Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1683 GTCATATTGCCATCCCTTCAACGGCTCCAAGCGAACGCCGAGGAGTTTGACAATGCTAAAGAGAAGCGTGTCAAGTCCGATAAGTCTAGCGAGAGAAGAGTCCAAGGAGATGGAAAACTCTCCAATGGTGATTTGGAGAGAGAAGATGAGTGTGGGATTTGCTTAGAACCTTCAACAAAAATGGTGTTGCCAAACTGCTGCCATTCAATGTGCATTAAATGTTACCACAATTGGAACACGAGATCGGAATCGTGCCCGTTTTGCCGAGGAAGCTTGAAGAGGATCAAATCAGAGGACTTATGGGTGCTAACTTGCAATGAGGATGTGGTTGATGCTGAAAAGGTTTCAAAGGAAGATCTTTCACGGTTCTATCTCTATATAAGCAGTCTACCAAAGGAATATCCGGATGCCCTTTTCTTACCCAACTCTGAAAGGCATTTTCACCAGGCTTTAAGCTGCCATGGCTATCCCAATGGAGCTATGGAGGGGCATTTTCCATATATAGTAAAGACTACAAAAGTACAAAAAGTGGCTGGAGCTGGTAGCCTGAGGCTATATAGGCCTTTGCCTTTGCCTTTGATAGCTGATGATGGGGGAGAAAGCTCCATCCTCATGGAAAATGGCTTCTCTTCTCCCCGAAGTGATGCGTTTCCTATCGGTCTTCGTGTTCTTGTTGTTGATGATGATCCAACATGGCTGAAAATCCTGGAAAAGATGCTCAAGAAGTGCTCTTACGAAGTGACTACATGTTGCTTGGCAAGGGAGGCTCTGAGCCTGCTTAGGGAGAGAAAAGATGGATATGATATCGTAATCAGCGACGTCAACATGCCCGATATGGATGGTTTTAAACTCCTTGAGCATGTGGGATTGGAAATGGACCTGCCAGTTATCATGATGTCAGTCGACGGAGAAACGAGCAGAGTAATGAAAGGGGTTCAACATGGCGCTTGTGATTATCTTCTAAAGCCGATACGAATGAAAGAACTTAGGAATATATGGCAGCATGTATTGCGAAAGAAGATACAAGAGGGAAGAGATATTGAAGGCCATGATGTTATTGAAGGCATCCACATCCTAAGAAATGTGGCAGATAGGTATGATGATAGCCAGTTCCTTAGAGGAGAGGAACTATTTTCAGTGAGGAAACGAAAAGATATTGATAAGCATGAGGACAAAGACTTTTGTGACACTTCTTCAACAAAGAAAGCAAGGGTTGTTTGGTCAGTTGATCTGCACCAGAAATTTGTAAAAGCAGTAAACCAGATAGGTTTTGACAAAGTTGGCCCTAAAAAGATACTTGATCTGATGAATGTCCCATGGCTAACTAGGGAAAATGTAGCAAGCCACTTGCAGAAATATCGCCTCTATTTGAGTCGACTGCAGAAAGAAAATGATCCAAAAGCTTGCTTTGTTGTTGGAATGAAACATACAGATTCGTGTTCGAAGGATGGAGATGGAAACTTTGGCCTTCGTAGCTCATTAGCCGTGCCACCAAATGATGTCACAAATAGCAGCTTCAGTTTTTCAGGTGATAACTTCCTGCTACAGAATGTTGATTCCATAGGCTGTGAAGTTGATAGGAAAAGGGTTGTTCAAGAGCATACATCAGAGCCAAAAAGAGCTGCTGCTAGGAGTGTTCCTGAACCGATAAAGTCCAGGTGTACTCAGATGAAATTCAACAACTCTATTCACTCTGTTGAACCTGAAGGGAAGTTTGCAGCATTTGACCCAAGCAACCGAAGCTGTTATCCTTGGGTTGAAGCTCCAGAAATCAAGTTCAAACAAGAAAGCAAGCCACTTGTGCATTTAGAAGGAGATTTCAATCAGTTCCCTCCAACGGTTCCACCACACCAAGTTCAAATGGACCCACTACAATCAATTTCGTCCATTAGTTCTGGACGGTCAGCAACGGAGAAAGATATAGCAAACTCCATTGAAAGTAAGCCTCCATATTCTGAGGACTATAGCCAACAAATGGTCCATTTAAATCTACCGAAAACTCCAACTGATTCATTTTCTGGCAAGGCTAAGAGTTTCAATGAGATGAATGACCATTTTGATCCCAATTCAACTACTACTGCTCCAATGGGCAAAAACCAGAATTTCAATCTTAGCTGCATTTCAACTGATTTAGGAAGTGGGTTACCTTTTGCAACCATTGATGAAGATTTGCAGGGCTATTTACTTCAAGATGGCTGCTATCCAAAGGACCTTGAACATCAGATTATAGAGTTTCCAGATTATGGTGATCCAGGCATCTTCACTGAAGTTCCTACTCACCTTTACGATGCAATGAGGTTTGGCTATGATTATTCCTACGACCCAACTGAGTATCCGGTGATAGATGAAGGCCTATTTATTGCATGA 2367 42.63 VILPSLQRLQANAEEFDNAKEKRVKSDKSSERRVQGDGKLSNGDLEREDECGICLEPSTKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLKRIKSEDLWVLTCNEDVVDAEKVSKEDLSRFYLYISSLPKEYPDALFLPNSERHFHQALSCHGYPNGAMEGHFPYIVKTTKVQKVAGAGSLRLYRPLPLPLIADDGGESSILMENGFSSPRSDAFPIGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEGHDVIEGIHILRNVADRYDDSQFLRGEELFSVRKRKDIDKHEDKDFCDTSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKHTDSCSKDGDGNFGLRSSLAVPPNDVTNSSFSFSGDNFLLQNVDSIGCEVDRKRVVQEHTSEPKRAAARSVPEPIKSRCTQMKFNNSIHSVEPEGKFAAFDPSNRSCYPWVEAPEIKFKQESKPLVHLEGDFNQFPPTVPPHQVQMDPLQSISSISSGRSATEKDIANSIESKPPYSEDYSQQMVHLNLPKTPTDSFSGKAKSFNEMNDHFDPNSTTTAPMGKNQNFNLSCISTDLGSGLPFATIDEDLQGYLLQDGCYPKDLEHQIIEFPDYGDPGIFTEVPTHLYDAMRFGYDYSYDPTEYPVIDEGLFIA 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29248526 29259342 - CrPI670011_08g016830.1 Cre08g1683 506601

