Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1690 ATGTGGTCTGTTTCATCTTCTCCAGTAGCCGATCCTGAAGTAGTTGTCCAAGAAGTTCTAACGAGCATCAACAATGCAACAACAAGAAGGAATTTGGGGTTCCTATCCTGCGGAACCGGGAACCCAATAGACGACTGTTGGCGGTGTGATCCCAATTGGGAGAAGAACCGAAAGCGGCTAGCCGACTGCGCCATTGGGTTCGGGAAGAGAGCCATCGGTGGCAAAAACGGCAAATTCTACATTGTCACTGACCCCTCCGATAAGGACGTGGTGAACCCAAAACCAGGCACTCTCCGCCACGCCGTAATCCAAAAGGAACCCTTATGGATCATCTTCAAACGCGACATGGTCATCAAATTAAAAGCAGAGCTTCTGATGAACTCTTTCAAAACCATCGACGGTCGCGGCGCGTCCGTCCACATTGCCGGTGGGCCTTGCATTACCATTCAATTTGTGACCAACATTATAATCCACGGCATCAACATTCACGATTGCAAGCAAGGTGGGAACACGTACGTCAGAGACTCGCCGGAGCATTACGGTTGGAGGACTTTGTCGGACGGCGACGGGGTTTCCATATTTGGGGGCAGCCATATTTGGGTGGACCATTGCTCTTTGTCCAATTGTCGAGATGGGCTAATTGATGCGATTCATGGGTCGACGGCTATCACTCTTTCCAACAATTACATGACCCACCATAACAAAGTTATGCTTTTAGGACATAGTGATTCCTATACTCAAGACAAGAACATGCAAGTCACCATTGCTTTTAACCATTTTGGTGAGGGTCTTGTGCAAAGAATGCCACGATGCCGTCATGGATATTTCCATGTGGTGAATAATGACTATACTCATTGGATAATGTACGCCATTGGTGGAAGTGCATCTCCTACTATCAATAGTCAAGGAAATAGATACCTTGCTCCCGATAACCGAGATAGAAAAGAGGTGACAAAACGAGAGGATGCACCGCAAAGCAAATGGAAGAATTGGAATTGGAGATCAGATGGAGATTTAATGTTGAATGGAGCATTCTTCACAAGGTCCGGTGCTGGAGCATCGTCTAGCTATGCGAGAGCATCGAGTTTGAGTGCGAAATCGTCGTCTCTAGTGAGTTCGATGACGGCAAAAGCGGGGGTGCTATCCTGCCGAAAAGGCTCCCGGTGTTAG 1170 47.86 MWSVSSSPVADPEVVVQEVLTSINNATTRRNLGFLSCGTGNPIDDCWRCDPNWEKNRKRLADCAIGFGKRAIGGKNGKFYIVTDPSDKDVVNPKPGTLRHAVIQKEPLWIIFKRDMVIKLKAELLMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNTYVRDSPEHYGWRTLSDGDGVSIFGGSHIWVDHCSLSNCRDGLIDAIHGSTAITLSNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPDNRDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSLVSSMTAKAGVLSCRKGSRC 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29305832 29307870 + CrPI670011_08g016900.1 Cre08g1690 506608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1690 389 PRINTS Pollen allergen Amb family signature 87 112 IPR018082 -
Cre08g1690 389 PRINTS Pollen allergen Amb family signature 123 139 IPR018082 -
Cre08g1690 389 PRINTS Pollen allergen Amb family signature 360 383 IPR018082 -
Cre08g1690 389 PRINTS Pollen allergen Amb family signature 267 286 IPR018082 -
Cre08g1690 389 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Cre08g1690 389 PRINTS Pollen allergen Amb family signature 63 80 IPR018082 -
Cre08g1690 389 PRINTS Pollen allergen Amb family signature 187 208 IPR018082 -
Cre08g1690 389 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Cre08g1690 389 PANTHER PECTATE LYASE 18-RELATED 26 386 IPR045032 GO:0030570(InterPro)
Cre08g1690 389 Pfam Pectate lyase 127 304 IPR002022 -
Cre08g1690 389 SUPERFAMILY Pectin lyase-like 21 383 IPR011050 -
Cre08g1690 389 FunFam Pectate lyase 40 382 - -
Cre08g1690 389 Gene3D - 40 382 IPR012334 -
Cre08g1690 389 SMART amb_all 115 312 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0634 Cre-Chr3:5246066 Cre08g1690 Cre-Chr8:29305832 8.50E-189 dispersed
Cre04g1794 Cre-Chr4:35853262 Cre08g1690 Cre-Chr8:29305832 1.30E-119 dispersed
Cre06g1543 Cre-Chr6:10356445 Cre08g1690 Cre-Chr8:29305832 4.30E-170 dispersed
Cre07g0529 Cre-Chr7:3139449 Cre08g1690 Cre-Chr8:29305832 6.50E-171 dispersed
Cre08g0734 Cre-Chr8:20400979 Cre08g1690 Cre-Chr8:29305832 1.60E-141 dispersed
Cre08g1690 Cre-Chr8:29305832 Cre10g1623 Cre-Chr10:30316806 7.20E-129 dispersed
Cre08g1690 Cre-Chr8:29305832 Cre05g0447 Cre-Chr5:4069326 6.20E-173 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1690 K01728 - csv:101208076 724.161