Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1683 GTCATATTGCCATCCCTTCAACGGCTCCAAGCGAACGCCGAGGAGTTTGACAATGCTAAAGAGAAGCGTGTCAAGTCCGATAAGTCTAGCGAGAGAAGAGTCCAAGGAGATGGAAAACTCTCCAATGGTGATTTGGAGAGAGAAGATGAGTGTGGGATTTGCTTAGAACCTTCAACAAAAATGGTGTTGCCAAACTGCTGCCATTCAATGTGCATTAAATGTTACCACAATTGGAACACGAGATCGGAATCGTGCCCGTTTTGCCGAGGAAGCTTGAAGAGGATCAAATCAGAGGACTTATGGGTGCTAACTTGCAATGAGGATGTGGTTGATGCTGAAAAGGTTTCAAAGGAAGATCTTTCACGGTTCTATCTCTATATAAGCAGTCTACCAAAGGAATATCCGGATGCCCTTTTCTTACCCAACTCTGAAAGGCATTTTCACCAGGCTTTAAGCTGCCATGGCTATCCCAATGGAGCTATGGAGGGGCATTTTCCATATATAGTAAAGACTACAAAAGTACAAAAAGTGGCTGGAGCTGGTAGCCTGAGGCTATATAGGCCTTTGCCTTTGCCTTTGATAGCTGATGATGGGGGAGAAAGCTCCATCCTCATGGAAAATGGCTTCTCTTCTCCCCGAAGTGATGCGTTTCCTATCGGTCTTCGTGTTCTTGTTGTTGATGATGATCCAACATGGCTGAAAATCCTGGAAAAGATGCTCAAGAAGTGCTCTTACGAAGTGACTACATGTTGCTTGGCAAGGGAGGCTCTGAGCCTGCTTAGGGAGAGAAAAGATGGATATGATATCGTAATCAGCGACGTCAACATGCCCGATATGGATGGTTTTAAACTCCTTGAGCATGTGGGATTGGAAATGGACCTGCCAGTTATCATGATGTCAGTCGACGGAGAAACGAGCAGAGTAATGAAAGGGGTTCAACATGGCGCTTGTGATTATCTTCTAAAGCCGATACGAATGAAAGAACTTAGGAATATATGGCAGCATGTATTGCGAAAGAAGATACAAGAGGGAAGAGATATTGAAGGCCATGATGTTATTGAAGGCATCCACATCCTAAGAAATGTGGCAGATAGGTATGATGATAGCCAGTTCCTTAGAGGAGAGGAACTATTTTCAGTGAGGAAACGAAAAGATATTGATAAGCATGAGGACAAAGACTTTTGTGACACTTCTTCAACAAAGAAAGCAAGGGTTGTTTGGTCAGTTGATCTGCACCAGAAATTTGTAAAAGCAGTAAACCAGATAGGTTTTGACAAAGTTGGCCCTAAAAAGATACTTGATCTGATGAATGTCCCATGGCTAACTAGGGAAAATGTAGCAAGCCACTTGCAGAAATATCGCCTCTATTTGAGTCGACTGCAGAAAGAAAATGATCCAAAAGCTTGCTTTGTTGTTGGAATGAAACATACAGATTCGTGTTCGAAGGATGGAGATGGAAACTTTGGCCTTCGTAGCTCATTAGCCGTGCCACCAAATGATGTCACAAATAGCAGCTTCAGTTTTTCAGGTGATAACTTCCTGCTACAGAATGTTGATTCCATAGGCTGTGAAGTTGATAGGAAAAGGGTTGTTCAAGAGCATACATCAGAGCCAAAAAGAGCTGCTGCTAGGAGTGTTCCTGAACCGATAAAGTCCAGGTGTACTCAGATGAAATTCAACAACTCTATTCACTCTGTTGAACCTGAAGGGAAGTTTGCAGCATTTGACCCAAGCAACCGAAGCTGTTATCCTTGGGTTGAAGCTCCAGAAATCAAGTTCAAACAAGAAAGCAAGCCACTTGTGCATTTAGAAGGAGATTTCAATCAGTTCCCTCCAACGGTTCCACCACACCAAGTTCAAATGGACCCACTACAATCAATTTCGTCCATTAGTTCTGGACGGTCAGCAACGGAGAAAGATATAGCAAACTCCATTGAAAGTAAGCCTCCATATTCTGAGGACTATAGCCAACAAATGGTCCATTTAAATCTACCGAAAACTCCAACTGATTCATTTTCTGGCAAGGCTAAGAGTTTCAATGAGATGAATGACCATTTTGATCCCAATTCAACTACTACTGCTCCAATGGGCAAAAACCAGAATTTCAATCTTAGCTGCATTTCAACTGATTTAGGAAGTGGGTTACCTTTTGCAACCATTGATGAAGATTTGCAGGGCTATTTACTTCAAGATGGCTGCTATCCAAAGGACCTTGAACATCAGATTATAGAGTTTCCAGATTATGGTGATCCAGGCATCTTCACTGAAGTTCCTACTCACCTTTACGATGCAATGAGGTTTGGCTATGATTATTCCTACGACCCAACTGAGTATCCGGTGATAGATGAAGGCCTATTTATTGCATGA 2367 42.63 