Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1621 ATGATGGCAATGTTGTCTACCAAAGCTAGCCATGATTCTCATGGTCAAGATTCTTCCTATTTTTTGGGATGGCAAGAATATGAGAAGAACCCATATCACCCTACTCGAAACCCCACCGGAATTATCCAAATGGGTCTCGCCGAAAACAAGCTATGTTATGACTTATTGGATGAGTGGATGGAGAACAATCCAGACGCTTTGGGATTGAGAAGAAATGGAGTGTCTGTGTTTAGAGAATTGGCTCTATTTCAAGACTATCATGGCTTGCCTGCTTTTAAAAAGGTGTTGGTTGAATTAATGGAGGAAATACGAGGAAAGAAAGTGAGATTTGATATGAATAAACTGGTCCTCACCGCTGGTGCAACTTCTGCGAATGAGATCCTAATGTTTTGTCTTGCCGAACCTGGTGAAGCTTTCCTTGTTCCCACTCCTTACTATCCTGGGTTTGACAGAGACTTAAAATGGCGTACAGGCGTACGAATAATTCCAATTCAGTGTTCAAGTTCAAACGGTTTCCGAATCACCGCAGCGGCAATGGAAGAAGCGAGGGAACGAGCCCAAAAGCTGAAATTACGAGTCAAAGGGGTTTTAATCACGAACCCATCGAATCCACTGGGCACCACATTGAGCTGCAAGGAGCTGAATTTAGTGGTGAATTTCGCCACAGCCAACGCAATACACATAGTGAGCGACGAGATATATTCCGCCACAGTTTTCTCATCCCCAAATTTCCAAACTATCATGGACCAACGCCTACAAAAATCCCCAATTTGGGAGCGCATCCACGTGGTGTACAGCCTATCCAAGGATCTAGGCTTGCCTGGGTTCCGCGTAGGCATGATTTATTCAAACAACCCCAAAGTAGTGGCTGCAGCTACCAAAATGTCGAGCTTTGGTCTAGTTTCATCTCAGACACAATATTTGGTGTCACAAATGCTAGGAGACACCAAATTCCGAGAGAATTACATGACGGAAATGAAGATGAGGATCAGGAAGAGGAAAGGAATGTTGGAGTTGGGGCTCCGAAAAGCCGGAATCAGGTGTTTGAAAGGGAATGCGGGTTTGTTTTGTTGGGTGGATATGAGGCATCTTTTGAAATACCCAAGTTTCCAACAGGAAATGGAGGTTTGGAAGAGGATTTTGTGCGAGGTTGGGCTTAATGTCTCGCCCGGTTCGGCTTGTCATTGTTCTGAACCGGGTTGGTTCAGAATGTGCTTTGCTAACATGTCGGAACACACTTTGATGGTGGCGATGTGTCGTCTTAAGGCATTTGTGGAGTCTACCTTATCTCTCAAAGGCCACCAGAAGGTCTTCCTTAACTAA 1323 44.97 MMAMLSTKASHDSHGQDSSYFLGWQEYEKNPYHPTRNPTGIIQMGLAENKLCYDLLDEWMENNPDALGLRRNGVSVFRELALFQDYHGLPAFKKVLVELMEEIRGKKVRFDMNKLVLTAGATSANEILMFCLAEPGEAFLVPTPYYPGFDRDLKWRTGVRIIPIQCSSSNGFRITAAAMEEARERAQKLKLRVKGVLITNPSNPLGTTLSCKELNLVVNFATANAIHIVSDEIYSATVFSSPNFQTIMDQRLQKSPIWERIHVVYSLSKDLGLPGFRVGMIYSNNPKVVAAATKMSSFGLVSSQTQYLVSQMLGDTKFRENYMTEMKMRIRKRKGMLELGLRKAGIRCLKGNAGLFCWVDMRHLLKYPSFQQEMEVWKRILCEVGLNVSPGSACHCSEPGWFRMCFANMSEHTLMVAMCRLKAFVESTLSLKGHQKVFLN 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28694097 28696623 - CrPI670011_08g016210.1 Cre08g1621 506539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1621 440 Coils Coil 179 199 - -
Cre08g1621 440 Gene3D - 64 315 IPR015421 -
Cre08g1621 440 CDD AAT_like 78 423 - -
Cre08g1621 440 SUPERFAMILY PLP-dependent transferases 4 425 IPR015424 -
Cre08g1621 440 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 266 279 IPR004838 GO:0003824(InterPro)|GO:0009058(InterPro)|GO:0030170(InterPro)
Cre08g1621 440 Pfam Aminotransferase class I and II 42 418 IPR004839 GO:0009058(InterPro)|GO:0030170(InterPro)
Cre08g1621 440 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 292 315 - -
Cre08g1621 440 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 44 70 - -
Cre08g1621 440 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 77 93 - -
Cre08g1621 440 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 114 134 - -
Cre08g1621 440 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 190 214 - -
Cre08g1621 440 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 136 157 - -
Cre08g1621 440 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 226 249 - -
Cre08g1621 440 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 260 284 - -
Cre08g1621 440 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 8 433 IPR050478 GO:0006520(PANTHER)|GO:0008483(PANTHER)|GO:0016847(PANTHER)
Cre08g1621 440 Gene3D Aspartate Aminotransferase, domain 1 30 420 IPR015422 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1621 K01762 - - csv:101213522 723.005
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1621 Cre-Chr8:28694097 Cre10g1001 Cre-Chr10:17621019 1.80E-173 dispersed
Cre04g1407 Cre-Chr4:32866145 Cre08g1621 Cre-Chr8:28694097 2.10E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g599 Blo01g01481 . . . Bpe02g00470 . . Bma01g02225 Cmo05g00121 . . . . . Sed11g0907 . . Bhi04g00467 Tan02g1683 Cmetu03g1555 . Hepe08g1362 . Lcy13g2159 Cla08g01646 Cam08g2149 Cec08g1738 Cco08g1856 Clacu08g1837 . Cre08g1621 Cone4ag1638 . Cone17ag0907 Cone20ag0251 . . . Cme03g02130 . . . . . . . . . . . . Cma05g00118 Car05g00101 . Cpe11g00103 . . . . . . . . . . . . . . . Lsi08g01554 Csa02g01865 Chy03g01621 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000568 4 3 5 5 5 3 5 3 3 2 3 3 5 2 3 5 3 6 5 3 3 4 2 3 2 3 3 4 3 1 104