Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1640 ATGTTGAAGCTATTATCCTCATCTCACCGCATTTCCATCTTCATCTTCATCTTCATCTTCATCTTCATCTTCCTCTGCTCTCCGCCGCTGCTTCCTTCCGCCGCTCTTCCCCTCTCCGACTCCGGTCATCAGCTTATCGCTAACGTTACCCTCCAGTCTAATAATGTATCCGTTCCGAGGAATAAGGAGGGCAGTTTTGCTGACATCATCGATCGTGCTTTGGAGAATGAATTCAAGGAGAATGACCAGAATGAAGCAATTGATGCAGGAAGCTTCAACAACAGTGTAGCGGAGCAGCAGGCAGTTCTGGAGACTGTGGCAAGGGTAAAGTCAAAGAAAAATGATACGAAAGAGGAAAAGTTTCAGCTTCAAAACGTTTTCAATTTGGACAGTGATAATAGAGCTGAAGACACTCCTACATTGATTGATCGAAAGGATAATGTCTTTATAATATCTAACTTCAAGTCTAAATATCCAGTGCTACAATTAGACTTGAGATTGATCTCTGATTTGGTAATCGTAATTGTCTCTGCAACTTGTGGTGGCATTGCCTTCGCATGTGCTGGACAACCAGTTATAACTGGATACCTTCTAGCAGGATCTATTATTGGACCTGGAGGATTTAACTTCGTCAGTGAAATGGTTCAAGTTGAAACGGTAGCTCAGTTTGGTGTAATTTTTCTTCTTTTTGCACTGGGGTTGGAGTTTTCAACAGCTAAGCTTCGAGTTGTTCGTGCAGTTGCTGTTCTTGGTGGCCTGCTCCAAATTTTCCTGTTTATGTGCCTCAGTGGGATCACAGCCTCGTCATGCGGTGGGAGTGCTTCTGAAGGGGTTTTTGTTGGAGCATTTCTATCAATGTCCTCAACAGCAGTGGTGCTGAAGTTTTTGATGGAAAAGAACTCAACTAATGCTCTTCATGGACAAGTCACAATTGGCACCCTTATTCTGCAGGACTGTGCTGTTGGGTTACTGTTTGCTTTGCTTCCAGTACTAGGTGGGAATTCTGGTATTCTTCAAGGAGTAATATCCATGAGTAAAGTGTTGGTGACCTTGGTTACTTTTTTGGTTGCTTTGTCAATTTTATCCCGTACATGTATTCCCTGGCTTTTAAAGTTGATGATAAGTCTATCATCACAGACCAATGAACTCTATCAATTAGCCTCCGTGGCGTTCTGCTTGCTCGTAGCATGGTGTAGTGATAAGTTGGGGCTGAGTCTAGAATTGGGTTCCTTTGCTGCTGGAGTGATGATATCGACAACTGATCTTGCTCAACACACACTTGAACAAATAGAGCCTATAAGGAACCTTTTTGCAGCCCTTTTTCTTGCCAGCATTGGAATGCTGATCCACGTTCAGTTTTTGTGGAACCATGTTGATATATTACTAGCAGCTGTTATACTGGTGATAATTGTAAAAACAATTGTAATTAGCACAGTGGTGAAGGGATTTGGGTATAACAACAGGACAGCACTCCTGGTTGGAATGTCTCTGGCTCAGATAGGAGAATTTGCTTTTGTTCTTCTCAGCCGCGCTTCTAATCTTCATCTAGTTGAGGGGAAACTGTATCTATTGCTTATTGGGACCACAGCCCTCAGTCTGGTGACAACTCCTTTTCTTTTCAAGCTGATACCTGCTGTAGTACATTTAGGCGTGCTGTTGCGGTGGTTCTCTCCAGATAGTCTCGTTGAGTCTTCCATTGCTACTTCAAGACTCTTCATCAGATGGTCATCAGCAAAAGGAAAAAGAAAAGAAGGTCCAAGGCTTAACTATGTTGATAGATAG 1782 42.82 MLKLLSSSHRISIFIFIFIFIFIFLCSPPLLPSAALPLSDSGHQLIANVTLQSNNVSVPRNKEGSFADIIDRALENEFKENDQNEAIDAGSFNNSVAEQQAVLETVARVKSKKNDTKEEKFQLQNVFNLDSDNRAEDTPTLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVIVIVSATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAVLGGLLQIFLFMCLSGITASSCGGSASEGVFVGAFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGILQGVISMSKVLVTLVTFLVALSILSRTCIPWLLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQIEPIRNLFAALFLASIGMLIHVQFLWNHVDILLAAVILVIIVKTIVISTVVKGFGYNNRTALLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLIGTTALSLVTTPFLFKLIPAVVHLGVLLRWFSPDSLVESSIATSRLFIRWSSAKGKRKEGPRLNYVDR 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28909566 28918731 - CrPI670011_08g016400.1 Cre08g1640 506558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1640 593 Gene3D - 165 548 IPR038770 -
Cre08g1640 593 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 50 564 IPR045158 GO:0015386(InterPro)|GO:0071805(InterPro)|GO:1902600(InterPro)
Cre08g1640 593 Pfam Sodium/hydrogen exchanger family 175 541 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0933 Cre-Chr5:8505756 Cre08g1640 Cre-Chr8:28909566 2.40E-185 dispersed
Cre01g0791 Cre-Chr1:8568599 Cre08g1640 Cre-Chr8:28909566 2.20E-29 transposed
Cre05g0250 Cre-Chr5:2380133 Cre08g1640 Cre-Chr8:28909566 3.10E-37 transposed
Cre03g1838 Cre-Chr3:35294217 Cre08g1640 Cre-Chr8:28909566 3.50E-228 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1640 K26735 - csv:101217282 964.526