Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0023 ATGGCATTTAGAGGGCGAGGACGAGGACGAGGTGGCGCCGGTGGGGCCTTTCAGTATGCCAAGCAAGAACCCTTTGAGCTTTTTCCAGAGAATGTAACTCTACCGAGCGTCAGTGATATGCCTGAAGAAAGAAGCTTGGCTTTACGTAACAACAAGTTTCTGAATTATTGGAAGGCCTCTCCTTTTTATCTAGAGGAAAATGTTATGAAAAAGGTGCAAAGAACTGAGATAGAGAAATTTTCCGATAGATCCAAGTCGAATAGTACGTTGAAGCGTGATTCCCTTGCACAAATTCTACAGCTCACATCCAGGAACTTTCCTGAAGAATTGGTTGAAGGTTTCAAAGGGAAGTTGCGGACCAAAAGAAAAGTTCAATGGAATCCCGGCTCAGGGCTGCAAAAATTGGACTTCCTAGAGAAGCGTGAAGAATCTCTCAAGGGACAGGATAAGGATGATAAGGAGAAGAAAGAAGGAGAAGAAGGTGAAGATGAAGATGAAGACGAAGACGATGCACAGTCCGAGGAACTTACTGATGATGATTATTATCAGAATGAATACTTCGACGACGATGAAGATGATTACAACATGGAAGAAGAAGGTGGAGGTATGGTTTTTTACTCTAATGGACTGATTAATATTATGAACCAGAATATTAGCAGAATGGAAAGTGGTGGTAAGATTTGGGGCTTGTTTCTCCAACTCAAAGAATTTAATTGGTGTAGGGCATTGGATTGTTTGGAAAAAATGTCGTGGCAAACGTACGTGGACGATCACCTGATGTGTGAGATTGAAGGAAACCATCTGACCTCCGCCGCAATCATCGGACACGACGGCAGTGTTTGGGCGCAGAGCTCCTCATTCCCTCAGTTTAAGGCGGAGGAGATATCGGCGATTATGAAGGATTTGGATGAGCCAGGTTCTCTTGCACCAACTGGATTACACCTGGGAGGCACTAAATACATGGTCATCCAAGGAGAGCCTGGATCCGTTGTTCGTGGCAAAAAGGGTGCTGGGGGAATCACTGTGAAGAAAACTGAGAAGGCTGTCATAATTGGGATTTATGATGAACCTTTGACTCCTGGACAATGCAATATGGTGGTTGAAAGGTTGGGAGATTACCTCATCGAACAGGCTTTGTAG 1140 44.3 MAFRGRGRGRGGAGGAFQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRTKRKVQWNPGSGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEDEDEDDAQSEELTDDDYYQNEYFDDDEDDYNMEEEGGGMVFYSNGLINIMNQNISRMESGGKIWGLFLQLKEFNWCRALDCLEKMSWQTYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSSSFPQFKAEEISAIMKDLDEPGSLAPTGLHLGGTKYMVIQGEPGSVVRGKKGAGGITVKKTEKAVIIGIYDEPLTPGQCNMVVERLGDYLIEQAL 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 562211 568559 - CrPI670011_09g000230.1 Cre09g0023 506691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0023 379 PRINTS Profilin signature 348 361 IPR005455 GO:0003779(InterPro)
Cre09g0023 379 PRINTS Profilin signature 361 378 IPR005455 GO:0003779(InterPro)
Cre09g0023 379 PRINTS Profilin signature 269 278 IPR005455 GO:0003779(InterPro)
Cre09g0023 379 PRINTS Profilin signature 251 260 IPR005455 GO:0003779(InterPro)
Cre09g0023 379 PRINTS Profilin signature 312 326 IPR005455 GO:0003779(InterPro)
Cre09g0023 379 PRINTS Profilin signature 288 308 IPR005455 GO:0003779(InterPro)
Cre09g0023 379 SUPERFAMILY Profilin (actin-binding protein) 250 377 IPR036140 -
Cre09g0023 379 CDD PROF 250 377 IPR005455 GO:0003779(InterPro)
Cre09g0023 379 PANTHER DNA-DIRECTED RNA POLYMERASE III 1 201 IPR024661 GO:0005666(PANTHER)|GO:0006383(InterPro)
Cre09g0023 379 FunFam Profilin 249 379 - -
Cre09g0023 379 Pfam Profilin 249 377 IPR048278 GO:0003779(InterPro)
Cre09g0023 379 SMART prof_2 249 379 IPR005455 GO:0003779(InterPro)
Cre09g0023 379 PRINTS Plant profilin signature 249 262 IPR005455 GO:0003779(InterPro)
Cre09g0023 379 PRINTS Plant profilin signature 275 288 IPR005455 GO:0003779(InterPro)
Cre09g0023 379 PRINTS Plant profilin signature 365 378 IPR005455 GO:0003779(InterPro)
Cre09g0023 379 PRINTS Plant profilin signature 352 365 IPR005455 GO:0003779(InterPro)
Cre09g0023 379 PRINTS Plant profilin signature 300 314 IPR005455 GO:0003779(InterPro)
Cre09g0023 379 PRINTS Plant profilin signature 319 328 IPR005455 GO:0003779(InterPro)
Cre09g0023 379 PRINTS Plant profilin signature 332 347 IPR005455 GO:0003779(InterPro)
Cre09g0023 379 Gene3D Dynein light chain 2a, cytoplasmic 247 378 - -
Cre09g0023 379 MobiDBLite consensus disorder prediction 143 199 - -
Cre09g0023 379 MobiDBLite consensus disorder prediction 143 157 - -
Cre09g0023 379 MobiDBLite consensus disorder prediction 158 198 - -
Cre09g0023 379 Pfam DNA-directed RNA polymerase III subunit Rpc31 20 197 IPR024661 GO:0006383(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g0023 Cre-Chr9:562211 Cre11g0695 Cre-Chr11:4050903 2.80E-61 dispersed
Cre07g1699 Cre-Chr7:32460181 Cre09g0023 Cre-Chr9:562211 2.50E-57 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0023 K05759 - csv:101204777 262.307