Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1670 ATGTCCCCCTCCACTTTACTAATTGGTATGATGACCCCGGTGCAAACTAAGATGTTGAAGCTAAGGCTAAGACTTTTTACGGACCTGCGGAAGAAAGGACCGAGTCTGAACTTAAGAGTCAGAAATGAAAATTTGAAGGTGGTGGGCTCGTCGTTCCTTCATACTCCGCACGCTCGCTCTCCCAAGTCCCATCTTTCTCGAAATTTCACGGAATTCCCTGAATCAGAGACTATGTACTTGTCTGATAAGCCTCGCCCAATCGATATTTACAAGGAAGAAGGTAGCAGAGATATGATGATCGAGGTCGCCTCCAATGGCGACCACCATATTCAACCTCATCAGCCACAGCCACAGCCACATCAGACTCATCAGCAGCACCAAATGATGCTTGGTGACAGCAGTGGTGAGGATCATGAAGTCAAGGCTCCCAAGAAGCGAGCGGAGACTTGGGTTCAGGATGAGACTCGAAGCTTAATTGCCCTACGCCGGGAGATGGATGGCTTGTTTAATACTTCGAAATCCAACAAGCATTTGTGGGAGCAGATATCGGCTAAGATGAGGGAAAGGGGATTTGATCGCTCCCCGACTATGTGTACTGATAAGTGGAGGAACTTGCTCAAGGAGTTCAAGAAAGCAAAGCACCATGACAGGGGAAGTGGCTCTGCTAAGATGTCGTGTTACAAGGAGATTGAAGAAATTTTGAAGGAGAGAAGCAAAAGTACGCAGTACAAGAGTCCCACGCCACCCAAGATTGATTCATATATGCAATTCTCAGACAAAGGAATAGAGGATAATGGTCTATCGTTCGGACCTGTTGAAGGTGGCAGACCTTCACTCAATCTTGAAAGACAACTAGATCACGATGGACATCCCCTTGCCATCACAGCAGCTGATGCAGTTGCTGCAACGGGCATTCCACCTTGGAATTGGAGGGAGGCATCAGGAAATGGTGGGGAGAGTCAAGCATTTGGCGGGAGAGTAATATCAGTGAAGTGGGGGGACTACACAAGAAGAATTGGTGTTGATGGCACCTCAGAGGCAATCAAGGAGGCAATCAAGTCTGCATTCAGATTGAGAACTAAACGTGCATTTTGGTTAGAGGATGAGGACCAGGTTGTCAGAAGTCTGGACAGGGACATGCCTTTAGGAAACTACACTCTTCACCTTGATGAAGGTGTGGCTGTTAAAATCTGCCTATATGATGAATCTGACCACTTACCGGTACATACCGAAGACAAAGTTTTTTACATTGAAGAAGATTACCGAGATTTTTTAGCTCGTCGAGGCTGGACATGCCTTCGGGAGTTTGATGGGTATAGAAACATCGATAATATGGATGACCTCCGTCCTGGTGCAATATACCGTGGTTATATTCCCTCTGTATATACCAATATGGATTGTTGGCAGTATCGTCTCATCTGTACAGGAATTTAG 1434 46.3 MSPSTLLIGMMTPVQTKMLKLRLRLFTDLRKKGPSLNLRVRNENLKVVGSSFLHTPHARSPKSHLSRNFTEFPESETMYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPQPQPHQTHQQHQMMLGDSSGEDHEVKAPKKRAETWVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNLLKEFKKAKHHDRGSGSAKMSCYKEIEEILKERSKSTQYKSPTPPKIDSYMQFSDKGIEDNGLSFGPVEGGRPSLNLERQLDHDGHPLAITAADAVAATGIPPWNWREASGNGGESQAFGGRVISVKWGDYTRRIGVDGTSEAIKEAIKSAFRLRTKRAFWLEDEDQVVRSLDRDMPLGNYTLHLDEGVAVKICLYDESDHLPVHTEDKVFYIEEDYRDFLARRGWTCLREFDGYRNIDNMDDLRPGAIYRGYIPSVYTNMDCWQYRLICTGI 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29175714 29180657 - CrPI670011_08g016700.1 Cre08g1670 506588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1670 477 Gene3D - 150 212 - -
Cre08g1670 477 CDD GT1 148 213 - -
Cre08g1670 477 MobiDBLite consensus disorder prediction 109 131 - -
Cre08g1670 477 FunFam trihelix transcription factor GT-1 150 212 - -
Cre08g1670 477 SMART sant 146 208 IPR001005 -
Cre08g1670 477 MobiDBLite consensus disorder prediction 109 148 - -
Cre08g1670 477 MobiDBLite consensus disorder prediction 132 148 - -
Cre08g1670 477 ProSiteProfiles Myb-like domain profile. 142 206 IPR001005 -
Cre08g1670 477 PANTHER FI21293P1 104 450 - -
Cre08g1670 477 Pfam Myb/SANT-like DNA-binding domain 149 233 IPR044822 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54261 PF13837 Myb_DNA-bind_4 2.80E-20 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1670 - - - 0.0