Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1657 ATGGATATTACTGAGGTTGAAGAAAATCTATTTGCTGCAAGTGATGCCAAGCTACATGGAGGAATGTGCAAAACTCTCTCTGCAATATATTATAAAGTACTATCAATTTTCCCTTCATTGGAAGCTGCACGACCTCGGAGCAAATCTGGTATCCAGTCATTATGTTCATTGCATGTAGCACTAGAAAAAGCCAAGAACACTCTCCAACATTGTACAGAGAGTAGCAAACTTTACTTGGCTATAACTGGGGACTCTGTCCTGTCAAAGTTTGAGAAGGTAAAAAATGCTCTACAAGACAGCCTTAAACGTGTTGAAGATATTGTTCCACAGTCAATTGGATATCAGGTTCAGGAGATTATGAAGGAACTGGCCAGTACTCAATTTTTCCTGGATCCTTTAGAGAAGCAAGTTGGTGACGACATTATTTTATTGCTCCAACAGGGACGAACATTTAACAACACTGTTGACAGCAATGAGCTTGAGGCTTTTCACCAAGCTGCTATTAGACTTGGAATAAACTCCTCGAGAGCAGCTCTTGCAGAAAGAAGAGCACTAAAGAAACTAATTGACCGGTCTCGCACTGAAGACGACAAGAGGAAGGAATCAATTGTAGCATATCTTTTGCATCTCATGAGGAAGTACTCCAAGTTATTTAGAAGCGAGGTATCAGATGACAATGATTCACAGGGTTCTGGACCTTGTTCACCCACTGTTCAGAGCTCTCTCGAGGACAGTGGACCTGGTGGAAATGGTCAAGCCTTTGAAAGGCAGCTAACAAAGATTGGTTCTTTTACTTTGAAGCCAAAAAATCGCAGATTGGAGCAGATTCCCCTTCCACCTGATGAGTTGAGGTGTCCTATATCATTGCAGCTTATGTATGATCCGGTCATAATTGCTTCCGGGCAAACATATGAAAGGATTTGCATTGAGAAGTGGTTAAGTGACGGCCATAACACCTGCCCAAAAACTCAACAGAAACTCTCTCATCTTTCATTGACACCCAATTACTGTGTTAAGGGCCTGATTGCAAACTGGTGTGAACAGTATGGAGTTCCTGTTCCTGATGGGCCTCCAGATAGTCTTGACCTCAATTACTGGAGGCTCGAGTTATCTGAATCAGAGTCTCTTAATTTGTCACCTGTGGACTCTGTTGGTTCTTGTAAGTTGAAAGATGTTAAAGTTGTCCCACTGGATGAAAATTGTGTAACTGAGGAGATCAAAGGAAATGTAGTGGATGACATTGACAACTCTGCTGAAGACCAAGAGTCCAATGTAAATATGCTTGCTAGGTATGAACAGTATTTGAAAGTCCTAAATGAAGAAGCGGACTTGAAGAAAAAGTCCGCGGTTGTGGAGCAAATTAGACTGTTGCTCAAGGATGATGAAGAGGCGAGGATATATATGGGAGCTAATGGATTTGTCCAGGGACTTCTACGGTACTTAGAGATAGCTGTGCAAGAACAAAATACCAAGGCCCAGGAAAGTGGAGCAATGGCTCTTTTCAACCTTGCTGTCAACAACGACAGGAACAAGGAAATAATGTTGGCAGAACGGGTGATTTCATTGTTGGAGGAAATGATTATGAACCCAAATTCCCATGGATATGCAACGGCCCTCTATCTTAATGTCTCCTGTCTGGAAGAAGCAAAATCTATTATCGGCTCAAGTTGTGCGGTCCCGTTCTTGACTCAACTCCTCCACGCTAATACCGAAACACAATGCAAGCTTGATGCACTTCACACACTTTACAATCTCTCAACTGTGCCCTCCAATATTCCCAACCTGGTTTCTTCTGGAATCATCAAGGGACTTCAAGCCCTTCTTTCAGCCCGTCTGGATCGAACATGGACCGAAAAGTGCATAGCCATCTTGATAAATTTGGCTTCAAGTGAATCAGGTAGAGATCAAATGTCATCTACTCCAGAACTTATCAGTGGGTTGGCAGCAATATTAGACAATGGAGAGCCCATTGAGCAGGAACAAGCAGTGGCTTGTCTCTTGATTCTATGCAATGGGAATGAGAGGTGCAGCGAGATGGTCCTACAGGAAGGCGTAATTCCCGGTTTGGTGTCGATGTCTGTGAACGGGACAGCAAGAGGTAAGGAAAAGGCTCAAAAGCTTCTGATGTTGTTTAGGGAGCAACGACAACGGGAGGCGCCGCCACCAGCACCCACACCCACACTAACACCGACACCCATACCGACACCGACCGAACGATTCGGGACATCTATGGCTGTGGCGGAATCAAAGCCACTGTGCAAGTCAATCTCAAGAAGAAAAACATCAAAAGCTTTTAGCTTTTTATGGAAAAGCAAAAGCTATTCAGTGTACCAATGCTAA 2340 43.55 