Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g1625 | ATGGAAGATCAGTACAAGGTTCATGGTGATAGGTGTAGGGGAAATTTCTTGTACAATTCAGTACCCGTTTTGGCAACCAATTCTTCATCTCCTGCGGGAAATTTCGTAATTCGTTCCTCTTCTTCAAATGGGAATCAGATCATGGCCGTAAATGCAAATCTCGCCTCCGGTGACTCCAATTATTTTCCTCCGTCCGATCAAGTTGTCAAAGTGGAGCCTCCCACCGTTCAAGTTCATGATTTTCATTACCATTTAATTAGAGAGTTCCAAAATAATAATAATAATATTACTATTAATAATAATAATGTTGATTCAATCAAAGCCAAAATTCTTTCTCACTCTCTATTCTCTAACCTCCTCCAAGCTTTCTTGGATTGCCAAAACGTCGGAGCACCGCCGGAGGTGGCGGCAAAACTTACTTCAGTAAGGGAGGAATTCGAGCAGCGGCGGCGGTCTTCAATGGCGTCCACCGAGGGCTCATCAATTGACCCTGAACTTGATCAATTCATGGAAGCTTATTATGGGATGTTGGTGAAGTATAGAGAGGAGTTAACAAGGCCAATTCAAGAAGCTTCAGATTTCATGCACAGAATTGAATCTCAGCTTAATACTCTCTGCAATGGCTCCTTTCAAATCTTAGCATCTGGAACACAAGGGAAGTGCGAAGGAATGGGATCGTCGTCGGAGGAGGAAGAGAAGGGCGGGGAAATGGAAAGAGAGATAGAAGATCAAATCGACCCACGAGCTGAAGAGCGAGAGCTTAAGAATCACTTACTCAAAAAATACAGTGGTTATCTTAGCAGTTTAAAGCAAGAACTTTCCAAGAAAAAGAAGAAAGGAAAGCTCCCTAAAGACGCAAGACAAGAGCTCCTCCGTTGGTGGGAATTGCACAACAAATGGCCATATCCATCGGAGGCAGAAAAGTTGGCACTGGCGGAATCAACTGGGCTTGACCAGAAACAGATAAATAATTGGTTCATAAACCAAAGGAAAAGGCACTGGAAACCTTCTGAGGATGTGCAGTTTATGGGTATGGAGGGGTTTTATCATCCCAATGCTGCTGCTGCTGCTGCTGCTGCTTTTTACTTTGATGGCCATTTCATGGGTGATTCCCATTATCGTTTGGGTCCATGA | 1134 | 43.3 | MEDQYKVHGDRCRGNFLYNSVPVLATNSSSPAGNFVIRSSSSNGNQIMAVNANLASGDSNYFPPSDQVVKVEPPTVQVHDFHYHLIREFQNNNNNITINNNNVDSIKAKILSHSLFSNLLQAFLDCQNVGAPPEVAAKLTSVREEFEQRRRSSMASTEGSSIDPELDQFMEAYYGMLVKYREELTRPIQEASDFMHRIESQLNTLCNGSFQILASGTQGKCEGMGSSSEEEEKGGEMEREIEDQIDPRAEERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQELLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFMGMEGFYHPNAAAAAAAAFYFDGHFMGDSHYRLGP | 377 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 28747085 | 28752706 | - | CrPI670011_08g016250.1 | Cre08g1625 | 506543 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g1625 | 377 | ProSitePatterns | 'Homeobox' domain signature. | 311 | 334 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cre08g1625 | 377 | MobiDBLite | consensus disorder prediction | 217 | 246 | - | - | |
Cre08g1625 | 377 | CDD | homeodomain | 285 | 337 | IPR001356 | GO:0003677(InterPro) | |
Cre08g1625 | 377 | SMART | ELK_2 | 165 | 185 | IPR005539 | GO:0003677(InterPro) | |
Cre08g1625 | 377 | SMART | ELK_2 | 253 | 274 | IPR005539 | GO:0003677(InterPro) | |
Cre08g1625 | 377 | MobiDBLite | consensus disorder prediction | 225 | 246 | - | - | |
Cre08g1625 | 377 | Pfam | KNOX1 domain | 106 | 147 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cre08g1625 | 377 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 102 | 343 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cre08g1625 | 377 | SMART | KNOX1_2 | 104 | 148 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cre08g1625 | 377 | Gene3D | - | 270 | 342 | - | - | |
Cre08g1625 | 377 | ProSiteProfiles | ELK domain profile. | 253 | 273 | IPR005539 | GO:0003677(InterPro) | |
Cre08g1625 | 377 | Pfam | KNOX2 domain | 163 | 206 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cre08g1625 | 377 | Pfam | Homeobox KN domain | 293 | 332 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cre08g1625 | 377 | ProSiteProfiles | 'Homeobox' domain profile. | 273 | 336 | IPR001356 | GO:0003677(InterPro) | |
Cre08g1625 | 377 | SMART | KNOX2_2 | 156 | 207 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cre08g1625 | 377 | SMART | HOX_1 | 275 | 340 | IPR001356 | GO:0003677(InterPro) | |
Cre08g1625 | 377 | SUPERFAMILY | Homeodomain-like | 274 | 346 | IPR009057 | - | |
Cre08g1625 | 377 | Pfam | ELK domain | 253 | 274 | IPR005539 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g2714 | Cre-Chr5:38032045 | Cre08g1625 | Cre-Chr8:28747085 | 2.70E-74 | dispersed | |
Cre08g1625 | Cre-Chr8:28747085 | Cre08g1720 | Cre-Chr8:29486087 | 1.10E-33 | dispersed | |
Cre05g1932 | Cre-Chr5:31489712 | Cre08g1625 | Cre-Chr8:28747085 | 6.30E-111 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54255 | PF03791 | KNOX2 | 3.10E-23 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g1625 | - | - | - | 0.0 |