Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g1725 ATGGAACCACCTTTTCTGTTATGGAAACCGGTTTTTGTAGTTTTGGCACTCTTGGAACTTGCTTTTGCTACGCTATCTCCTTCTGGTGTGAACTACGAAGTTGTAGCTTTGATGGCCATAAAAAATGATTTAATAGATCCCCACAATGTTTTGGAGAACTGGGATTCTAATTCTGTGGATCCTTGTAGCTGGAGAATGGTCACCTGTTCTCCAGATGGATATGTTTCAGCTTTGGGGCTACCTAGCCAGAGTTTGTCCGGGGTCTTATCACCGGGGATTGGAAATCTCAGTAAGTTGGAATCAGTGTTGCTTCAGAACAATGACATTTCAGGACCAATTCCTGCAACCATTGGAAAGTTAGAGAACCTCCAGACTCTTGATCTCTCCAACAACGTATTTAGTGGCCAAATACCCAGCTCCCTCGGAGACTTGAAGAAGCTGAACTATTTGCGACTGAATAACAACAGCCTAACTGGACCTTGTCCTGAATCTCTATCCAGAGTTGAAGGTCTCACGCTCGTGGACCTTTCATACAACAACTTGAGTGGCTCCTTACCCAAAATATCAGCAAGAACATTCAAAATTGTTGGTAACCCTCTGATCTGTGGTCCAAGCAACTGTTCTGCTATCTTTCCAGAGCCATTGTCGTTTGCCCCAGATACTCTTGAAGGAAATTTGGGGTTTGGTAAGAGCCACCGCAAGGCAATTGCCTTTGGGGCAAGTTTTAGTGCTGCTTTTATTGTATTAGTCCTTATTGGACTACTTGTCTGGTGGAGATACAGACACAACCAGCAGATTTTCTTTGATGTAAATGATCAATATGACCCAGAGGTACGTTTGGGCCATTTGAGAAGGTACACATTCAAGGAACTTAGGGCAGCAACCGATCACTTCAACTCAAAGAATATCTTGGGAAGAGGTGGGTTTGGAATTGTGTACAAGGGATGCTTAAATGATGGGACTTTGGTAGCGGTCAAAAGGTTGAAGGATTATAACACTGCCGGTGGGGAGATCCAATTTCAGACTGAAGTAGAGATGATAAGCTTAGCTGTACACCGAAATCTTCTCAAGCTTTTTGGCTTCTGTTCTACTGAGAGTGAAAGACTTCTGGTTTACCCATTCATGCCCAATGGCAGCGTTGCATCTCGGTTAAGAGAGCATATCCATGGGCAGCCGGCTCTAGATTGGGCAATGAGAAAGAGAATAGCCATGGGCACAGCTAGAGGATTGGTGTACTTGCACGAGCAGTGTGACCCCAAAATTATTCATCGCGATGTGAAGGCCGCCAACATTCTCCTTGATGAAGACTTCGAGGCTGTCGTTGGAGACTTTGGGTTGGCCAAACTTTTGGATCACAGGGATTCTCATGTGACTACGGCGGTGCGTGGCACTGTTGGGCATATTGCCCCAGAATACTTATCAACAGGCCAATCATCAGAAAAGACTGATGTTTTTGGGTTTGGAATCTTGCTTTTGGAGTTAATTACTGGTCAGAAGGCTCTGGATTTTGGTCGAGGAGCAAACCAGAAAGGCGTGATGCTCGATTGGGTGAAAAAGTTGCATCAGGAAGGAAAGCTGAATATGATGGTGGATAAGGATCTAAGAGGCAAGTTTGACAGAGTTGAGTTAGAGGAAATGGTTCAGGTTGCCCTGTTATGCACTCAATTCAATCCTTCTCACCGGCCCAAAATGTCTGAAGTATTAAAAATGTTGGAAGGCGATGGTTTAGCTGAGAAATGGGAAGCATCACAGCACATTGAAACGCCAAGATACCGACCGTGCGAGAATCCCCCTCAACGGTACTCAGATTATATAGAAGAATCTTCTCTGATAGTAGAAGCCATGGAGCTTTCAGGCCCCAGATGA 1866 44.8 MEPPFLLWKPVFVVLALLELAFATLSPSGVNYEVVALMAIKNDLIDPHNVLENWDSNSVDPCSWRMVTCSPDGYVSALGLPSQSLSGVLSPGIGNLSKLESVLLQNNDISGPIPATIGKLENLQTLDLSNNVFSGQIPSSLGDLKKLNYLRLNNNSLTGPCPESLSRVEGLTLVDLSYNNLSGSLPKISARTFKIVGNPLICGPSNCSAIFPEPLSFAPDTLEGNLGFGKSHRKAIAFGASFSAAFIVLVLIGLLVWWRYRHNQQIFFDVNDQYDPEVRLGHLRRYTFKELRAATDHFNSKNILGRGGFGIVYKGCLNDGTLVAVKRLKDYNTAGGEIQFQTEVEMISLAVHRNLLKLFGFCSTESERLLVYPFMPNGSVASRLREHIHGQPALDWAMRKRIAMGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRGANQKGVMLDWVKKLHQEGKLNMMVDKDLRGKFDRVELEEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAEKWEASQHIETPRYRPCENPPQRYSDYIEESSLIVEAMELSGPR 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29510445 29513813 - CrPI670011_08g017250.1 Cre08g1725 506643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g1725 621 Gene3D Phosphorylase Kinase; domain 1 267 374 - -
Cre08g1725 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre08g1725 621 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Cre08g1725 621 Gene3D Ribonuclease Inhibitor 30 209 IPR032675 -
Cre08g1725 621 FunFam Somatic embryogenesis receptor-like kinase 1 375 591 - -
Cre08g1725 621 FunFam Somatic embryogenesis receptor kinase 1 267 374 - -
Cre08g1725 621 SMART serkin_6 298 571 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g1725 621 FunFam Putative LRR receptor-like serine/threonine-protein kinase 30 210 - -
Cre08g1725 621 Gene3D Transferase(Phosphotransferase) domain 1 375 590 - -
Cre08g1725 621 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524(InterPro)
Cre08g1725 621 Pfam Protein tyrosine and serine/threonine kinase 301 571 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre08g1725 621 SUPERFAMILY L domain-like 31 192 - -
Cre08g1725 621 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515(InterPro)
Cre08g1725 621 ProSiteProfiles Protein kinase domain profile. 298 581 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g1725 621 SUPERFAMILY Protein kinase-like (PK-like) 282 580 IPR011009 -
Cre08g1725 621 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 621 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g2068 Cre-Chr7:36241445 Cre08g1725 Cre-Chr8:29510445 2.20E-119 dispersed
Cre08g1725 Cre-Chr8:29510445 Cre11g0996 Cre-Chr11:7251364 7.10E-195 dispersed
Cre08g1725 Cre-Chr8:29510445 Cre04g1994 Cre-Chr4:37315942 1.10E-158 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64365 PF00069 Pkinase 2.10E-44 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g1725 - - - 0.0