MDITEVEENLFAASDAKLHGGMCKTLSAIYYKVLSIFPSLEAARPRSKSGIQSLCSLHVALEKAKNTLQHCTESSKLYLAITGDSVLSKFEKVKNALQDSLKRVEDIVPQSIGYQVQEIMKELASTQFFLDPLEKQVGDDIILLLQQGRTFNNTVDSNELEAFHQAAIRLGINSSRAALAERRALKKLIDRSRTEDDKRKESIVAYLLHLMRKYSKLFRSEVSDDNDSQGSGPCSPTVQSSLEDSGPGGNGQAFERQLTKIGSFTLKPKNRRLEQIPLPPDELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHNTCPKTQQKLSHLSLTPNYCVKGLIANWCEQYGVPVPDGPPDSLDLNYWRLELSESESLNLSPVDSVGSCKLKDVKVVPLDENCVTEEIKGNVVDDIDNSAEDQESNVNMLARYEQYLKVLNEEADLKKKSAVVEQIRLLLKDDEEARIYMGANGFVQGLLRYLEIAVQEQNTKAQESGAMALFNLAVNNDRNKEIMLAERVISLLEEMIMNPNSHGYATALYLNVSCLEEAKSIIGSSCAVPFLTQLLHANTETQCKLDALHTLYNLSTVPSNIPNLVSSGIIKGLQALLSARLDRTWTEKCIAILINLASSESGRDQMSSTPELISGLAAILDNGEPIEQEQAVACLLILCNGNERCSEMVLQEGVIPGLVSMSVNGTARGKEKAQKLLMLFREQRQREAPPPAPTPTLTPTPIPTPTERFGTSMAVAESKPLCKSISRRKTSKAFSFLWKSKSYSVYQC 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29080466 29083939 + CrPI670011_08g016570.1 Cre08g1657 506575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1657 779 SUPERFAMILY RING/U-box 279 355 - -
Cre08g1657 779 Gene3D - 408 719 IPR011989 -
Cre08g1657 779 Coils Coil 87 107 - -
Cre08g1657 779 MobiDBLite consensus disorder prediction 224 247 - -
Cre08g1657 779 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Cre08g1657 779 SMART Ubox_2 282 345 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre08g1657 779 MobiDBLite consensus disorder prediction 222 253 - -
Cre08g1657 779 SUPERFAMILY ARM repeat 432 711 IPR016024 -
Cre08g1657 779 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 351 IPR013083 -
Cre08g1657 779 CDD RING-Ubox_PUB 280 332 IPR045210 -
Cre08g1657 779 Pfam U-box domain 280 348 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre08g1657 779 Gene3D - 12 105 IPR036537 GO:0007166(InterPro)
Cre08g1657 779 PANTHER U BOX DOMAIN-CONTAINING 22 715 - -
Cre08g1657 779 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre08g1657 779 SMART arm_5 461 505 IPR000225 GO:0005515(InterPro)
Cre08g1657 779 SMART arm_5 546 587 IPR000225 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1657 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1161 Cre-Chr3:11993635 Cre08g1657 Cre-Chr8:29080466 7.80E-11 dispersed
Cre05g1806 Cre-Chr5:30112420 Cre08g1657 Cre-Chr8:29080466 1.50E-24 dispersed
Cre07g1210 Cre-Chr7:25372065 Cre08g1657 Cre-Chr8:29080466 1.50E-87 dispersed
Cre08g1657 Cre-Chr8:29080466 Cre11g1810 Cre-Chr11:29702577 6.20E-281 dispersed
Cre08g1657 Cre-Chr8:29080466 Cre03g0979 Cre-Chr3:8648408 8.40E-36 transposed
