Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre09g0064 | ATGATGATGAAAGGTAATTTTTTGTCTCAACAACAACAACAAATTGTAGTGATGGATGAAAATTTGTCCAATTTGACTTCTGCATCTGGTGAAGCTACTGCTAGTGTTTCTTCTGCCAATAAAACTGAATTCCCCAATCAATATTTTGCTCCACAAACCCAACCACCACCTCCTCCTAAGAAGAAGCGCAACCTCCCCGGAAATCCCGACCCAGATGCGGAAGTGATAGCGTTATCGCCAAAGACGTTGATGGCGACGAATAGATTCGTGTGCGAGATATGCAACAAAGGGTTTCAAAGAGATCAGAATCTTCAACTACATAGAAGAGGACACAATTTGCCATGGAAATTAAAGCAAAGATCAAACAAAGAAGTAATAAAGAAGAAGGTATATGTTTGTCCAGAAGTGAGTTGCGTACACCATGATCCATCAAGAGCACTTGGAGACCTAACAGGAATAAAGAAGCACTTCTGCAGAAAGCATGGTGAAAAGAAATGGAAATGTGATAAGTGCTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGATCTGTGGCACTAAGGAGTACAGATGTGACTGTGGAACTCTCTTTTCAAGAAGAGATAGTTTCATTACACATAGAGCTTTCTGTGATGCATTAGCAGATGAAAGTGCAAGATCAGCCATGGCATTAAACCCACTTCTCTCTTCTTACAACAACAATAATAATTCACAAGAATTCCTTAACAATAACAATAATAATTTTGCTCTCAAACGAGATTTCAACAATAACAACAGCAACAACAACAACAATTTGAGAGCGGAGATTCCGCCGTGGCTACAGCCATCAGACCTCCGAGCGGAGATCCTGATGGGAAGTGGGGAGGATGAGAATCCTCATAATAATCATAATCATGAAACCCTAAACCCTAACCCTAATCCGGGGTGCGGGGCCACAAGTGTTCCTCCTCCGGCGTACCAATCGTGTTCTGTTTCTTCTCCTCATATCTCAGCGACTGCACTGCTGCAGAAGGCAGCTCAGATGGGTGCGACCATGAGTAGTACCACTACCACGAGTGGCTCTATGCCAAGGCCCCACAAGCTTCTTCACGTGTCTACAGGTAATTTTGGGGAAATAGGATTATGGTCACGTGAAGTTGAAATGGGTAGAGGAGGAGGAGGAGGGGCTTTGAGTTGTAGTAGTAGTAGTTGTACTGATTATGGGAATAAAGCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCACCCACCACTTTTCTTCATGATATGATCAATTCCCTCTCTTCTCCTTCTGCTTCTCATCCTTTCTTCCATGATAATTCCTCTTTCAACGACCCCGCCACTTTCGCCGCTATGCATCATCACACCGCCGCTCCCACACCCGCCATCAACACCACCACCGCTGCCACTTCCGGCGGTCGTAGCGACGGTTTAACCAGAGATTTCTTGGGACTTCGCCCTCTTTCTCATGGTGATATTCTAAGCCTTACTGGATTTGGAAGTTGCATTGTTCCTAATTCCTCCAATCTTCAGTCTCAAATCCAGAAGCCATGGCAGGGTTAG | 1587 | 44.36 | MMMKGNFLSQQQQQIVVMDENLSNLTSASGEATASVSSANKTEFPNQYFAPQTQPPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAMALNPLLSSYNNNNNSQEFLNNNNNNFALKRDFNNNNSNNNNNLRAEIPPWLQPSDLRAEILMGSGEDENPHNNHNHETLNPNPNPGCGATSVPPPAYQSCSVSSPHISATALLQKAAQMGATMSSTTTTSGSMPRPHKLLHVSTGNFGEIGLWSREVEMGRGGGGGALSCSSSSCTDYGNKAASASASASASASASAPTTFLHDMINSLSSPSASHPFFHDNSSFNDPATFAAMHHHTAAPTPAINTTTAATSGGRSDGLTRDFLGLRPLSHGDILSLTGFGSCIVPNSSNLQSQIQKPWQG | 528 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 901632 | 904429 | - | CrPI670011_09g000640.1 | Cre09g0064 | 506732 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre09g0064 | 528 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 43 | 495 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cre09g0064 | 528 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 192 | 227 | - | - | |
Cre09g0064 | 528 | MobiDBLite | consensus disorder prediction | 46 | 72 | - | - | |
Cre09g0064 | 528 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 127 | 161 | - | - | |
Cre09g0064 | 528 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 165 | 189 | - | - | |
Cre09g0064 | 528 | SMART | c2h2final6 | 166 | 186 | IPR013087 | - | |
Cre09g0064 | 528 | SMART | c2h2final6 | 131 | 161 | IPR013087 | - | |
Cre09g0064 | 528 | SMART | c2h2final6 | 89 | 111 | IPR013087 | - | |
Cre09g0064 | 528 | MobiDBLite | consensus disorder prediction | 50 | 64 | - | - | |
Cre09g0064 | 528 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 91 | 111 | IPR013087 | - | |
Cre09g0064 | 528 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 89 | 111 | IPR013087 | - | |
Cre09g0064 | 528 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 144 | 223 | - | - | |
Cre09g0064 | 528 | SUPERFAMILY | beta-beta-alpha zinc fingers | 88 | 186 | IPR036236 | - | |
Cre09g0064 | 528 | Pfam | Zinc finger, C2H2 type | 89 | 111 | IPR013087 | - | |
Cre09g0064 | 528 | Gene3D | Classic Zinc Finger | 144 | 223 | - | - | |
Cre09g0064 | 528 | FunFam | protein indeterminate-domain 12-like | 68 | 137 | - | - | |
Cre09g0064 | 528 | MobiDBLite | consensus disorder prediction | 290 | 316 | - | - | |
Cre09g0064 | 528 | Gene3D | Classic Zinc Finger | 68 | 139 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g0982 | Cre-Chr4:28428145 | Cre09g0064 | Cre-Chr9:901632 | 4.30E-87 | dispersed | |
Cre09g0064 | Cre-Chr9:901632 | Cre10g2152 | Cre-Chr10:36064706 | 2.40E-87 | dispersed | |
Cre05g1957 | Cre-Chr5:31710814 | Cre09g0064 | Cre-Chr9:901632 | 2.90E-88 | wgd | |
Cre07g1736 | Cre-Chr7:32825636 | Cre09g0064 | Cre-Chr9:901632 | 1.10E-37 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54271 | PF00096 | zf-C2H2 | 0.0054 | CL0361 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre09g0064 | K25870 | - | csv:101220200 | 711.064 |