Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0064 ATGATGATGAAAGGTAATTTTTTGTCTCAACAACAACAACAAATTGTAGTGATGGATGAAAATTTGTCCAATTTGACTTCTGCATCTGGTGAAGCTACTGCTAGTGTTTCTTCTGCCAATAAAACTGAATTCCCCAATCAATATTTTGCTCCACAAACCCAACCACCACCTCCTCCTAAGAAGAAGCGCAACCTCCCCGGAAATCCCGACCCAGATGCGGAAGTGATAGCGTTATCGCCAAAGACGTTGATGGCGACGAATAGATTCGTGTGCGAGATATGCAACAAAGGGTTTCAAAGAGATCAGAATCTTCAACTACATAGAAGAGGACACAATTTGCCATGGAAATTAAAGCAAAGATCAAACAAAGAAGTAATAAAGAAGAAGGTATATGTTTGTCCAGAAGTGAGTTGCGTACACCATGATCCATCAAGAGCACTTGGAGACCTAACAGGAATAAAGAAGCACTTCTGCAGAAAGCATGGTGAAAAGAAATGGAAATGTGATAAGTGCTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGATCTGTGGCACTAAGGAGTACAGATGTGACTGTGGAACTCTCTTTTCAAGAAGAGATAGTTTCATTACACATAGAGCTTTCTGTGATGCATTAGCAGATGAAAGTGCAAGATCAGCCATGGCATTAAACCCACTTCTCTCTTCTTACAACAACAATAATAATTCACAAGAATTCCTTAACAATAACAATAATAATTTTGCTCTCAAACGAGATTTCAACAATAACAACAGCAACAACAACAACAATTTGAGAGCGGAGATTCCGCCGTGGCTACAGCCATCAGACCTCCGAGCGGAGATCCTGATGGGAAGTGGGGAGGATGAGAATCCTCATAATAATCATAATCATGAAACCCTAAACCCTAACCCTAATCCGGGGTGCGGGGCCACAAGTGTTCCTCCTCCGGCGTACCAATCGTGTTCTGTTTCTTCTCCTCATATCTCAGCGACTGCACTGCTGCAGAAGGCAGCTCAGATGGGTGCGACCATGAGTAGTACCACTACCACGAGTGGCTCTATGCCAAGGCCCCACAAGCTTCTTCACGTGTCTACAGGTAATTTTGGGGAAATAGGATTATGGTCACGTGAAGTTGAAATGGGTAGAGGAGGAGGAGGAGGGGCTTTGAGTTGTAGTAGTAGTAGTTGTACTGATTATGGGAATAAAGCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCACCCACCACTTTTCTTCATGATATGATCAATTCCCTCTCTTCTCCTTCTGCTTCTCATCCTTTCTTCCATGATAATTCCTCTTTCAACGACCCCGCCACTTTCGCCGCTATGCATCATCACACCGCCGCTCCCACACCCGCCATCAACACCACCACCGCTGCCACTTCCGGCGGTCGTAGCGACGGTTTAACCAGAGATTTCTTGGGACTTCGCCCTCTTTCTCATGGTGATATTCTAAGCCTTACTGGATTTGGAAGTTGCATTGTTCCTAATTCCTCCAATCTTCAGTCTCAAATCCAGAAGCCATGGCAGGGTTAG 1587 44.36 MMMKGNFLSQQQQQIVVMDENLSNLTSASGEATASVSSANKTEFPNQYFAPQTQPPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAMALNPLLSSYNNNNNSQEFLNNNNNNFALKRDFNNNNSNNNNNLRAEIPPWLQPSDLRAEILMGSGEDENPHNNHNHETLNPNPNPGCGATSVPPPAYQSCSVSSPHISATALLQKAAQMGATMSSTTTTSGSMPRPHKLLHVSTGNFGEIGLWSREVEMGRGGGGGALSCSSSSCTDYGNKAASASASASASASASAPTTFLHDMINSLSSPSASHPFFHDNSSFNDPATFAAMHHHTAAPTPAINTTTAATSGGRSDGLTRDFLGLRPLSHGDILSLTGFGSCIVPNSSNLQSQIQKPWQG 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 901632 904429 - CrPI670011_09g000640.1 Cre09g0064 506732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0064 528 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 495 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre09g0064 528 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 192 227 - -
Cre09g0064 528 MobiDBLite consensus disorder prediction 46 72 - -
Cre09g0064 528 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 127 161 - -
Cre09g0064 528 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 165 189 - -
Cre09g0064 528 SMART c2h2final6 166 186 IPR013087 -
Cre09g0064 528 SMART c2h2final6 131 161 IPR013087 -
Cre09g0064 528 SMART c2h2final6 89 111 IPR013087 -
Cre09g0064 528 MobiDBLite consensus disorder prediction 50 64 - -
Cre09g0064 528 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Cre09g0064 528 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Cre09g0064 528 FunFam protein indeterminate-domain 5, chloroplastic-like 144 223 - -
Cre09g0064 528 SUPERFAMILY beta-beta-alpha zinc fingers 88 186 IPR036236 -
Cre09g0064 528 Pfam Zinc finger, C2H2 type 89 111 IPR013087 -
Cre09g0064 528 Gene3D Classic Zinc Finger 144 223 - -
Cre09g0064 528 FunFam protein indeterminate-domain 12-like 68 137 - -
Cre09g0064 528 MobiDBLite consensus disorder prediction 290 316 - -
Cre09g0064 528 Gene3D Classic Zinc Finger 68 139 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0982 Cre-Chr4:28428145 Cre09g0064 Cre-Chr9:901632 4.30E-87 dispersed
Cre09g0064 Cre-Chr9:901632 Cre10g2152 Cre-Chr10:36064706 2.40E-87 dispersed
Cre05g1957 Cre-Chr5:31710814 Cre09g0064 Cre-Chr9:901632 2.90E-88 wgd
Cre07g1736 Cre-Chr7:32825636 Cre09g0064 Cre-Chr9:901632 1.10E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54271 PF00096 zf-C2H2 0.0054 CL0361 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0064 K25870 - csv:101220200 711.064