Cre08g1657 Cre-Chr8:29080466 Cre03g0473 Cre-Chr3:3130810 8.40E-36 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g1678 . 1 1041 U-box Gene Family AT5G15400 76.1 0.0e+00 1579.7
Cre02g1560 . 279 923 U-box Gene Family AT2G23140 66.6 2.1e-125 446.8
Cre08g1657 . 1 777 U-box Gene Family AT1G24330 59.9 1.4e-245 846.3
Cre11g1810 . 1 755 U-box Gene Family AT1G24330 58.3 3.8e-230 795.0
Cre08g1657 . 1 776 U-box Gene Family AT1G67530 59.6 3.3e-242 835.1
Cre11g1810 . 1 756 U-box Gene Family AT1G67530 57.3 2.6e-226 782.3
Cre04g1857 . 1 362 U-box Gene Family AT4G21350 62.3 1.2e-120 430.3
Cre07g0573 . 135 460 U-box Gene Family AT3G07360 55.3 4.2e-82 302.0
Cre07g1008 . 265 452 U-box Gene Family AT1G71020 70.9 9.0e-73 271.6
Cre09g1916 . 1078 1282 U-box Gene Family AT1G71020 55.6 1.9e-54 210.7
Cre05g2297 . 249 416 U-box Gene Family AT1G71020 57.9 7.7e-48 188.7
Cre03g0473 . 281 450 U-box Gene Family AT1G71020 57.8 1.0e-47 188.3
Cre02g2329 . 255 425 U-box Gene Family AT1G71020 57.6 1.5e-46 184.5
Cre07g1008 . 16 656 U-box Gene Family AT1G23030 56.8 6.9e-110 395.2
Cre03g0473 . 116 655 U-box Gene Family AT2G28830 60.1 5.9e-103 372.1
Cre02g2329 . 93 635 U-box Gene Family AT2G28830 50.5 3.4e-98 356.3
Cre03g0473 . 24 689 U-box Gene Family AT3G46510 68.4 3.2e-169 592.4
Cre02g2329 . 3 638 U-box Gene Family AT3G46510 66.1 1.4e-156 550.4
Cre05g2297 . 16 623 U-box Gene Family AT3G46510 59.0 3.8e-122 436.0
Cre02g1342 . 36 640 U-box Gene Family AT3G46510 50.2 6.8e-87 318.9
Cre05g2297 . 12 625 U-box Gene Family AT3G54850 68.6 5.0e-164 575.1
Cre02g2329 . 13 628 U-box Gene Family AT3G54850 57.3 5.6e-115 412.1
Cre03g0473 . 31 650 U-box Gene Family AT3G54850 55.4 2.9e-103 373.2
Cre02g1342 . 92 644 U-box Gene Family AT5G42340 64.2 7.9e-128 454.9
Cre04g0745 . 9 669 U-box Gene Family AT5G01830 57.8 7.9e-200 694.1
Cre03g0979 . 1 714 U-box Gene Family AT1G29340 68.0 1.9e-247 852.4
Cre05g1302 . 27 442 U-box Gene Family AT5G37490 51.7 1.3e-110 397.1
Cre04g0706 . 4 422 U-box Gene Family AT3G52450 52.4 4.4e-119 425.2
Cre10g1945 . 1 403 U-box Gene Family AT3G52450 50.9 3.9e-115 412.1
Cre10g1945 . 1 403 U-box Gene Family AT2G35930 55.8 1.7e-120 429.9
Cre04g0706 . 7 422 U-box Gene Family AT2G35930 51.4 5.1e-117 418.3
Cre05g1190 . 9 424 U-box Gene Family AT3G19380 64.4 2.2e-147 519.2
Cre05g1190 . 1 424 U-box Gene Family AT1G49780 64.6 6.6e-152 534.3
Cre04g1187 . 1 407 U-box Gene Family AT5G64660 53.9 4.6e-121 431.8
Cre04g1187 . 1 407 U-box Gene Family AT5G09800 50.8 1.2e-105 380.6