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1683 788 NCBIfam myb-like DNA-binding domain, SHAQKYF class 402 455 IPR006447 GO:0003677(InterPro)
Cre08g1683 788 Pfam Response regulator receiver domain 223 331 IPR001789 GO:0000160(InterPro)
Cre08g1683 788 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 100 IPR013083 -
Cre08g1683 788 ProSiteProfiles Response regulatory domain profile. 222 337 IPR001789 GO:0000160(InterPro)
Cre08g1683 788 SUPERFAMILY RING/U-box 44 95 - -
Cre08g1683 788 CDD REC_typeB_ARR-like 223 337 - -
Cre08g1683 788 Gene3D - 221 374 - -
Cre08g1683 788 SUPERFAMILY CheY-like 220 345 IPR011006 -
Cre08g1683 788 FunFam RING/U-box superfamily protein 32 98 - -
Cre08g1683 788 MobiDBLite consensus disorder prediction 17 45 - -
Cre08g1683 788 SMART ring_2 51 88 IPR001841 -
Cre08g1683 788 ProSitePatterns Zinc finger RING-type signature. 66 75 IPR017907 -
Cre08g1683 788 PANTHER TWO-COMPONENT RESPONSE REGULATOR 215 542 IPR045279 GO:0009736(InterPro)
Cre08g1683 788 SMART REC_2 221 333 IPR001789 GO:0000160(InterPro)
Cre08g1683 788 ProSiteProfiles Zinc finger RING-type profile. 51 89 IPR001841 -
Cre08g1683 788 FunFam Two-component response regulator 398 461 - -
Cre08g1683 788 Pfam Myb-like DNA-binding domain 404 454 IPR001005 -
Cre08g1683 788 SUPERFAMILY Homeodomain-like 400 459 IPR009057 -
Cre08g1683 788 FunFam Two-component response regulator 221 376 - -
Cre08g1683 788 Gene3D - 398 461 - -
Cre08g1683 788 Pfam Zinc finger, C3HC4 type (RING finger) 48 94 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1683 K14491 - - csv:101204370 1112.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1683 Cre-Chr8:29248526 Cre11g0834 Cre-Chr11:5529015 2.50E-64 dispersed
Cre05g2785 Cre-Chr5:38592931 Cre08g1683 Cre-Chr8:29248526 1.80E-56 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g1683 . 256 460 Response Regulator Gene Family AT3G16857 53.8 2.4e-54 210.7
Cre11g0834 . 416 743 Response Regulator Gene Family AT4G31920 51.2 8.8e-80 295.0
Cre06g1238 . 29 284 Response Regulator Gene Family AT4G31920 55.5 1.1e-71 268.1
Cre05g0777 . 16 271 Response Regulator Gene Family AT4G31920 54.1 1.1e-69 261.5
Cre08g1683 . 215 463 Response Regulator Gene Family AT4G31920 50.4 4.8e-62 236.1
Cre05g0777 . 99 286 Response Regulator Gene Family AT1G67710 50.3 1.9e-40 164.1
Cre05g1811 . 93 255 Response Regulator Gene Family AT1G67710 53.8 3.2e-40 163.3
Cre06g2086 . 99 269 Response Regulator Gene Family AT1G67710 50.8 2.0e-37 154.1
Cre06g2086 . 16 390 Response Regulator Gene Family AT2G25180 56.2 3.6e-103 372.9
Cre05g0777 . 18 291 Response Regulator Gene Family AT2G25180 55.9 1.5e-77 287.7
