Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1720 ATGGATCCAATAGAAGAAGCTTGGCAGATGATCTCGATGAGTTGCACAGTTTCACATCGGACTTTGCAAATGCTGGACAAAATTAGATGGAAGCTTAGAGGGTTGAATTTCCAAGAGGTACGTAGTAAGACAGCAAAGCTTGATTTTATGCATTCAGTCTCTGGGAACCAGCCATTTAATTGTCTCAAGGGGGAGTTAAATATTGTTATAAATGATGAGGATGCTATGTCATCAGATGATGAGCTTAACTGGGGAGAGAGGGAATTACAAGATGCTCAAATGAGGTTGGAAGACAAAGGTCTTAAAGATATGCTCTTAAGTAGATTTGGCAGCCACATTGGTACCTTGAAGCTGGAATTTTCAAAGAAGAAGAAGAAAGGAAAACTACCTAAAGAAGGAAGGAAAGTACTGTTCGAGTGGTGGAATGTTCACTATAAATGGCCATATCCTACGGAAGCTGATAAGGTTGCGCTGGCAGAGACAACAGGACTAGATCCCAAGCAAATTAACAATTGGTTTATTAATCAACGAAAGCGGCACTGGAAACCTTCTGAAAGTATGCAATATGCAAATATGGATAATGTGGCTGATCAATTTTACGCTAGGCTTGACTCTTGTGAATGA 624 40.06 MDPIEEAWQMISMSCTVSHRTLQMLDKIRWKLRGLNFQEVRSKTAKLDFMHSVSGNQPFNCLKGELNIVINDEDAMSSDDELNWGERELQDAQMRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLFEWWNVHYKWPYPTEADKVALAETTGLDPKQINNWFINQRKRHWKPSESMQYANMDNVADQFYARLDSCE 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29486087 29488665 - CrPI670011_08g017200.1 Cre08g1720 506638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1720 207 SMART ELK_2 100 121 IPR005539 GO:0003677(InterPro)
Cre08g1720 207 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 59 192 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre08g1720 207 Pfam Homeobox KN domain 140 179 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre08g1720 207 SMART HOX_1 122 187 IPR001356 GO:0003677(InterPro)
Cre08g1720 207 CDD homeodomain 134 184 IPR001356 GO:0003677(InterPro)
Cre08g1720 207 SUPERFAMILY Homeodomain-like 121 193 IPR009057 -
Cre08g1720 207 Gene3D - 119 196 - -
Cre08g1720 207 Pfam ELK domain 101 121 IPR005539 GO:0003677(InterPro)
Cre08g1720 207 ProSiteProfiles 'Homeobox' domain profile. 120 183 IPR001356 GO:0003677(InterPro)
Cre08g1720 207 ProSitePatterns 'Homeobox' domain signature. 158 181 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1625 Cre-Chr8:28747085 Cre08g1720 Cre-Chr8:29486087 1.10E-33 dispersed
Cre08g1720 Cre-Chr8:29486087 Cre09g2201 Cre-Chr9:41135487 2.90E-20 dispersed
Cre05g2714 Cre-Chr5:38032045 Cre08g1720 Cre-Chr8:29486087 3.60E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54264 PF05920 Homeobox_KN 2.30E-17 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1720 - - - 0.0