Cre05g2828 . 1 454 U-box Gene Family AT3G49810 63.0 1.5e-154 543.1
Cre08g1608 . 1 456 U-box Gene Family AT3G49810 62.3 8.2e-153 537.3
Cre08g1608 . 1 456 U-box Gene Family AT5G65920 63.4 1.4e-152 536.6
Cre05g2828 . 1 454 U-box Gene Family AT5G65920 61.8 2.1e-148 522.7
Cre05g0232 . 72 943 U-box Gene Family AT2G45910 52.6 5.5e-235 811.2
Cre09g2062 . 65 841 U-box Gene Family AT4G25160 51.1 1.8e-217 753.1
Cre01g0585 . 1 551 U-box Gene Family AT5G40140 53.9 1.6e-94 344.0
Cre01g1292 . 29 498 U-box Gene Family AT5G40140 51.9 5.2e-56 216.1
Cre08g0873 . 26 834 U-box Gene Family AT1G76390 61.5 3.0e-270 928.3
Cre08g0873 . 35 834 U-box Gene Family AT1G20780 62.0 3.5e-279 958.0
Cre08g1657 . 1 779 U-box Gene Family AT1G27910 62.8 1.6e-268 922.5
Cre11g1810 . 1 767 U-box Gene Family AT1G27910 62.4 5.7e-263 904.0
Cre04g1378 . 443 1034 U-box Gene Family AT5G67530 74.2 3.2e-261 897.9
Cre10g1992 . 12 162 U-box Gene Family AT5G67530 50.3 1.0e-41 168.7
Cre05g0294 . 656 788 U-box Gene Family AT5G67530 56.4 2.5e-40 164.1
Cre05g0488 . 1 517 U-box Gene Family AT1G04510 74.4 5.7e-222 767.3
Cre05g0488 . 1 486 U-box Gene Family AT2G33340 73.6 5.1e-209 724.2
Cre07g0572 . 10 278 U-box Gene Family AT3G07370 66.5 2.0e-101 365.9
Cre10g1678 . 1 1041 U-box Gene Family AT5G15400 76.1 0.0e+00 1579.7
Cre02g1560 . 279 923 U-box Gene Family AT2G23140 66.6 2.1e-125 446.8
Cre08g1657 . 1 777 U-box Gene Family AT1G24330 59.9 1.4e-245 846.3
Cre11g1810 . 1 755 U-box Gene Family AT1G24330 58.3 3.8e-230 795.0
Cre08g1657 . 1 776 U-box Gene Family AT1G67530 59.6 3.3e-242 835.1
Cre11g1810 . 1 756 U-box Gene Family AT1G67530 57.3 2.6e-226 782.3
Cre04g1857 . 1 362 U-box Gene Family AT4G21350 62.3 1.2e-120 430.3
Cre07g0573 . 135 460 U-box Gene Family AT3G07360 55.3 4.2e-82 302.0
Cre07g1008 . 265 452 U-box Gene Family AT1G71020 70.9 9.0e-73 271.6
Cre09g1916 . 1078 1282 U-box Gene Family AT1G71020 55.6 1.9e-54 210.7
Cre05g2297 . 249 416 U-box Gene Family AT1G71020 57.9 7.7e-48 188.7
Cre03g0473 . 281 450 U-box Gene Family AT1G71020 57.8 1.0e-47 188.3
Cre02g2329 . 255 425 U-box Gene Family AT1G71020 57.6 1.5e-46 184.5
Cre07g1008 . 16 656 U-box Gene Family AT1G23030 56.8 6.9e-110 395.2
Cre03g0473 . 116 655 U-box Gene Family AT2G28830 60.1 5.9e-103 372.1
Cre02g2329 . 93 635 U-box Gene Family AT2G28830 50.5 3.4e-98 356.3
Cre03g0473 . 24 689 U-box Gene Family AT3G46510 68.4 3.2e-169 592.4
Cre02g2329 . 3 638 U-box Gene Family AT3G46510 66.1 1.4e-156 550.4