Cre08g1683 . 215 460 Response Regulator Gene Family AT2G25180 55.6 9.8e-69 258.5
Cre06g1238 . 92 325 Response Regulator Gene Family AT2G01760 51.4 8.1e-54 208.0
Cre06g2086 . 79 303 Response Regulator Gene Family AT2G01760 52.4 1.6e-49 193.7
Cre08g1683 . 276 463 Response Regulator Gene Family AT2G01760 51.0 3.9e-48 189.1
Cre08g1683 . 213 462 Response Regulator Gene Family AT5G58080 50.6 7.3e-62 235.7
Cre06g1238 . 30 255 Response Regulator Gene Family AT4G16110 66.7 2.3e-79 293.9
Cre05g0777 . 18 242 Response Regulator Gene Family AT4G16110 67.0 8.9e-79 292.0
Cre05g1811 . 12 233 Response Regulator Gene Family AT4G16110 60.2 2.2e-61 234.2
Cre08g1683 . 214 439 Response Regulator Gene Family AT4G16110 54.5 1.0e-58 225.3
Cre06g2086 . 17 249 Response Regulator Gene Family AT4G16110 53.0 9.6e-57 218.8
Cre11g0834 . 421 669 Response Regulator Gene Family AT4G16110 51.7 1.9e-52 204.5
Cre06g2534 . 16 177 Response Regulator Gene Family AT3G48100 69.3 1.4e-53 206.5
Cre05g2664 . 29 162 Response Regulator Gene Family AT3G48100 71.6 3.2e-50 195.3
Cre09g1785 . 11 152 Response Regulator Gene Family AT3G48100 60.6 4.6e-41 164.9
Cre04g0540 . 10 156 Response Regulator Gene Family AT3G48100 57.1 2.3e-40 162.5
Cre05g2843 . 4 170 Response Regulator Gene Family AT3G48100 52.7 2.5e-39 159.1
Cre10g1736 . 3 156 Response Regulator Gene Family AT3G48100 52.6 2.8e-38 155.6
Cre07g0902 . 21 152 Response Regulator Gene Family AT3G48100 56.8 8.9e-37 150.6
Cre05g2664 . 1 201 Response Regulator Gene Family AT1G59940 60.0 4.4e-55 212.2
Cre06g2534 . 32 177 Response Regulator Gene Family AT1G59940 66.4 5.7e-47 185.3
Cre10g1736 . 5 154 Response Regulator Gene Family AT1G59940 56.7 2.3e-40 163.3
Cre09g1785 . 5 153 Response Regulator Gene Family AT1G59940 58.4 4.0e-40 162.5
Cre04g0540 . 11 154 Response Regulator Gene Family AT1G59940 56.3 9.8e-39 157.9
Cre05g2843 . 11 156 Response Regulator Gene Family AT1G59940 58.2 1.3e-38 157.5
Cre07g0902 . 16 151 Response Regulator Gene Family AT1G59940 60.3 4.9e-38 155.6
Cre05g2664 . 28 185 Response Regulator Gene Family AT1G10470 71.5 8.2e-54 207.6
Cre06g2534 . 32 161 Response Regulator Gene Family AT1G10470 72.3 2.8e-46 182.6
Cre10g1736 . 5 162 Response Regulator Gene Family AT1G10470 54.4 6.7e-40 161.4
Cre09g1785 . 5 158 Response Regulator Gene Family AT1G10470 57.1 3.3e-39 159.1
Cre04g0540 . 17 154 Response Regulator Gene Family AT1G10470 59.4 2.8e-38 156.0
Cre05g2843 . 11 178 Response Regulator Gene Family AT1G10470 51.2 1.4e-37 153.7
Cre07g0902 . 21 151 Response Regulator Gene Family AT1G10470 61.1 1.8e-37 153.3
Cre06g2534 . 16 177 Response Regulator Gene Family AT3G48100 69.3 1.4e-53 206.5
Cre05g2664 . 29 162 Response Regulator Gene Family AT3G48100 71.6 3.2e-50 195.3
Cre09g1785 . 11 152 Response Regulator Gene Family AT3G48100 60.6 4.6e-41 164.9
Cre04g0540 . 10 156 Response Regulator Gene Family AT3G48100 57.1 2.3e-40 162.5
Cre05g2843 . 4 170 Response Regulator Gene Family AT3G48100 52.7 2.5e-39 159.1
Cre10g1736 . 3 156 Response Regulator Gene Family AT3G48100 52.6 2.8e-38 155.6
