Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0034 ATGGCCATTTTCTTCCTCTTGTCGCACTTGAAACAAGATCAGTCTTTTTCGTTTTTCGTCATCGGTTTGGGATTTGAATTGATAATGGATCATTTGAATTGGAATGGTTATGGATCAAGAGTTGCGACGAAAACGACGACGTCGGCATCGTTTTGGAGCAATTACCAACAAGGAGTTGAAGAAAGGTTCATGATATCCAACTCAAATAATTCCAACTTCTTCAACTCACTTCAAGACTTCCCAATTAAAGAAGCTGCAACTTCTTCAGCTCTGGTTTCAAAAACAGGGGAAGCTTTGGTTATCAGTCCTCCATTGACAAGCCTTACAACATCTAGCAACATGGATGTTGTTGGCCTTGAATCACAGCTCCTCACCGGCTTCAACGGCGACAAATCGGCGACGGTAACGACGTGCTCTCTCGAGTCGTTGGACTGTTTGCTTTCAGCTACAAACAGCAACACAGACACATCAGTTGAAGATGATGGATCAGTTTCAATGATGTTAACAGATTACACCAATTTATGGAACTTCGGAGGAAATGCAGCAGCATCTTCAAGAGAATCTGAAAAGAATGGTTCAAATTCTACAAAGAGAAGCCATGACCAAACTCATTTCAAAGCTGCAGATTACTCTATTTTCTCAAATAACATCATAAATCTATCTGATTCCACTTCAGACAGTGGAGGATTTAGGATCATAACAGATCAGAATCCGCCAAAACAGAAGAAACCCAGATCAGAAAAGCCACCAAGTTCATCAAACATCAATTTTCAACAATCATGTTCATCAGGATCTTCTTGTATTGATCAAGAGCCTGATCCAGAGGCCATTGCACAAATGAAAGAGATGATCTACAGAGCAGCAGCTTTCAGGCCAGTGAATTTGGGGTTGGAAATGATAGAAAAGCCCAAAAGGAAGAATGTGAGAATTTCAACAGACCCACAAACTGTAGCAGCAAGGCAAAGGAGAGAGAGAATCAGTGAGAGAATTAGGGTTTTGCAAAGGCTTGTTCCTGGTGGAAGCAAAATGGATACAGCATCAATGCTTGATGAAGCTGCAAATTATCTCAAGTTCTTGAAGTCTCAGATCAAAGCTTTAGAGAATCTTGGGCAAAAGCTTGAGTCTTTGAATTGCCCTCCAACTAGCATAGCTTTCTCTTTCAACCCATCTTTTCCCATACAAACATCATCATCATCCTCCCATAATAATTTCACGCTCCAAAATCCCAACCACCTTATTAGCCAATATCCCCAAAACTAA 1260 40.79 MAIFFLLSHLKQDQSFSFFVIGLGFELIMDHLNWNGYGSRVATKTTTSASFWSNYQQGVEERFMISNSNNSNFFNSLQDFPIKEAATSSALVSKTGEALVISPPLTSLTTSSNMDVVGLESQLLTGFNGDKSATVTTCSLESLDCLLSATNSNTDTSVEDDGSVSMMLTDYTNLWNFGGNAAASSRESEKNGSNSTKRSHDQTHFKAADYSIFSNNIINLSDSTSDSGGFRIITDQNPPKQKKPRSEKPPSSSNINFQQSCSSGSSCIDQEPDPEAIAQMKEMIYRAAAFRPVNLGLEMIEKPKRKNVRISTDPQTVAARQRRERISERIRVLQRLVPGGSKMDTASMLDEAANYLKFLKSQIKALENLGQKLESLNCPPTSIAFSFNPSFPIQTSSSSSHNNFTLQNPNHLISQYPQN 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 680963 682432 - CrPI670011_09g000340.1 Cre09g0034 506702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0034 419 MobiDBLite consensus disorder prediction 248 269 - -
Cre09g0034 419 MobiDBLite consensus disorder prediction 396 419 - -
Cre09g0034 419 Coils Coil 349 376 - -
Cre09g0034 419 MobiDBLite consensus disorder prediction 182 201 - -
Cre09g0034 419 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 310 359 IPR011598 GO:0046983(InterPro)
Cre09g0034 419 MobiDBLite consensus disorder prediction 227 271 - -
Cre09g0034 419 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 315 375 IPR036638 GO:0046983(InterPro)
Cre09g0034 419 Gene3D - 315 378 IPR036638 GO:0046983(InterPro)
Cre09g0034 419 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 143 405 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0034 419 Pfam Helix-loop-helix DNA-binding domain 319 360 IPR011598 GO:0046983(InterPro)
Cre09g0034 419 SMART finulus 316 365 IPR011598 GO:0046983(InterPro)
Cre09g0034 419 FunFam BHLH transcription factor 313 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0783 Cre-Chr4:26439380 Cre09g0034 Cre-Chr9:680963 1.00E-19 dispersed
Cre05g2188 Cre-Chr5:33610785 Cre09g0034 Cre-Chr9:680963 4.40E-30 dispersed
Cre08g1546 Cre-Chr8:28107261 Cre09g0034 Cre-Chr9:680963 7.10E-29 dispersed
Cre09g0034 Cre-Chr9:680963 Cre10g1196 Cre-Chr10:24562922 1.20E-12 dispersed
Cre07g1710 Cre-Chr7:32552197 Cre09g0034 Cre-Chr9:680963 1.50E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54269 PF00010 HLH 7.90E-06 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0034 - - - 0.0