Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre08g1626 | ATGATCACGGAATCAATGCTCCTCAATCCGACGGCTCACATTTCATCCTGGGACTCCCTCGACGATCCCGCCGCCGCAATCCCTTCTTATTTCACCGCCGGTCACGTGTCGCCCCTCGATTCGCCCACGGCGGCGCTCATGGACTTCGATTCATCCTTCTGGGAAGATCCAGACTTGCCGTCGGCTGTGGACGCCTTCTCGTGCGACCAGTTCCGGATGTATGAGTTCAAAGTCCGCACGTGCGCACGTGGGAGGTCGCACGATTGGACTAAATGTCCGTACGCTCACACCGGCGAGAAGGCTCGCCGCCGAGATCCGAGGAAGTTCAACTATTCCGGCACAGAGTGCCCGGATTTACGCCATGGGTGTTGTAAAAAAGGAGACGCTTGTGAGTACGCTCATGGAGTTTTCGAAAGTTGGCTTCACCCGGACCGGTACCGGACTCAACCGTGCCGTGACGGAACCGGATGCCGACGACGGGTCTGTTTCTTCGCTCACTCGTCGGAGCAGCTCCGGATTCCGGGGAAACAGAGTCTCAGATCTCCACGGGCGAGAGAAATCGCTGTCCCTGCTGTATCATCGCCGACGTCGATCCTAATGTCGCCGTCATCGGACTCGCCGCCTATGTCTCCGATCAGCCCTGTAATCAGCGGCGGCGAATCGTTCAGTAGATTAGTCGCATTGATGCACAGTTTTCACCTGGATGAACTGAAAACGAATCCAGCCGTCTCTGGCTTCAGTCCAAGTCTCCGGCGGAACTCCGGCGCATTTGATCTGTGGGACAGAGAAAATGAAGAAGAACCAGCAATGGAGAGAGTAGAATCAGGGAGAAACCTACGAGCCCAAATGTACGCGAAATTAATGAGAGAGAATTCAGTGGACCGAGTCCGGCCACTGATATCGGCCGGATCACGGAACTAA | 921 | 55.81 | MITESMLLNPTAHISSWDSLDDPAAAIPSYFTAGHVSPLDSPTAALMDFDSSFWEDPDLPSAVDAFSCDQFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGTECPDLRHGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCRRRVCFFAHSSEQLRIPGKQSLRSPRAREIAVPAVSSPTSILMSPSSDSPPMSPISPVISGGESFSRLVALMHSFHLDELKTNPAVSGFSPSLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLISAGSRN | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 28770826 | 28771746 | + | CrPI670011_08g016260.1 | Cre08g1626 | 506544 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre08g1626 | 306 | PANTHER | UNKEMPT FAMILY MEMBER | 52 | 237 | IPR045234 | - | |
| Cre08g1626 | 306 | FunFam | Zinc finger CCCH domain-containing protein 66 | 68 | 136 | - | - | |
| Cre08g1626 | 306 | ProSiteProfiles | Zinc finger C3H1-type profile. | 110 | 137 | IPR000571 | GO:0046872(InterPro) | |
| Cre08g1626 | 306 | SMART | c3hfinal6 | 110 | 136 | IPR000571 | GO:0046872(InterPro) | |
| Cre08g1626 | 306 | SMART | c3hfinal6 | 145 | 168 | IPR000571 | GO:0046872(InterPro) | |
| Cre08g1626 | 306 | Gene3D | - | 107 | 178 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre08g1626 | Cre-Chr8:28770826 | Cre11g0685 | Cre-Chr11:3909882 | 2.40E-63 | dispersed | |
| Cre03g1859 | Cre-Chr3:35516935 | Cre08g1626 | Cre-Chr8:28770826 | 4.50E-67 | wgd | |
| Cre05g1935 | Cre-Chr5:31535587 | Cre08g1626 | Cre-Chr8:28770826 | 1.50E-77 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre08g1626 | - | - | - | 0.0 |