Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre09g0023 | ATGGCATTTAGAGGGCGAGGACGAGGACGAGGTGGCGCCGGTGGGGCCTTTCAGTATGCCAAGCAAGAACCCTTTGAGCTTTTTCCAGAGAATGTAACTCTACCGAGCGTCAGTGATATGCCTGAAGAAAGAAGCTTGGCTTTACGTAACAACAAGTTTCTGAATTATTGGAAGGCCTCTCCTTTTTATCTAGAGGAAAATGTTATGAAAAAGGTGCAAAGAACTGAGATAGAGAAATTTTCCGATAGATCCAAGTCGAATAGTACGTTGAAGCGTGATTCCCTTGCACAAATTCTACAGCTCACATCCAGGAACTTTCCTGAAGAATTGGTTGAAGGTTTCAAAGGGAAGTTGCGGACCAAAAGAAAAGTTCAATGGAATCCCGGCTCAGGGCTGCAAAAATTGGACTTCCTAGAGAAGCGTGAAGAATCTCTCAAGGGACAGGATAAGGATGATAAGGAGAAGAAAGAAGGAGAAGAAGGTGAAGATGAAGATGAAGACGAAGACGATGCACAGTCCGAGGAACTTACTGATGATGATTATTATCAGAATGAATACTTCGACGACGATGAAGATGATTACAACATGGAAGAAGAAGGTGGAGGTATGGTTTTTTACTCTAATGGACTGATTAATATTATGAACCAGAATATTAGCAGAATGGAAAGTGGTGGTAAGATTTGGGGCTTGTTTCTCCAACTCAAAGAATTTAATTGGTGTAGGGCATTGGATTGTTTGGAAAAAATGTCGTGGCAAACGTACGTGGACGATCACCTGATGTGTGAGATTGAAGGAAACCATCTGACCTCCGCCGCAATCATCGGACACGACGGCAGTGTTTGGGCGCAGAGCTCCTCATTCCCTCAGTTTAAGGCGGAGGAGATATCGGCGATTATGAAGGATTTGGATGAGCCAGGTTCTCTTGCACCAACTGGATTACACCTGGGAGGCACTAAATACATGGTCATCCAAGGAGAGCCTGGATCCGTTGTTCGTGGCAAAAAGGGTGCTGGGGGAATCACTGTGAAGAAAACTGAGAAGGCTGTCATAATTGGGATTTATGATGAACCTTTGACTCCTGGACAATGCAATATGGTGGTTGAAAGGTTGGGAGATTACCTCATCGAACAGGCTTTGTAG | 1140 | 44.3 | MAFRGRGRGRGGAGGAFQYAKQEPFELFPENVTLPSVSDMPEERSLALRNNKFLNYWKASPFYLEENVMKKVQRTEIEKFSDRSKSNSTLKRDSLAQILQLTSRNFPEELVEGFKGKLRTKRKVQWNPGSGLQKLDFLEKREESLKGQDKDDKEKKEGEEGEDEDEDEDDAQSEELTDDDYYQNEYFDDDEDDYNMEEEGGGMVFYSNGLINIMNQNISRMESGGKIWGLFLQLKEFNWCRALDCLEKMSWQTYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSSSFPQFKAEEISAIMKDLDEPGSLAPTGLHLGGTKYMVIQGEPGSVVRGKKGAGGITVKKTEKAVIIGIYDEPLTPGQCNMVVERLGDYLIEQAL | 379 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 562211 | 568559 | - | CrPI670011_09g000230.1 | Cre09g0023 | 506691 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre09g0023 | 379 | PRINTS | Profilin signature | 348 | 361 | IPR005455 | GO:0003779(InterPro) | |
Cre09g0023 | 379 | PRINTS | Profilin signature | 361 | 378 | IPR005455 | GO:0003779(InterPro) | |
Cre09g0023 | 379 | PRINTS | Profilin signature | 269 | 278 | IPR005455 | GO:0003779(InterPro) | |
Cre09g0023 | 379 | PRINTS | Profilin signature | 251 | 260 | IPR005455 | GO:0003779(InterPro) | |
Cre09g0023 | 379 | PRINTS | Profilin signature | 312 | 326 | IPR005455 | GO:0003779(InterPro) | |
Cre09g0023 | 379 | PRINTS | Profilin signature | 288 | 308 | IPR005455 | GO:0003779(InterPro) | |
Cre09g0023 | 379 | SUPERFAMILY | Profilin (actin-binding protein) | 250 | 377 | IPR036140 | - | |
Cre09g0023 | 379 | CDD | PROF | 250 | 377 | IPR005455 | GO:0003779(InterPro) | |
Cre09g0023 | 379 | PANTHER | DNA-DIRECTED RNA POLYMERASE III | 1 | 201 | IPR024661 | GO:0005666(PANTHER)|GO:0006383(InterPro) | |
Cre09g0023 | 379 | FunFam | Profilin | 249 | 379 | - | - | |
Cre09g0023 | 379 | Pfam | Profilin | 249 | 377 | IPR048278 | GO:0003779(InterPro) | |
Cre09g0023 | 379 | SMART | prof_2 | 249 | 379 | IPR005455 | GO:0003779(InterPro) | |
Cre09g0023 | 379 | PRINTS | Plant profilin signature | 249 | 262 | IPR005455 | GO:0003779(InterPro) | |
Cre09g0023 | 379 | PRINTS | Plant profilin signature | 275 | 288 | IPR005455 | GO:0003779(InterPro) | |
Cre09g0023 | 379 | PRINTS | Plant profilin signature | 365 | 378 | IPR005455 | GO:0003779(InterPro) | |
Cre09g0023 | 379 | PRINTS | Plant profilin signature | 352 | 365 | IPR005455 | GO:0003779(InterPro) | |
Cre09g0023 | 379 | PRINTS | Plant profilin signature | 300 | 314 | IPR005455 | GO:0003779(InterPro) | |
Cre09g0023 | 379 | PRINTS | Plant profilin signature | 319 | 328 | IPR005455 | GO:0003779(InterPro) | |
Cre09g0023 | 379 | PRINTS | Plant profilin signature | 332 | 347 | IPR005455 | GO:0003779(InterPro) | |
Cre09g0023 | 379 | Gene3D | Dynein light chain 2a, cytoplasmic | 247 | 378 | - | - | |
Cre09g0023 | 379 | MobiDBLite | consensus disorder prediction | 143 | 199 | - | - | |
Cre09g0023 | 379 | MobiDBLite | consensus disorder prediction | 143 | 157 | - | - | |
Cre09g0023 | 379 | MobiDBLite | consensus disorder prediction | 158 | 198 | - | - | |
Cre09g0023 | 379 | Pfam | DNA-directed RNA polymerase III subunit Rpc31 | 20 | 197 | IPR024661 | GO:0006383(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre09g0023 | Cre-Chr9:562211 | Cre11g0695 | Cre-Chr11:4050903 | 2.80E-61 | dispersed | |
Cre07g1699 | Cre-Chr7:32460181 | Cre09g0023 | Cre-Chr9:562211 | 2.50E-57 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre09g0023 | K05759 | - | csv:101204777 | 262.307 |