Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0062 ATGAGCCCCATCAATCACCACCAACACTTCTCCAAATCCACCTCCGCCGCCGTCACAACCACCACTTCCTCCAACACCACCACCACCACCACCCAAGCCTGCGCCGCCTGTAAGTACCAACGCCGTAAGTGCGCTCCCGATTGCATTCTCGCCCCTTATTTCCCTCACGATCGTCAACGTCAATTCTTAAACGCTCACAAACTCTTCGGCGTTAGCAATATCACTAAAATCATTAAGAATCTCGATCCGTTTGAGAAGGAAGAAGCAATGCGTACCATTATTTTTCAATCTGATGTTCGATCCGTCGATCCTGTTGGCGGTTGTTATCGGATTATTCGAGACCTTCAACGCCAAATTGAATATAGCAAGGCGGAGCTTGAGATCGTGCTTCATCAATTGGCTATTTGTAAACAGCAGGCCGCTGCTGCTGCGGCTGCTGCGGCCGCTGCGGCTATTCTTGAGGCGGATCCGATGAGTGGATACGGCGGAATTGAGCATCAATTTGTGGAAGGGTATGAAGGGGAAGGGTTTGTAGTTGGGGAAAATGAGAATGGGGAAAGTTTGGAAGATCAGGACGTGGAGGTTTGGGGAATTCAAGATTCGTGTTCTTCATTACAATTGAAACAAGCCGGCTCTGTTCATGATTTTCACGATATCAAGATCGATACAAATAATAATCACCTTCAACAACAACTTAAATTTCAACACGATCATCATCCTGATCTGGTTCATCAGAGTGAAGAACCTATGCTGAAGATGGACAATGTGATATTGAAAGAAGATTCTGACCCAATACAACAGGCTCAAGATCAAGAACTTAAAGGTGCTGCAGACACTTTATTTACCTTCCCAGCTTGTGATACTTAG 867 46.02 MSPINHHQHFSKSTSAAVTTTTSSNTTTTTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSDVRSVDPVGGCYRIIRDLQRQIEYSKAELEIVLHQLAICKQQAAAAAAAAAAAAILEADPMSGYGGIEHQFVEGYEGEGFVVGENENGESLEDQDVEVWGIQDSCSSLQLKQAGSVHDFHDIKIDTNNNHLQQQLKFQHDHHPDLVHQSEEPMLKMDNVILKEDSDPIQQAQDQELKGAADTLFTFPACDT 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 890445 892301 - CrPI670011_09g000620.1 Cre09g0062 506730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0062 288 ProSiteProfiles LOB domain profile. 32 133 IPR004883 -
Cre09g0062 288 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 31 229 - -
Cre09g0062 288 Pfam Lateral organ boundaries (LOB) domain 33 128 IPR004883 -
Cre09g0062 288 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1314 Cre-Chr2:16487204 Cre09g0062 Cre-Chr9:890445 2.80E-19 dispersed
Cre08g1644 Cre-Chr8:28961212 Cre09g0062 Cre-Chr9:890445 1.90E-26 dispersed
Cre09g0062 Cre-Chr9:890445 Cre11g1551 Cre-Chr11:24820525 3.00E-23 dispersed
Cre09g0062 Cre-Chr9:890445 Cre01g0615 Cre-Chr1:5414155 2.60E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54270 PF03195 LOB 9.40E-36 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0062 - - - 0.0