Cre07g0902 . 21 152 Response Regulator Gene Family AT3G48100 56.8 8.9e-37 150.6
Cre06g2534 . 28 166 Response Regulator Gene Family AT5G62920 74.8 1.1e-50 196.8
Cre05g2664 . 25 175 Response Regulator Gene Family AT5G62920 66.9 1.0e-48 190.3
Cre09g1785 . 11 152 Response Regulator Gene Family AT5G62920 60.6 3.9e-40 161.8
Cre04g0540 . 12 156 Response Regulator Gene Family AT5G62920 57.2 1.1e-39 160.2
Cre10g1736 . 10 156 Response Regulator Gene Family AT5G62920 55.1 7.4e-39 157.5
Cre05g2843 . 11 173 Response Regulator Gene Family AT5G62920 51.2 2.4e-37 152.5
Cre06g2534 . 32 182 Response Regulator Gene Family AT1G19050 71.4 7.1e-51 197.6
Cre05g2664 . 23 185 Response Regulator Gene Family AT1G19050 58.5 7.6e-45 177.6
Cre04g0540 . 11 156 Response Regulator Gene Family AT1G19050 54.8 3.1e-38 155.6
Cre05g2843 . 8 161 Response Regulator Gene Family AT1G19050 53.2 3.1e-38 155.6
Cre10g1736 . 8 156 Response Regulator Gene Family AT1G19050 53.0 9.0e-38 154.1
Cre07g0902 . 21 152 Response Regulator Gene Family AT1G19050 60.6 2.0e-37 152.9
Cre09g1785 . 7 155 Response Regulator Gene Family AT1G19050 53.0 3.4e-37 152.1
Cre04g0540 . 8 264 Response Regulator Gene Family AT2G41310 53.1 2.4e-60 229.2
Cre10g1736 . 1 157 Response Regulator Gene Family AT2G41310 71.3 2.0e-54 209.5
Cre09g1785 . 1 154 Response Regulator Gene Family AT2G41310 63.9 1.4e-47 186.8
Cre08g0534 . 7 158 Response Regulator Gene Family AT2G41310 59.1 1.0e-42 170.6
Cre05g2664 . 25 158 Response Regulator Gene Family AT2G41310 59.2 1.9e-41 166.4
Cre06g2534 . 29 162 Response Regulator Gene Family AT2G41310 61.0 1.9e-41 166.4
Cre07g0902 . 15 152 Response Regulator Gene Family AT2G41310 55.6 6.2e-40 161.4
Cre04g0540 . 8 264 Response Regulator Gene Family AT3G57040 53.1 1.9e-63 239.6
Cre10g1736 . 1 157 Response Regulator Gene Family AT3G57040 73.9 6.4e-56 214.5
Cre05g2843 . 4 160 Response Regulator Gene Family AT3G57040 64.8 2.0e-49 193.0
Cre09g1785 . 8 154 Response Regulator Gene Family AT3G57040 66.7 2.6e-49 192.6
Cre08g0534 . 11 174 Response Regulator Gene Family AT3G57040 56.4 2.1e-43 172.9
Cre05g2664 . 25 158 Response Regulator Gene Family AT3G57040 59.4 2.8e-43 172.6
Cre06g2534 . 28 171 Response Regulator Gene Family AT3G57040 58.2 1.2e-41 167.2
Cre07g0902 . 18 152 Response Regulator Gene Family AT3G57040 56.7 4.2e-39 158.7
Cre06g2534 . 26 188 Response Regulator Gene Family AT1G74890 70.3 2.6e-53 205.7
Cre05g2664 . 25 187 Response Regulator Gene Family AT1G74890 61.2 6.2e-47 184.5
Cre05g2843 . 5 161 Response Regulator Gene Family AT1G74890 55.4 2.2e-39 159.5
Cre04g0540 . 12 172 Response Regulator Gene Family AT1G74890 52.1 2.8e-39 159.1
Cre09g1785 . 11 147 Response Regulator Gene Family AT1G74890 58.4 1.4e-38 156.8
Cre10g1736 . 8 154 Response Regulator Gene Family AT1G74890 54.4 2.4e-38 156.0
Cre07g0902 . 21 148 Response Regulator Gene Family AT1G74890 60.2 5.9e-37 151.4
Cre07g0902 . 21 153 Response Regulator Gene Family AT2G40670 70.1 2.2e-47 185.7
