Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre09g0062 | ATGAGCCCCATCAATCACCACCAACACTTCTCCAAATCCACCTCCGCCGCCGTCACAACCACCACTTCCTCCAACACCACCACCACCACCACCCAAGCCTGCGCCGCCTGTAAGTACCAACGCCGTAAGTGCGCTCCCGATTGCATTCTCGCCCCTTATTTCCCTCACGATCGTCAACGTCAATTCTTAAACGCTCACAAACTCTTCGGCGTTAGCAATATCACTAAAATCATTAAGAATCTCGATCCGTTTGAGAAGGAAGAAGCAATGCGTACCATTATTTTTCAATCTGATGTTCGATCCGTCGATCCTGTTGGCGGTTGTTATCGGATTATTCGAGACCTTCAACGCCAAATTGAATATAGCAAGGCGGAGCTTGAGATCGTGCTTCATCAATTGGCTATTTGTAAACAGCAGGCCGCTGCTGCTGCGGCTGCTGCGGCCGCTGCGGCTATTCTTGAGGCGGATCCGATGAGTGGATACGGCGGAATTGAGCATCAATTTGTGGAAGGGTATGAAGGGGAAGGGTTTGTAGTTGGGGAAAATGAGAATGGGGAAAGTTTGGAAGATCAGGACGTGGAGGTTTGGGGAATTCAAGATTCGTGTTCTTCATTACAATTGAAACAAGCCGGCTCTGTTCATGATTTTCACGATATCAAGATCGATACAAATAATAATCACCTTCAACAACAACTTAAATTTCAACACGATCATCATCCTGATCTGGTTCATCAGAGTGAAGAACCTATGCTGAAGATGGACAATGTGATATTGAAAGAAGATTCTGACCCAATACAACAGGCTCAAGATCAAGAACTTAAAGGTGCTGCAGACACTTTATTTACCTTCCCAGCTTGTGATACTTAG | 867 | 46.02 | MSPINHHQHFSKSTSAAVTTTTSSNTTTTTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSDVRSVDPVGGCYRIIRDLQRQIEYSKAELEIVLHQLAICKQQAAAAAAAAAAAAILEADPMSGYGGIEHQFVEGYEGEGFVVGENENGESLEDQDVEVWGIQDSCSSLQLKQAGSVHDFHDIKIDTNNNHLQQQLKFQHDHHPDLVHQSEEPMLKMDNVILKEDSDPIQQAQDQELKGAADTLFTFPACDT | 288 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 890445 | 892301 | - | CrPI670011_09g000620.1 | Cre09g0062 | 506730 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre09g0062 | 288 | ProSiteProfiles | LOB domain profile. | 32 | 133 | IPR004883 | - | |
Cre09g0062 | 288 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 31 | 229 | - | - | |
Cre09g0062 | 288 | Pfam | Lateral organ boundaries (LOB) domain | 33 | 128 | IPR004883 | - | |
Cre09g0062 | 288 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g1314 | Cre-Chr2:16487204 | Cre09g0062 | Cre-Chr9:890445 | 2.80E-19 | dispersed | |
Cre08g1644 | Cre-Chr8:28961212 | Cre09g0062 | Cre-Chr9:890445 | 1.90E-26 | dispersed | |
Cre09g0062 | Cre-Chr9:890445 | Cre11g1551 | Cre-Chr11:24820525 | 3.00E-23 | dispersed | |
Cre09g0062 | Cre-Chr9:890445 | Cre01g0615 | Cre-Chr1:5414155 | 2.60E-27 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54270 | PF03195 | LOB | 9.40E-36 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre09g0062 | - | - | - | 0.0 |