Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1688 ATGGCTTCCATATCACCTTACCGCCCAAACTTTGTGTTCTCTTCATTTCCGACCCGTGTTCCGAACTCAAACCCTCTATTTCATGGAGTTCAATTCCGAGGTTTATCCCACCATAAGCCTTTCCTTCGCGGTTCCCTTGCTGTGGCGAGATTTGGGTTTAAACCCGAGTTCTTGCCTGACCCGGATAACGCCGAGGGCTTTGTTAGAGAGTTGTTTGGGAAAGCTGAGAGCGTTCTTTACACGATTGCCGACGCCGCCGTGTCTGCTTCGCCGGAGAATGTTACCACCGCCAAGCAGACTGACGATTGGTTTACGGGGATTACCAATTATATGGAGAGCGTCCTTAAAATTCTTAAGGATGGACTTTCTACTCTACATGTTCCTTATGCCTATGGTTTTGCTATTATACTCCTTACAGTTCTTGTTAAGGCTGCCACGTTTCCTTTAACAAAGAAGCAGGTAGAATCTGCAATGGCGATGCGTTCTTTGCAACCACAAGTGAAGGCTGTTCAACAACGCTATGCTGGGGATCAGGAGAGGATTCAACTTGAGACTGCTAGACTGTACAAATTAGCTGGCATAAACCCATTGGCAGGATGCCTGCCCACGTTGGCAACAATTCCTGTATGGATTGGACTATACAGGGCTCTTTCAAATGTGGCCAACGAGGGTCTCCTCACGGAAGGTTTTTTCTGGATACCCTCTCTAGCTGGTCCAACTACGATTGCCTCTCGACAAAATGGGAGTGGTATTTCTTGGCTCTTTCCATTTGTTGATGGTCACCCACCACTTGGGTGGTCAGATACCTTCGCGTATCTTGTCTTGCCTGTGTTGCTGGTCGTTTCGCAGTACATCTCTGTTCAAATTATGCAATCATCGCAGACTAATGATCCAAGCATGAAGAGTTCTCAAGCGATAACGAAGTTCCTACCATTAATGATTGGATATTTTGCACTTTCAGTTCCTTCTGGTCTAAGTCTTTATTGGCTTACTAATAACATCTTGAGCACAGCTCAGCAAGCATGGCTTCAAAAGTTAGGTGGTGCCAAATCCCCCGACAAACAGTTCATTGATGAAATCATCAAACAAGAACAAGAACAAGCCCGTGTCCAGAGCGAAGCGCCCAAGTTAAACTCAATCTCAAGTAGCACAGTAGCCCGACAAGAAGAGAAGCTGACAGCAGAAGGGCTAAAGCCTGGTGAAAGATTTAAACAGTTGAAGGAGCAAGAGGCTAGGTTAAGACAGCAAAGAGAAGAAGAAAAAAGGAAAGCTGAAAAGGTAGCCAAGGTTGAATCTCTGACAATAAATGACAGTGACAAGAGTGCAACTGTTGGAGTTGTTGTCAATGGCAGTCTTTCTAGGCAGGATGTAAAGGAGGATCGGAACTCCATTCCCACGACTTCTAGGCAAAGAACGGATGTGGACAACGAGCCAAGTGCAACTCAAGGAGAGGGAGTACTCGAGACATACACCAGGGTGGCCAAGGATGCCAAACTAAACGGAGAAGAACAAAGAGAGTAA 1521 46.09 MASISPYRPNFVFSSFPTRVPNSNPLFHGVQFRGLSHHKPFLRGSLAVARFGFKPEFLPDPDNAEGFVRELFGKAESVLYTIADAAVSASPENVTTAKQTDDWFTGITNYMESVLKILKDGLSTLHVPYAYGFAIILLTVLVKAATFPLTKKQVESAMAMRSLQPQVKAVQQRYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVANEGLLTEGFFWIPSLAGPTTIASRQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVQIMQSSQTNDPSMKSSQAITKFLPLMIGYFALSVPSGLSLYWLTNNILSTAQQAWLQKLGGAKSPDKQFIDEIIKQEQEQARVQSEAPKLNSISSSTVARQEEKLTAEGLKPGERFKQLKEQEARLRQQREEEKRKAEKVAKVESLTINDSDKSATVGVVVNGSLSRQDVKEDRNSIPTTSRQRTDVDNEPSATQGEGVLETYTRVAKDAKLNGEEQRE 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29289022 29293485 + CrPI670011_08g016880.1 Cre08g1688 506606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1688 506 Pfam 60Kd inner membrane protein 131 345 IPR028055 -
Cre08g1688 506 CDD UDM1_RNF168_RNF169-like 361 429 - -
Cre08g1688 506 CDD 5TM_YidC_Alb3 132 345 IPR047196 -
Cre08g1688 506 Coils Coil 403 430 - -
Cre08g1688 506 MobiDBLite consensus disorder prediction 467 486 - -
Cre08g1688 506 MobiDBLite consensus disorder prediction 368 398 - -
Cre08g1688 506 PANTHER OXA1 46 406 IPR001708 GO:0009535(PANTHER)|GO:0010027(PANTHER)|GO:0016020(InterPro)|GO:0032977(PANTHER)|GO:0032977(InterPro)|GO:0051205(PANTHER)|GO:0072598(PANTHER)
Cre08g1688 506 NCBIfam membrane protein insertase YidC 131 345 IPR028055 -
Cre08g1688 506 MobiDBLite consensus disorder prediction 368 389 - -
Cre08g1688 506 MobiDBLite consensus disorder prediction 447 506 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0477 Cre-Chr3:3202923 Cre08g1688 Cre-Chr8:29289022 5.20E-120 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1688 K03217 - csv:101205346 910.983