Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1718 ATGCCCACCGTCAGCCATCAAATTAGCTTCAGAATCGGAATAAGGGAGGTGACGATGAGGACTGGATCACCACTTGGATTGTTCATTTTGATCACCGCTCTTCTCTTACTTCAATTATCCACAGTGGCAGACCCCAGATCCCGGACCGTCAAGATACTATGTTCAACCGTGCTAGAGCACAATACAACCGCCTTTGTGCCCAATTTCGTGGCCACAATGCAAATAATCAGCGACCAAATGCGAACCGGTGGGTTTGGAGTCGCAGTTGCGGGTAAAGGCCCGGACGCCAACTACGGCCTTGCTCAATGTTACGGAGATTTGTCGCTGATGGACTGTGTGTTGTGTTATGCGGAAGCCCGTACTGTCCTTCCTCAATGCTTCCCTTTCAACGGCGGCCGGATTTTCCTGGATGGCTGCTTCATGAGGGCTGAGAACTACAGCTTTTATGACGAATTTTCGGGGCCTCTTGACAGGGCTGTGTGCGGTAACAATTCCATCACCAACTCCCTTTTTGGACAGTCGGCCAGGCAGGCTGTGGCCCGAGCAACCCAAACTGCACCCAACAATGGAGGGTATGCCAGAATTCAAGTGGCTCCCCCTGGAACCCCCAATGCCTCCGTTTACCTGTTGGCTCAGTGCTGGAGGAATTTGAATCGCACCTCCTGCACTTCCTGTTTGCAAAACGCCTCTGCTTCTATCTTGAAATGCTTGCCTCGATCCGAAGCAAGAGCCCTCAACACAGGTTGCTTCATGAGATACTCTAACCTTGACTTCTTAAATGCCGAAGCTTCAGCTTCAAGGTCAAGGGGTAATATCATAGAAATTGTAGTCTCCCTGGTGAGTTCTGTTGCTGTTTTAGTCGTTGGAGTGTTGATTGGAATCTACATCTGGAATAACAGATATGTAAAGAAGAAGCGAAGAGGTTCAAACGATGCAAACAAGATGGCAAAAACACTAAACAATAGTAGCTTGAATTTCAAATACTCTACCCTTGAAAAGGCAACAGGATCCTTTGCTGAGGCTAACAAGCTTGGACAAGGAGGATTTGGCACTGTTTATAAGGCAATTCTGTCGGACGGAAGAGAGATAGCTGTGAAGAGGCTTTTCTTCAACAACAAACATAGAGCAGCAGACTTTTACAATGAAGTAAACATAATCAGTAGTGTGGAGCACAAAAACTTAGTACGGTTGCTTGGTTGTAGTTGTTCTGGACCTGAAAGTCTGCTCGTCTATGAATACCTTGCCAACAAGAGTCTCGACCGCTTCATTTTCGATCGAGATAGAGGTAAATCGCTGAATTGGGAGAAGAGATTTGATATCATTGTGGGAACAGTTGAAGGTTTGGCTTACCTTCATGAGAACTCGAAAACCAAGATCATACACAGAGACATCAAGGCTAGTAACATCCTGCTAGACTCCAAGCTTCGAGCTAAAATAGCTGATTTTGGATTAGCTAGATCCTTTGAAGAAGATGAGAGTCATATCAGCACGGCCATTGCTGGAACCTTGGGATACATGGCGCCAGAGTATTTAGCTCATGGGCAGCTAACAGAAAAGGCAGATGTGTACAGTTTTGGTGTGGTTTTGCTGGAGACCGTGACCGGCATACAAAACAGTAGAAGCAAAACCTCTGACTACTTGGAAAGCATAGTACTAATTGCATGGAAGCACTTTCAATCGGGGACAGTGGAAAGGATATTGGATCCGAACCTTATGGTTGAGGAAGATGGGAGCATAAAAGAGGAGATATTGAGAGTGGTGCAGATAGGGCTTCTTTGCACACAGGAGACTGCATCTCTGCGACCCACAATGTCCAAGGTACTGCAGATGCTGATGAAGAAGGAAGAGGAACTTCCGGCGCCGACCAACCCCCCGTTCATGGACGAGAGGACAATGGAATTAAACGACACCAGTGGCACTGAGGATCCATCATGCTTCAACCTCACGAAAGCTTCTTCCTCAGCGGCCACCGTCACCCATAGTTCATTTCATCCCAGCCAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACCCTTCGGACTCAACAGAACCCCAGATTCCATGGCGATCCAGCTTGTTTATGCTTCCAAATATGTCCTATTTTCAATCATCACTATTCTTCTGCTGCTCGCAACTTTGACTCTGGGGAAGCCAAGAGATCAAACTGTGAGAGTCATCTGCGGGAAAGAACTGGAGCACAACACCACCGCCTACGTCCCAAACTTTTTTGGTTCCATGGAAAAAGTTAGACAACAAATCGGAACTTCAGGATTTGGAACCGCCGGTACAGGAATAGGACCTGATGCCAGCTATGGGCTTGCCCAATGCCATGGAGATCTCTCACCCCTTGAATGTGTGCTGTGTCATTCTCAAGCACGTACAATGCTTCCCCAATGCTTCCCTTTCAACGGCGGCCGAGCTTTCATCGATGGCTGCTTCCTGAGGTTCGAAAACTATACCTTTTTCGACGAATACAAAGGACCTGAAGACACTGCAGTTTGTGGGAACTTCACCCAAAATGACCCCAACTATAGACAAGCAGTCAAGGAGGCAGTGATGCAAGTGGTTAACGGTGCACCAGACAACAGAGGCTTTGCGAAAGCTCGAATGGCTGTGGCTGGGATGGCAAATGAGTCCGCCGCTTATGCTCTGGGTCAGTGCTGGAGAAGTTTGAACCGCAGCTCTTGCAGTTCATGTTTGTTAATTGCTTCTGCTTCAATGTTGCGATGTTTACCTCAATCTGAAGGACGAGCACTGAACACAGGCTGCTTCATGAGATATTCAAATACAGACTTCCTCAACAAGGACATCAAAAATAGTTCCAGAGGTGGCACAAGAACTGAATTGATAGTTTCAGTTTTGAGTTCTGTTGTTGTTTTGATAGTTGGCCTGGCGATTGGAGCTTATATCTGGAAGCGCAGACATATACAAAAGAAAAGGAAAGGAGGTTCAACTGATGTGAAGAAGTTTGCAAAAACTCTTCAAGATAGTAACTTGGAATTCAAGTACTCAACCCTTGAAAAAGCTACCAACAATTTCAGCCTTGATAACAAGATTGGACAGGGCGGGTTTGGCTCTGTTTATAAGGGAACTCTATCCGATGGAAGAGAAATTGCTGTGAAGAGATTCTTCTTTGATAACAGACATAGAGCAGCAGATTTCTACAATGAAGTAAACATGATCAGCAGCGTCGAACATAAAAATCTGGTAAGATTACTTGGATGCAGTTGTTCTGGACCTGAAAGCCTTCTTGTTTATGAATTCCTACCAAACAAGAGTCTCGATCGCTTCATTTTCGATACCAGTAGCAGTAAAGCTCTTGATTGGGATAAGAGATACAACATCATCACTGGAACGGTTGAAGGTTTAATATATCTACACGAAAATCCAAAGATCAAAATCATACACAGGGATATAAAGGCGAGTAATATCTTGCTGGATCTAAAGCTTCAAGCGAAAATAGCAGATTTTGGATTAGCAAGGTCTTTCCAAGAAAGCAAGAGCCATATTAGCACGGCTGTTGCAGGAACCCTAGGATATATGGCTCCGGAGTATCTAGCTTATGGCCAGTTATCAGAAAAGGCCGACGTCTACAGCTTTGGAGTGCTTTTGTTAGAAATTGTTACAGGATTGCAATATAGTGGCATTCAAGTCTCCGGCAACATTGAAAGTCTGATCACTGCTATGTGGAGACATTTCCAAGCAGGCACAGTTGAGAGATTATTTGATCCAAATCTCAATCTTCAGAATCACTATAACAAGAAAGTGAAGGATGAGGTAAAGAGAGTGGTGCACATAGGGCTCTTATGCATCCAGGAGATTCCATCTCTACGACCAACAATGTCGAAGGTTCTACGAATGCTGACCATGGAGGAAGAGCATCTTCCTCCACCCACCAAACCACCCTTCACAGATGAGATGACCATGGAACTTGATGATTCATGCAAGTACTCACGATGTTATTCTAATACGGAGGGATCTTCTACTGCCACAGTCGGCCATAGTTCTTTCCATCCCAGATAA 4032 45.34 MPTVSHQISFRIGIREVTMRTGSPLGLFILITALLLLQLSTVADPRSRTVKILCSTVLEHNTTAFVPNFVATMQIISDQMRTGGFGVAVAGKGPDANYGLAQCYGDLSLMDCVLCYAEARTVLPQCFPFNGGRIFLDGCFMRAENYSFYDEFSGPLDRAVCGNNSITNSLFGQSARQAVARATQTAPNNGGYARIQVAPPGTPNASVYLLAQCWRNLNRTSCTSCLQNASASILKCLPRSEARALNTGCFMRYSNLDFLNAEASASRSRGNIIEIVVSLVSSVAVLVVGVLIGIYIWNNRYVKKKRRGSNDANKMAKTLNNSSLNFKYSTLEKATGSFAEANKLGQGGFGTVYKAILSDGREIAVKRLFFNNKHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEYLANKSLDRFIFDRDRGKSLNWEKRFDIIVGTVEGLAYLHENSKTKIIHRDIKASNILLDSKLRAKIADFGLARSFEEDESHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVVLLETVTGIQNSRSKTSDYLESIVLIAWKHFQSGTVERILDPNLMVEEDGSIKEEILRVVQIGLLCTQETASLRPTMSKVLQMLMKKEEELPAPTNPPFMDERTMELNDTSGTEDPSCFNLTKASSSAATVTHSSFHPSQSSSSSSSSSSSSSPFGLNRTPDSMAIQLVYASKYVLFSIITILLLLATLTLGKPRDQTVRVICGKELEHNTTAYVPNFFGSMEKVRQQIGTSGFGTAGTGIGPDASYGLAQCHGDLSPLECVLCHSQARTMLPQCFPFNGGRAFIDGCFLRFENYTFFDEYKGPEDTAVCGNFTQNDPNYRQAVKEAVMQVVNGAPDNRGFAKARMAVAGMANESAAYALGQCWRSLNRSSCSSCLLIASASMLRCLPQSEGRALNTGCFMRYSNTDFLNKDIKNSSRGGTRTELIVSVLSSVVVLIVGLAIGAYIWKRRHIQKKRKGGSTDVKKFAKTLQDSNLEFKYSTLEKATNNFSLDNKIGQGGFGSVYKGTLSDGREIAVKRFFFDNRHRAADFYNEVNMISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRFIFDTSSSKALDWDKRYNIITGTVEGLIYLHENPKIKIIHRDIKASNILLDLKLQAKIADFGLARSFQESKSHISTAVAGTLGYMAPEYLAYGQLSEKADVYSFGVLLLEIVTGLQYSGIQVSGNIESLITAMWRHFQAGTVERLFDPNLNLQNHYNKKVKDEVKRVVHIGLLCIQEIPSLRPTMSKVLRMLTMEEEHLPPPTKPPFTDEMTMELDDSCKYSRCYSNTEGSSTATVGHSSFHPR 1343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29476673 29483144 + CrPI670011_08g017180.1 Cre08g1718 506636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1718 1343 ProSiteProfiles Gnk2-homologous domain profile. 723 824 IPR002902 -
Cre08g1718 1343 SUPERFAMILY Protein kinase-like (PK-like) 323 632 IPR011009 -
Cre08g1718 1343 FunFam Cysteine-rich receptor-like protein kinase 3 833 935 - -
Cre08g1718 1343 Gene3D Phosphorylase Kinase; domain 1 298 413 - -
Cre08g1718 1343 Gene3D Phosphorylase Kinase; domain 1 976 1091 - -
Cre08g1718 1343 SUPERFAMILY Protein kinase-like (PK-like) 1000 1317 IPR011009 -
Cre08g1718 1343 SMART serkin_6 338 584 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g1718 1343 SMART serkin_6 1016 1293 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g1718 1343 ProSiteProfiles Gnk2-homologous domain profile. 47 148 IPR002902 -
Cre08g1718 1343 CDD STKc_IRAK 1022 1292 - -
Cre08g1718 1343 FunFam Cysteine-rich receptor-like protein kinase 2 1092 1299 - -
Cre08g1718 1343 FunFam Putative DUF26-domain receptor-like protein kinase family protein 986 1091 - -
Cre08g1718 1343 CDD STKc_IRAK 344 613 - -
Cre08g1718 1343 FunFam Cysteine-rich receptor-like protein kinase 3 157 258 - -
Cre08g1718 1343 ProSiteProfiles Gnk2-homologous domain profile. 828 935 IPR002902 -
Cre08g1718 1343 Gene3D Transferase(Phosphotransferase) domain 1 1092 1299 - -
Cre08g1718 1343 Gene3D Transferase(Phosphotransferase) domain 1 414 623 - -
Cre08g1718 1343 Pfam Salt stress response/antifungal 61 146 IPR002902 -
