Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g1683 | GTCATATTGCCATCCCTTCAACGGCTCCAAGCGAACGCCGAGGAGTTTGACAATGCTAAAGAGAAGCGTGTCAAGTCCGATAAGTCTAGCGAGAGAAGAGTCCAAGGAGATGGAAAACTCTCCAATGGTGATTTGGAGAGAGAAGATGAGTGTGGGATTTGCTTAGAACCTTCAACAAAAATGGTGTTGCCAAACTGCTGCCATTCAATGTGCATTAAATGTTACCACAATTGGAACACGAGATCGGAATCGTGCCCGTTTTGCCGAGGAAGCTTGAAGAGGATCAAATCAGAGGACTTATGGGTGCTAACTTGCAATGAGGATGTGGTTGATGCTGAAAAGGTTTCAAAGGAAGATCTTTCACGGTTCTATCTCTATATAAGCAGTCTACCAAAGGAATATCCGGATGCCCTTTTCTTACCCAACTCTGAAAGGCATTTTCACCAGGCTTTAAGCTGCCATGGCTATCCCAATGGAGCTATGGAGGGGCATTTTCCATATATAGTAAAGACTACAAAAGTACAAAAAGTGGCTGGAGCTGGTAGCCTGAGGCTATATAGGCCTTTGCCTTTGCCTTTGATAGCTGATGATGGGGGAGAAAGCTCCATCCTCATGGAAAATGGCTTCTCTTCTCCCCGAAGTGATGCGTTTCCTATCGGTCTTCGTGTTCTTGTTGTTGATGATGATCCAACATGGCTGAAAATCCTGGAAAAGATGCTCAAGAAGTGCTCTTACGAAGTGACTACATGTTGCTTGGCAAGGGAGGCTCTGAGCCTGCTTAGGGAGAGAAAAGATGGATATGATATCGTAATCAGCGACGTCAACATGCCCGATATGGATGGTTTTAAACTCCTTGAGCATGTGGGATTGGAAATGGACCTGCCAGTTATCATGATGTCAGTCGACGGAGAAACGAGCAGAGTAATGAAAGGGGTTCAACATGGCGCTTGTGATTATCTTCTAAAGCCGATACGAATGAAAGAACTTAGGAATATATGGCAGCATGTATTGCGAAAGAAGATACAAGAGGGAAGAGATATTGAAGGCCATGATGTTATTGAAGGCATCCACATCCTAAGAAATGTGGCAGATAGGTATGATGATAGCCAGTTCCTTAGAGGAGAGGAACTATTTTCAGTGAGGAAACGAAAAGATATTGATAAGCATGAGGACAAAGACTTTTGTGACACTTCTTCAACAAAGAAAGCAAGGGTTGTTTGGTCAGTTGATCTGCACCAGAAATTTGTAAAAGCAGTAAACCAGATAGGTTTTGACAAAGTTGGCCCTAAAAAGATACTTGATCTGATGAATGTCCCATGGCTAACTAGGGAAAATGTAGCAAGCCACTTGCAGAAATATCGCCTCTATTTGAGTCGACTGCAGAAAGAAAATGATCCAAAAGCTTGCTTTGTTGTTGGAATGAAACATACAGATTCGTGTTCGAAGGATGGAGATGGAAACTTTGGCCTTCGTAGCTCATTAGCCGTGCCACCAAATGATGTCACAAATAGCAGCTTCAGTTTTTCAGGTGATAACTTCCTGCTACAGAATGTTGATTCCATAGGCTGTGAAGTTGATAGGAAAAGGGTTGTTCAAGAGCATACATCAGAGCCAAAAAGAGCTGCTGCTAGGAGTGTTCCTGAACCGATAAAGTCCAGGTGTACTCAGATGAAATTCAACAACTCTATTCACTCTGTTGAACCTGAAGGGAAGTTTGCAGCATTTGACCCAAGCAACCGAAGCTGTTATCCTTGGGTTGAAGCTCCAGAAATCAAGTTCAAACAAGAAAGCAAGCCACTTGTGCATTTAGAAGGAGATTTCAATCAGTTCCCTCCAACGGTTCCACCACACCAAGTTCAAATGGACCCACTACAATCAATTTCGTCCATTAGTTCTGGACGGTCAGCAACGGAGAAAGATATAGCAAACTCCATTGAAAGTAAGCCTCCATATTCTGAGGACTATAGCCAACAAATGGTCCATTTAAATCTACCGAAAACTCCAACTGATTCATTTTCTGGCAAGGCTAAGAGTTTCAATGAGATGAATGACCATTTTGATCCCAATTCAACTACTACTGCTCCAATGGGCAAAAACCAGAATTTCAATCTTAGCTGCATTTCAACTGATTTAGGAAGTGGGTTACCTTTTGCAACCATTGATGAAGATTTGCAGGGCTATTTACTTCAAGATGGCTGCTATCCAAAGGACCTTGAACATCAGATTATAGAGTTTCCAGATTATGGTGATCCAGGCATCTTCACTGAAGTTCCTACTCACCTTTACGATGCAATGAGGTTTGGCTATGATTATTCCTACGACCCAACTGAGTATCCGGTGATAGATGAAGGCCTATTTATTGCATGA | 2367 | 42.63 | VILPSLQRLQANAEEFDNAKEKRVKSDKSSERRVQGDGKLSNGDLEREDECGICLEPSTKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLKRIKSEDLWVLTCNEDVVDAEKVSKEDLSRFYLYISSLPKEYPDALFLPNSERHFHQALSCHGYPNGAMEGHFPYIVKTTKVQKVAGAGSLRLYRPLPLPLIADDGGESSILMENGFSSPRSDAFPIGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEGHDVIEGIHILRNVADRYDDSQFLRGEELFSVRKRKDIDKHEDKDFCDTSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKHTDSCSKDGDGNFGLRSSLAVPPNDVTNSSFSFSGDNFLLQNVDSIGCEVDRKRVVQEHTSEPKRAAARSVPEPIKSRCTQMKFNNSIHSVEPEGKFAAFDPSNRSCYPWVEAPEIKFKQESKPLVHLEGDFNQFPPTVPPHQVQMDPLQSISSISSGRSATEKDIANSIESKPPYSEDYSQQMVHLNLPKTPTDSFSGKAKSFNEMNDHFDPNSTTTAPMGKNQNFNLSCISTDLGSGLPFATIDEDLQGYLLQDGCYPKDLEHQIIEFPDYGDPGIFTEVPTHLYDAMRFGYDYSYDPTEYPVIDEGLFIA | 788 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 29248526 | 29259342 | - | CrPI670011_08g016830.1 | Cre08g1683 | 506601 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g1683 | 788 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 402 | 455 | IPR006447 | GO:0003677(InterPro) | |
Cre08g1683 | 788 | Pfam | Response regulator receiver domain | 223 | 331 | IPR001789 | GO:0000160(InterPro) | |
Cre08g1683 | 788 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 17 | 100 | IPR013083 | - | |
Cre08g1683 | 788 | ProSiteProfiles | Response regulatory domain profile. | 222 | 337 | IPR001789 | GO:0000160(InterPro) | |
Cre08g1683 | 788 | SUPERFAMILY | RING/U-box | 44 | 95 | - | - | |
Cre08g1683 | 788 | CDD | REC_typeB_ARR-like | 223 | 337 | - | - | |
Cre08g1683 | 788 | Gene3D | - | 221 | 374 | - | - | |
Cre08g1683 | 788 | SUPERFAMILY | CheY-like | 220 | 345 | IPR011006 | - | |
Cre08g1683 | 788 | FunFam | RING/U-box superfamily protein | 32 | 98 | - | - | |
Cre08g1683 | 788 | MobiDBLite | consensus disorder prediction | 17 | 45 | - | - | |
Cre08g1683 | 788 | SMART | ring_2 | 51 | 88 | IPR001841 | - | |
Cre08g1683 | 788 | ProSitePatterns | Zinc finger RING-type signature. | 66 | 75 | IPR017907 | - | |
Cre08g1683 | 788 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 215 | 542 | IPR045279 | GO:0009736(InterPro) | |
Cre08g1683 | 788 | SMART | REC_2 | 221 | 333 | IPR001789 | GO:0000160(InterPro) | |
Cre08g1683 | 788 | ProSiteProfiles | Zinc finger RING-type profile. | 51 | 89 | IPR001841 | - | |
Cre08g1683 | 788 | FunFam | Two-component response regulator | 398 | 461 | - | - | |
Cre08g1683 | 788 | Pfam | Myb-like DNA-binding domain | 404 | 454 | IPR001005 | - | |
Cre08g1683 | 788 | SUPERFAMILY | Homeodomain-like | 400 | 459 | IPR009057 | - | |
Cre08g1683 | 788 | FunFam | Two-component response regulator | 221 | 376 | - | - | |
Cre08g1683 | 788 | Gene3D | - | 398 | 461 | - | - | |
Cre08g1683 | 788 | Pfam | Zinc finger, C3HC4 type (RING finger) | 48 | 94 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre08g1683 | Cre-Chr8:29248526 | Cre11g0834 | Cre-Chr11:5529015 | 2.50E-64 | dispersed | |
Cre05g2785 | Cre-Chr5:38592931 | Cre08g1683 | Cre-Chr8:29248526 | 1.80E-56 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54262 | PF00072 | Response_reg | 1.90E-24 | CL0304 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g1683 | K14491 | - | csv:101204370 | 1112.83 |