Cre05g2664 . 26 159 Response Regulator Gene Family AT2G40670 56.9 4.5e-40 161.4
Cre10g1736 . 6 156 Response Regulator Gene Family AT2G40670 54.6 7.7e-40 160.6
Cre06g2534 . 32 163 Response Regulator Gene Family AT2G40670 60.0 3.3e-38 155.2
Cre04g0540 . 13 156 Response Regulator Gene Family AT2G40670 51.7 8.0e-37 150.6
Cre07g0902 . 21 153 Response Regulator Gene Family AT3G56380 70.9 9.4e-48 186.8
Cre06g2534 . 18 163 Response Regulator Gene Family AT3G56380 57.8 3.2e-40 161.8
Cre05g2664 . 23 159 Response Regulator Gene Family AT3G56380 52.9 4.2e-40 161.4
Cre10g1736 . 6 156 Response Regulator Gene Family AT3G56380 52.6 1.0e-38 156.8
Cre09g1785 . 11 155 Response Regulator Gene Family AT3G56380 54.8 6.8e-38 154.1
Cre08g1683 . 256 460 Response Regulator Gene Family AT3G16857 53.8 2.4e-54 210.7
Cre06g1238 . 30 255 Response Regulator Gene Family AT4G16110 66.7 2.3e-79 293.9
Cre05g0777 . 18 242 Response Regulator Gene Family AT4G16110 67.0 8.9e-79 292.0
Cre05g1811 . 12 233 Response Regulator Gene Family AT4G16110 60.2 2.2e-61 234.2
Cre08g1683 . 214 439 Response Regulator Gene Family AT4G16110 54.5 1.0e-58 225.3
Cre06g2086 . 17 249 Response Regulator Gene Family AT4G16110 53.0 9.6e-57 218.8
Cre11g0834 . 421 669 Response Regulator Gene Family AT4G16110 51.7 1.9e-52 204.5
Cre11g0834 . 416 743 Response Regulator Gene Family AT4G31920 51.2 8.8e-80 295.0
Cre06g1238 . 29 284 Response Regulator Gene Family AT4G31920 55.5 1.1e-71 268.1
Cre05g0777 . 16 271 Response Regulator Gene Family AT4G31920 54.1 1.1e-69 261.5
Cre08g1683 . 215 463 Response Regulator Gene Family AT4G31920 50.4 4.8e-62 236.1
Cre05g0777 . 99 286 Response Regulator Gene Family AT1G67710 50.3 1.9e-40 164.1
Cre05g1811 . 93 255 Response Regulator Gene Family AT1G67710 53.8 3.2e-40 163.3
Cre06g2086 . 99 269 Response Regulator Gene Family AT1G67710 50.8 2.0e-37 154.1
Cre06g2086 . 16 390 Response Regulator Gene Family AT2G25180 56.2 3.6e-103 372.9
Cre05g0777 . 18 291 Response Regulator Gene Family AT2G25180 55.9 1.5e-77 287.7
Cre08g1683 . 215 460 Response Regulator Gene Family AT2G25180 55.6 9.8e-69 258.5
Cre06g1238 . 92 325 Response Regulator Gene Family AT2G01760 51.4 8.1e-54 208.0
Cre06g2086 . 79 303 Response Regulator Gene Family AT2G01760 52.4 1.6e-49 193.7
Cre08g1683 . 276 463 Response Regulator Gene Family AT2G01760 51.0 3.9e-48 189.1
Cre08g1683 . 213 462 Response Regulator Gene Family AT5G58080 50.6 7.3e-62 235.7
Cre01g1541 . 598 1143 Response Regulator Gene Family AT5G61380 50.5 1.3e-140 497.3
Cre04g0965 . 38 205 Response Regulator Gene Family AT5G60100 68.6 3.6e-54 209.5
Cre09g2496 . 53 185 Response Regulator Gene Family AT5G60100 62.4 6.8e-45 178.7
Cre04g0965 . 67 205 Response Regulator Gene Family AT5G24470 55.4 3.8e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007972 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 3 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54262 PF00072 Response_reg 1.90E-24 CL0304 Cre TF