Cre08g1718 1343 Pfam Salt stress response/antifungal 737 822 IPR002902 -
Cre08g1718 1343 Pfam Salt stress response/antifungal 161 255 IPR002902 -
Cre08g1718 1343 Pfam Salt stress response/antifungal 837 932 IPR002902 -
Cre08g1718 1343 FunFam Cysteine-rich receptor-like protein kinase 2 723 824 - -
Cre08g1718 1343 MobiDBLite consensus disorder prediction 659 684 - -
Cre08g1718 1343 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524(InterPro)
Cre08g1718 1343 Gene3D - 47 148 IPR038408 -
Cre08g1718 1343 Gene3D - 157 258 IPR038408 -
Cre08g1718 1343 Gene3D - 724 824 IPR038408 -
Cre08g1718 1343 Gene3D - 834 935 IPR038408 -
Cre08g1718 1343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre08g1718 1343 MobiDBLite consensus disorder prediction 618 646 - -
Cre08g1718 1343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1137 1149 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre08g1718 1343 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 183 647 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cre08g1718 1343 Pfam Protein kinase domain 1017 1289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g1718 1343 Pfam Protein kinase domain 340 610 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g1718 1343 ProSiteProfiles Protein kinase domain profile. 1016 1293 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g1718 1343 FunFam Putative DUF26-domain receptor-like protein kinase family protein 307 413 - -
Cre08g1718 1343 ProSitePatterns Protein kinases ATP-binding region signature. 1022 1044 IPR017441 GO:0005524(InterPro)
Cre08g1718 1343 FunFam Cysteine-rich receptor-like protein kinase 2 47 148 - -
Cre08g1718 1343 FunFam Cysteine-rich receptor-like protein kinase 2 414 619 - -
Cre08g1718 1343 ProSiteProfiles Protein kinase domain profile. 338 627 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g1718 1343 ProSiteProfiles Gnk2-homologous domain profile. 153 258 IPR002902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1718 Cre-Chr8:29476673 Cre10g1544 Cre-Chr10:29422633 4.10E-131 dispersed
Cre05g2715 Cre-Chr5:38039352 Cre08g1718 Cre-Chr8:29476673 4.00E-132 wgd
Cre06g2581 Cre-Chr6:33503338 Cre08g1718 Cre-Chr8:29476673 7.10E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64364 PF00069 Pkinase 5.40E-47 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1718 - - - 0.0