VILPSLQRLQANAEEFDNAKEKRVKSDKSSERRVQGDGKLSNGDLEREDECGICLEPSTKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLKRIKSEDLWVLTCNEDVVDAEKVSKEDLSRFYLYISSLPKEYPDALFLPNSERHFHQALSCHGYPNGAMEGHFPYIVKTTKVQKVAGAGSLRLYRPLPLPLIADDGGESSILMENGFSSPRSDAFPIGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEGHDVIEGIHILRNVADRYDDSQFLRGEELFSVRKRKDIDKHEDKDFCDTSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKHTDSCSKDGDGNFGLRSSLAVPPNDVTNSSFSFSGDNFLLQNVDSIGCEVDRKRVVQEHTSEPKRAAARSVPEPIKSRCTQMKFNNSIHSVEPEGKFAAFDPSNRSCYPWVEAPEIKFKQESKPLVHLEGDFNQFPPTVPPHQVQMDPLQSISSISSGRSATEKDIANSIESKPPYSEDYSQQMVHLNLPKTPTDSFSGKAKSFNEMNDHFDPNSTTTAPMGKNQNFNLSCISTDLGSGLPFATIDEDLQGYLLQDGCYPKDLEHQIIEFPDYGDPGIFTEVPTHLYDAMRFGYDYSYDPTEYPVIDEGLFIA 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29248526 29259342 - CrPI670011_08g016830.1 Cre08g1683 506601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1683 788 NCBIfam myb-like DNA-binding domain, SHAQKYF class 402 455 IPR006447 GO:0003677(InterPro)
Cre08g1683 788 Pfam Response regulator receiver domain 223 331 IPR001789 GO:0000160(InterPro)
Cre08g1683 788 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 100 IPR013083 -
Cre08g1683 788 ProSiteProfiles Response regulatory domain profile. 222 337 IPR001789 GO:0000160(InterPro)
Cre08g1683 788 SUPERFAMILY RING/U-box 44 95 - -
Cre08g1683 788 CDD REC_typeB_ARR-like 223 337 - -
Cre08g1683 788 Gene3D - 221 374 - -
Cre08g1683 788 SUPERFAMILY CheY-like 220 345 IPR011006 -
Cre08g1683 788 FunFam RING/U-box superfamily protein 32 98 - -
Cre08g1683 788 MobiDBLite consensus disorder prediction 17 45 - -
Cre08g1683 788 SMART ring_2 51 88 IPR001841 -
Cre08g1683 788 ProSitePatterns Zinc finger RING-type signature. 66 75 IPR017907 -
Cre08g1683 788 PANTHER TWO-COMPONENT RESPONSE REGULATOR 215 542 IPR045279 GO:0009736(InterPro)
Cre08g1683 788 SMART REC_2 221 333 IPR001789 GO:0000160(InterPro)
Cre08g1683 788 ProSiteProfiles Zinc finger RING-type profile. 51 89 IPR001841 -
Cre08g1683 788 FunFam Two-component response regulator 398 461 - -
Cre08g1683 788 Pfam Myb-like DNA-binding domain 404 454 IPR001005 -
Cre08g1683 788 SUPERFAMILY Homeodomain-like 400 459 IPR009057 -
Cre08g1683 788 FunFam Two-component response regulator 221 376 - -
Cre08g1683 788 Gene3D - 398 461 - -
Cre08g1683 788 Pfam Zinc finger, C3HC4 type (RING finger) 48 94 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1683 Cre-Chr8:29248526 Cre11g0834 Cre-Chr11:5529015 2.50E-64 dispersed
Cre05g2785 Cre-Chr5:38592931 Cre08g1683 Cre-Chr8:29248526 1.80E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54262 PF00072 Response_reg 1.90E-24 CL0304 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1683 K14491 - csv:101204370 1112.83