Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g1690 | ATGTGGTCTGTTTCATCTTCTCCAGTAGCCGATCCTGAAGTAGTTGTCCAAGAAGTTCTAACGAGCATCAACAATGCAACAACAAGAAGGAATTTGGGGTTCCTATCCTGCGGAACCGGGAACCCAATAGACGACTGTTGGCGGTGTGATCCCAATTGGGAGAAGAACCGAAAGCGGCTAGCCGACTGCGCCATTGGGTTCGGGAAGAGAGCCATCGGTGGCAAAAACGGCAAATTCTACATTGTCACTGACCCCTCCGATAAGGACGTGGTGAACCCAAAACCAGGCACTCTCCGCCACGCCGTAATCCAAAAGGAACCCTTATGGATCATCTTCAAACGCGACATGGTCATCAAATTAAAAGCAGAGCTTCTGATGAACTCTTTCAAAACCATCGACGGTCGCGGCGCGTCCGTCCACATTGCCGGTGGGCCTTGCATTACCATTCAATTTGTGACCAACATTATAATCCACGGCATCAACATTCACGATTGCAAGCAAGGTGGGAACACGTACGTCAGAGACTCGCCGGAGCATTACGGTTGGAGGACTTTGTCGGACGGCGACGGGGTTTCCATATTTGGGGGCAGCCATATTTGGGTGGACCATTGCTCTTTGTCCAATTGTCGAGATGGGCTAATTGATGCGATTCATGGGTCGACGGCTATCACTCTTTCCAACAATTACATGACCCACCATAACAAAGTTATGCTTTTAGGACATAGTGATTCCTATACTCAAGACAAGAACATGCAAGTCACCATTGCTTTTAACCATTTTGGTGAGGGTCTTGTGCAAAGAATGCCACGATGCCGTCATGGATATTTCCATGTGGTGAATAATGACTATACTCATTGGATAATGTACGCCATTGGTGGAAGTGCATCTCCTACTATCAATAGTCAAGGAAATAGATACCTTGCTCCCGATAACCGAGATAGAAAAGAGGTGACAAAACGAGAGGATGCACCGCAAAGCAAATGGAAGAATTGGAATTGGAGATCAGATGGAGATTTAATGTTGAATGGAGCATTCTTCACAAGGTCCGGTGCTGGAGCATCGTCTAGCTATGCGAGAGCATCGAGTTTGAGTGCGAAATCGTCGTCTCTAGTGAGTTCGATGACGGCAAAAGCGGGGGTGCTATCCTGCCGAAAAGGCTCCCGGTGTTAG | 1170 | 47.86 | MWSVSSSPVADPEVVVQEVLTSINNATTRRNLGFLSCGTGNPIDDCWRCDPNWEKNRKRLADCAIGFGKRAIGGKNGKFYIVTDPSDKDVVNPKPGTLRHAVIQKEPLWIIFKRDMVIKLKAELLMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNTYVRDSPEHYGWRTLSDGDGVSIFGGSHIWVDHCSLSNCRDGLIDAIHGSTAITLSNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPDNRDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSLVSSMTAKAGVLSCRKGSRC | 389 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 29305832 | 29307870 | + | CrPI670011_08g016900.1 | Cre08g1690 | 506608 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g1690 | 389 | PRINTS | Pollen allergen Amb family signature | 87 | 112 | IPR018082 | - | |
Cre08g1690 | 389 | PRINTS | Pollen allergen Amb family signature | 123 | 139 | IPR018082 | - | |
Cre08g1690 | 389 | PRINTS | Pollen allergen Amb family signature | 360 | 383 | IPR018082 | - | |
Cre08g1690 | 389 | PRINTS | Pollen allergen Amb family signature | 267 | 286 | IPR018082 | - | |
Cre08g1690 | 389 | PRINTS | Pollen allergen Amb family signature | 331 | 355 | IPR018082 | - | |
Cre08g1690 | 389 | PRINTS | Pollen allergen Amb family signature | 63 | 80 | IPR018082 | - | |
Cre08g1690 | 389 | PRINTS | Pollen allergen Amb family signature | 187 | 208 | IPR018082 | - | |
Cre08g1690 | 389 | PRINTS | Pollen allergen Amb family signature | 289 | 308 | IPR018082 | - | |
Cre08g1690 | 389 | PANTHER | PECTATE LYASE 18-RELATED | 26 | 386 | IPR045032 | GO:0030570(InterPro) | |
Cre08g1690 | 389 | Pfam | Pectate lyase | 127 | 304 | IPR002022 | - | |
Cre08g1690 | 389 | SUPERFAMILY | Pectin lyase-like | 21 | 383 | IPR011050 | - | |
Cre08g1690 | 389 | FunFam | Pectate lyase | 40 | 382 | - | - | |
Cre08g1690 | 389 | Gene3D | - | 40 | 382 | IPR012334 | - | |
Cre08g1690 | 389 | SMART | amb_all | 115 | 312 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre03g0634 | Cre-Chr3:5246066 | Cre08g1690 | Cre-Chr8:29305832 | 8.50E-189 | dispersed | |
Cre04g1794 | Cre-Chr4:35853262 | Cre08g1690 | Cre-Chr8:29305832 | 1.30E-119 | dispersed | |
Cre06g1543 | Cre-Chr6:10356445 | Cre08g1690 | Cre-Chr8:29305832 | 4.30E-170 | dispersed | |
Cre07g0529 | Cre-Chr7:3139449 | Cre08g1690 | Cre-Chr8:29305832 | 6.50E-171 | dispersed | |
Cre08g0734 | Cre-Chr8:20400979 | Cre08g1690 | Cre-Chr8:29305832 | 1.60E-141 | dispersed | |
Cre08g1690 | Cre-Chr8:29305832 | Cre10g1623 | Cre-Chr10:30316806 | 7.20E-129 | dispersed | |
Cre08g1690 | Cre-Chr8:29305832 | Cre05g0447 | Cre-Chr5:4069326 | 6.20E-173 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g1690 | K01728 | - | csv:101208076 | 724.161 |