Cre05g2297 . 16 623 U-box Gene Family AT3G46510 59.0 3.8e-122 436.0
Cre02g1342 . 36 640 U-box Gene Family AT3G46510 50.2 6.8e-87 318.9
Cre05g2297 . 12 625 U-box Gene Family AT3G54850 68.6 5.0e-164 575.1
Cre02g2329 . 13 628 U-box Gene Family AT3G54850 57.3 5.6e-115 412.1
Cre03g0473 . 31 650 U-box Gene Family AT3G54850 55.4 2.9e-103 373.2
Cre02g1342 . 92 644 U-box Gene Family AT5G42340 64.2 7.9e-128 454.9
Cre04g0745 . 9 669 U-box Gene Family AT5G01830 57.8 7.9e-200 694.1
Cre03g0979 . 1 714 U-box Gene Family AT1G29340 68.0 1.9e-247 852.4
Cre05g1302 . 27 442 U-box Gene Family AT5G37490 51.7 1.3e-110 397.1
Cre04g0706 . 4 422 U-box Gene Family AT3G52450 52.4 4.4e-119 425.2
Cre10g1945 . 1 403 U-box Gene Family AT3G52450 50.9 3.9e-115 412.1
Cre10g1945 . 1 403 U-box Gene Family AT2G35930 55.8 1.7e-120 429.9
Cre04g0706 . 7 422 U-box Gene Family AT2G35930 51.4 5.1e-117 418.3
Cre05g1190 . 9 424 U-box Gene Family AT3G19380 64.4 2.2e-147 519.2
Cre05g1190 . 1 424 U-box Gene Family AT1G49780 64.6 6.6e-152 534.3
Cre04g1187 . 1 407 U-box Gene Family AT5G64660 53.9 4.6e-121 431.8
Cre04g1187 . 1 407 U-box Gene Family AT5G09800 50.8 1.2e-105 380.6
Cre05g2828 . 1 454 U-box Gene Family AT3G49810 63.0 1.5e-154 543.1
Cre08g1608 . 1 456 U-box Gene Family AT3G49810 62.3 8.2e-153 537.3
Cre08g1608 . 1 456 U-box Gene Family AT5G65920 63.4 1.4e-152 536.6
Cre05g2828 . 1 454 U-box Gene Family AT5G65920 61.8 2.1e-148 522.7
Cre05g0232 . 72 943 U-box Gene Family AT2G45910 52.6 5.5e-235 811.2
Cre09g2062 . 65 841 U-box Gene Family AT4G25160 51.1 1.8e-217 753.1
Cre01g0585 . 1 551 U-box Gene Family AT5G40140 53.9 1.6e-94 344.0
Cre01g1292 . 29 498 U-box Gene Family AT5G40140 51.9 5.2e-56 216.1
Cre08g0873 . 26 834 U-box Gene Family AT1G76390 61.5 3.0e-270 928.3
Cre08g0873 . 35 834 U-box Gene Family AT1G20780 62.0 3.5e-279 958.0
Cre08g1657 . 1 779 U-box Gene Family AT1G27910 62.8 1.6e-268 922.5
Cre11g1810 . 1 767 U-box Gene Family AT1G27910 62.4 5.7e-263 904.0
Cre04g1378 . 443 1034 U-box Gene Family AT5G67530 74.2 3.2e-261 897.9
Cre10g1992 . 12 162 U-box Gene Family AT5G67530 50.3 1.0e-41 168.7
Cre05g0294 . 656 788 U-box Gene Family AT5G67530 56.4 2.5e-40 164.1
Cre05g0488 . 1 517 U-box Gene Family AT1G04510 74.4 5.7e-222 767.3
Cre05g0488 . 1 486 U-box Gene Family AT2G33340 73.6 5.1e-209 724.2
Cre07g0572 . 10 278 U-box Gene Family AT3G07370 66.5 2.0e-101 365.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003521 0 9 3 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 48