616 655 CDD AP2 275 342 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1616 655 Pfam AP2 domain 377 428 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1616 655 Pfam AP2 domain 276 334 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1616 655 MobiDBLite consensus disorder prediction 1 20 - -
Cre08g1616 655 SUPERFAMILY DNA-binding domain 377 438 IPR016177 GO:0003677(InterPro)
Cre08g1616 655 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 170 500 - -
Cre08g1616 655 PRINTS Ethylene responsive element binding protein signature 418 438 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1616 655 PRINTS Ethylene responsive element binding protein signature 277 288 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1616 655 SMART rav1_2 378 442 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1616 655 SMART rav1_2 276 348 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1616 655 ProSiteProfiles AP2/ERF domain profile. 276 342 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g1616 655 FunFam AP2-like ethylene-responsive transcription factor 377 438 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1616 Cre-Chr8:28644650 Cre10g0931 Cre-Chr10:12004700 5.70E-86 dispersed
Cre05g2819 Cre-Chr5:38892665 Cre08g1616 Cre-Chr8:28644650 2.40E-137 transposed
Cre06g2214 Cre-Chr6:29955321 Cre08g1616 Cre-Chr8:28644650 4.20E-94 transposed
Cre07g1765 Cre-Chr7:33149737 Cre08g1616 Cre-Chr8:28644650 7.20E-109 transposed
Cre11g1355 Cre-Chr11:15777955 Cre08g1616 Cre-Chr8:28644650 1.20E-96 transposed
Cre04g1401 Cre-Chr4:32806208 Cre08g1616 Cre-Chr8:28644650 8.20E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54252 PF00847 AP2 1.50E-13 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1616 K09285 - csv:101212797 1163.29