Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1625 ATGGAAGATCAGTACAAGGTTCATGGTGATAGGTGTAGGGGAAATTTCTTGTACAATTCAGTACCCGTTTTGGCAACCAATTCTTCATCTCCTGCGGGAAATTTCGTAATTCGTTCCTCTTCTTCAAATGGGAATCAGATCATGGCCGTAAATGCAAATCTCGCCTCCGGTGACTCCAATTATTTTCCTCCGTCCGATCAAGTTGTCAAAGTGGAGCCTCCCACCGTTCAAGTTCATGATTTTCATTACCATTTAATTAGAGAGTTCCAAAATAATAATAATAATATTACTATTAATAATAATAATGTTGATTCAATCAAAGCCAAAATTCTTTCTCACTCTCTATTCTCTAACCTCCTCCAAGCTTTCTTGGATTGCCAAAACGTCGGAGCACCGCCGGAGGTGGCGGCAAAACTTACTTCAGTAAGGGAGGAATTCGAGCAGCGGCGGCGGTCTTCAATGGCGTCCACCGAGGGCTCATCAATTGACCCTGAACTTGATCAATTCATGGAAGCTTATTATGGGATGTTGGTGAAGTATAGAGAGGAGTTAACAAGGCCAATTCAAGAAGCTTCAGATTTCATGCACAGAATTGAATCTCAGCTTAATACTCTCTGCAATGGCTCCTTTCAAATCTTAGCATCTGGAACACAAGGGAAGTGCGAAGGAATGGGATCGTCGTCGGAGGAGGAAGAGAAGGGCGGGGAAATGGAAAGAGAGATAGAAGATCAAATCGACCCACGAGCTGAAGAGCGAGAGCTTAAGAATCACTTACTCAAAAAATACAGTGGTTATCTTAGCAGTTTAAAGCAAGAACTTTCCAAGAAAAAGAAGAAAGGAAAGCTCCCTAAAGACGCAAGACAAGAGCTCCTCCGTTGGTGGGAATTGCACAACAAATGGCCATATCCATCGGAGGCAGAAAAGTTGGCACTGGCGGAATCAACTGGGCTTGACCAGAAACAGATAAATAATTGGTTCATAAACCAAAGGAAAAGGCACTGGAAACCTTCTGAGGATGTGCAGTTTATGGGTATGGAGGGGTTTTATCATCCCAATGCTGCTGCTGCTGCTGCTGCTGCTTTTTACTTTGATGGCCATTTCATGGGTGATTCCCATTATCGTTTGGGTCCATGA 1134 43.3 MEDQYKVHGDRCRGNFLYNSVPVLATNSSSPAGNFVIRSSSSNGNQIMAVNANLASGDSNYFPPSDQVVKVEPPTVQVHDFHYHLIREFQNNNNNITINNNNVDSIKAKILSHSLFSNLLQAFLDCQNVGAPPEVAAKLTSVREEFEQRRRSSMASTEGSSIDPELDQFMEAYYGMLVKYREELTRPIQEASDFMHRIESQLNTLCNGSFQILASGTQGKCEGMGSSSEEEEKGGEMEREIEDQIDPRAEERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQELLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFMGMEGFYHPNAAAAAAAAFYFDGHFMGDSHYRLGP 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28747085 28752706 - CrPI670011_08g016250.1 Cre08g1625 506543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1625 377 ProSitePatterns 'Homeobox' domain signature. 311 334 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre08g1625 377 MobiDBLite consensus disorder prediction 217 246 - -
Cre08g1625 377 CDD homeodomain 285 337 IPR001356 GO:0003677(InterPro)
Cre08g1625 377 SMART ELK_2 165 185 IPR005539 GO:0003677(InterPro)
Cre08g1625 377 SMART ELK_2 253 274 IPR005539 GO:0003677(InterPro)
Cre08g1625 377 MobiDBLite consensus disorder prediction 225 246 - -
Cre08g1625 377 Pfam KNOX1 domain 106 147 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre08g1625 377 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 102 343 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre08g1625 377 SMART KNOX1_2 104 148 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre08g1625 377 Gene3D - 270 342 - -
Cre08g1625 377 ProSiteProfiles ELK domain profile. 253 273 IPR005539 GO:0003677(InterPro)
Cre08g1625 377 Pfam KNOX2 domain 163 206 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre08g1625 377 Pfam Homeobox KN domain 293 332 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre08g1625 377 ProSiteProfiles 'Homeobox' domain profile. 273 336 IPR001356 GO:0003677(InterPro)
Cre08g1625 377 SMART KNOX2_2 156 207 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre08g1625 377 SMART HOX_1 275 340 IPR001356 GO:0003677(InterPro)
Cre08g1625 377 SUPERFAMILY Homeodomain-like 274 346 IPR009057 -
Cre08g1625 377 Pfam ELK domain 253 274 IPR005539 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2714 Cre-Chr5:38032045 Cre08g1625 Cre-Chr8:28747085 2.70E-74 dispersed
Cre08g1625 Cre-Chr8:28747085 Cre08g1720 Cre-Chr8:29486087 1.10E-33 dispersed
Cre05g1932 Cre-Chr5:31489712 Cre08g1625 Cre-Chr8:28747085 6.30E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54255 PF03791 KNOX2 3.10E-23 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1625 - - - 0.0