Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g1720 | ATGGATCCAATAGAAGAAGCTTGGCAGATGATCTCGATGAGTTGCACAGTTTCACATCGGACTTTGCAAATGCTGGACAAAATTAGATGGAAGCTTAGAGGGTTGAATTTCCAAGAGGTACGTAGTAAGACAGCAAAGCTTGATTTTATGCATTCAGTCTCTGGGAACCAGCCATTTAATTGTCTCAAGGGGGAGTTAAATATTGTTATAAATGATGAGGATGCTATGTCATCAGATGATGAGCTTAACTGGGGAGAGAGGGAATTACAAGATGCTCAAATGAGGTTGGAAGACAAAGGTCTTAAAGATATGCTCTTAAGTAGATTTGGCAGCCACATTGGTACCTTGAAGCTGGAATTTTCAAAGAAGAAGAAGAAAGGAAAACTACCTAAAGAAGGAAGGAAAGTACTGTTCGAGTGGTGGAATGTTCACTATAAATGGCCATATCCTACGGAAGCTGATAAGGTTGCGCTGGCAGAGACAACAGGACTAGATCCCAAGCAAATTAACAATTGGTTTATTAATCAACGAAAGCGGCACTGGAAACCTTCTGAAAGTATGCAATATGCAAATATGGATAATGTGGCTGATCAATTTTACGCTAGGCTTGACTCTTGTGAATGA | 624 | 40.06 | MDPIEEAWQMISMSCTVSHRTLQMLDKIRWKLRGLNFQEVRSKTAKLDFMHSVSGNQPFNCLKGELNIVINDEDAMSSDDELNWGERELQDAQMRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLFEWWNVHYKWPYPTEADKVALAETTGLDPKQINNWFINQRKRHWKPSESMQYANMDNVADQFYARLDSCE | 207 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 29486087 | 29488665 | - | CrPI670011_08g017200.1 | Cre08g1720 | 506638 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g1720 | 207 | SMART | ELK_2 | 100 | 121 | IPR005539 | GO:0003677(InterPro) | |
Cre08g1720 | 207 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 59 | 192 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cre08g1720 | 207 | Pfam | Homeobox KN domain | 140 | 179 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cre08g1720 | 207 | SMART | HOX_1 | 122 | 187 | IPR001356 | GO:0003677(InterPro) | |
Cre08g1720 | 207 | CDD | homeodomain | 134 | 184 | IPR001356 | GO:0003677(InterPro) | |
Cre08g1720 | 207 | SUPERFAMILY | Homeodomain-like | 121 | 193 | IPR009057 | - | |
Cre08g1720 | 207 | Gene3D | - | 119 | 196 | - | - | |
Cre08g1720 | 207 | Pfam | ELK domain | 101 | 121 | IPR005539 | GO:0003677(InterPro) | |
Cre08g1720 | 207 | ProSiteProfiles | 'Homeobox' domain profile. | 120 | 183 | IPR001356 | GO:0003677(InterPro) | |
Cre08g1720 | 207 | ProSitePatterns | 'Homeobox' domain signature. | 158 | 181 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre08g1625 | Cre-Chr8:28747085 | Cre08g1720 | Cre-Chr8:29486087 | 1.10E-33 | dispersed | |
Cre08g1720 | Cre-Chr8:29486087 | Cre09g2201 | Cre-Chr9:41135487 | 2.90E-20 | dispersed | |
Cre05g2714 | Cre-Chr5:38032045 | Cre08g1720 | Cre-Chr8:29486087 | 3.60E-50 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54264 | PF05920 | Homeobox_KN | 2.30E-17 | CL0123 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g1720 | - | - | - | 0.0 |