Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre09g0071 | ATGGCTGACCATTCTTCCAATCGCGATACTGATTCAGGGTTTGATCATGGCTCACCTCAACCACGTCTTTACAATCCCTACAAGGATCTCCAGGTTCCTTATCGGAACTTCCAGCTTCCAACCTCCCCAGAGTTTCTTTTCGATGAAGAAGCTCGCCGCCAGCGTCGATCTTGGGGCGAGAATCTCACCTTCTACACTGGTTGCGGTTACCTCGCTGGTGCTGTCGGCGGAGCATCTACAGGACTCGTATCCGGCGTCAAATCTTTTGAATCAGGTGATACTATGAAACTCCGGATCAATCGGATCCTGAACTCGTCTGGTCATTCAGGGCGTCTTTGGGGGAATCGGCTCGGCGTGATTGGGTTGCTTTATGCTGGTTTGGAGAGCGGGATTGAGGCTGTGAGGGATACGGACGATGTGTGGAACTGTATTGCCGCAGGACTTGGCACTGGTGCGCTTTATCGTGCAGCAAGAGGGGTGAGATCGGCGGCGGTGGCCGGTGCTATTGGCGGTGTCGTGGTTGGCGTGGCGGTGACGGGTAAGCAGATGTTGAAGCGCCACCGTGACCTACGCAGTCCAAGGGTTACACTACAAAAACCTAACAGCCTTCACAAAAATTTCCCTCTTTCGCTCGCTGCGCTTTGCCCAACACTCGCCTCCAACTCCACGGATCAGATCCGAAGAGTTTGGCAAACCCTAGCTTCCTTTCTTCAATCTCCATCTGTTTCATCTTCCTCTTTCTTCTCTAACATTCCGCAGGTCTGCTTCATTCCTTTCTCTTTCGATTTTGCTTCCTTTTCTACTTATTTCACTGCACGGATATGGTTGAATCCTTGTTTATGCTTAGTTTGGCTTTCTTTTCCTGTGTTTGCTTTGGGAAAAGCCATGGCAGGTTTAGCTCCAGAAGGATCCCAGTTTGATTCTCGCCAATATGATGCTAAAATGAATGAGATTCTTTCGGCAGAAGGCCAGGAATTCTTTACCTCATATGATGAAGTATATGAAAGTTTTGATTCGATGGGGCTGCAAGAAAATCTCCTTAGAGGCATTTATGCCTATGGTTTTGAGAAACCATCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCTGCAAAGGCCTTGATGTGATTCAGCAGGCTCAGTCTGGAACTGGGAAGACTGCAACCTTCTGCTCTGGGATACTTCAGCAACTTGATTATGGTCTAATCCAGTGTCAGGCATTAGTTCTGGCTCCGACTAGGGAGCTGGCTCAACAAATCGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGTGTCAAGGTTCATGCTTGTGTAGGAGGGACAAGCGTCCGTGAGGATCAACGCATTCTTCAAGCTGGTGTTCACGTAGTAGTTGGAACACCTGGTCGTGTGTTTGACATGTTAAGGAGGCAGTCTCTTCGCCCAGATTGTATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGAGGTTTCAAAGATCAGATTTATGACATTTTCCAGCTGTTGCCGTCAAAAATTCAAGTTGGGGTATTCTCCGCCACAATGCCACCAGAAGCTTTGGAGATCACGAGGAAATTCATGAACAAGCCTGTCAGAATCTTGGTAAAACGTGATGAGCTTACTTTGGAGGGTATCAAACAATTTTACGTAAATGTCGATAAGGAAGATTGGAAGCTCGAAACTCTATGTGATCTCTACGAGACTCTGGCTATCACTCAAAGTGTTATTTTTGTTAACACACGTCGCAAGGTCGATTGGCTTACAGACAAGATGAGAAGCCGAGACCATACCGTATCAGCCACCCATGGTGACATGGACCAGAACACTCGAGATATAATTATGCGTGAATTTCGGTCTGGTTCGTCTCGTGTCCTTATCACAACTGACTTGTTAGCTCGTGGTATTGATGTTCAGCAAGTCTCCCTTGTCATAAATTATGATTTGCCAACCCAACCAGAAAATTACCTTCATCGAATTGGGCGAAGTGGGCGTTTTGGAAGAAAGGGTGTTGCCATCAATTTTGTTACAAATGATGATGACAGAATGCTTTTTGATATTCAGAAGTTCTATAATGTGGTCATCGAGGAGCTGCCAGCCAATGTTGCAGATCTCCTATGA | 2127 | 46.45 | MADHSSNRDTDSGFDHGSPQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGENLTFYTGCGYLAGAVGGASTGLVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVIGLLYAGLESGIEAVRDTDDVWNCIAAGLGTGALYRAARGVRSAAVAGAIGGVVVGVAVTGKQMLKRHRDLRSPRVTLQKPNSLHKNFPLSLAALCPTLASNSTDQIRRVWQTLASFLQSPSVSSSSFFSNIPQVCFIPFSFDFASFSTYFTARIWLNPCLCLVWLSFPVFALGKAMAGLAPEGSQFDSRQYDAKMNEILSAEGQEFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTNDDDRMLFDIQKFYNVVIEELPANVADLL | 708 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 957910 | 964774 | - | CrPI670011_09g000710.1 | Cre09g0071 | 506739 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre09g0071 | 708 | Pfam | DEAD/DEAH box helicase | 360 | 522 | IPR011545 | GO:0003676(InterPro)|GO:0005524(InterPro) | |
| Cre09g0071 | 708 | Gene3D | - | 325 | 543 | IPR027417 | - | |
| Cre09g0071 | 708 | SMART | ultradead3 | 354 | 551 | IPR014001 | - | |
| Cre09g0071 | 708 | SMART | helicmild6 | 588 | 669 | IPR001650 | - | |
| Cre09g0071 | 708 | Gene3D | - | 544 | 708 | IPR027417 | - | |
| Cre09g0071 | 708 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Cre09g0071 | 708 | FunFam | Eukaryotic initiation factor 4A-III | 543 | 708 | - | - | |
| Cre09g0071 | 708 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 404 | 689 | IPR027417 | - | |
| Cre09g0071 | 708 | CDD | DEADc_EIF4A | 340 | 537 | - | - | |
| Cre09g0071 | 708 | FunFam | Eukaryotic initiation factor 4A-II | 323 | 542 | - | - | |
| Cre09g0071 | 708 | Pfam | Tim17/Tim22/Tim23/Pmp24 family | 63 | 173 | - | - | |
| Cre09g0071 | 708 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 482 | 490 | IPR000629 | - | |
| Cre09g0071 | 708 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 366 | 536 | IPR014001 | - | |
| Cre09g0071 | 708 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 330 | 694 | - | GO:0003723(PANTHER)|GO:0003724(PANTHER) | |
| Cre09g0071 | 708 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 335 | 363 | IPR014014 | GO:0003724(InterPro) | |
| Cre09g0071 | 708 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 547 | 708 | IPR001650 | - | |
| Cre09g0071 | 708 | Pfam | Helicase conserved C-terminal domain | 561 | 669 | IPR001650 | - | |
| Cre09g0071 | 708 | CDD | SF2_C_DEAD | 548 | 678 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre08g1275 | Cre-Chr8:25889458 | Cre09g0071 | Cre-Chr9:957910 | 2.50E-62 | dispersed | |
| Cre09g0071 | Cre-Chr9:957910 | Cre09g2437 | Cre-Chr9:43748222 | 4.40E-52 | dispersed | |
| Cre03g2059 | Cre-Chr3:37647944 | Cre09g0071 | Cre-Chr9:957910 | 1.70E-54 | transposed | |
| Cre06g1740 | Cre-Chr6:15786554 | Cre09g0071 | Cre-Chr9:957910 | 1.80E-50 | transposed | |
| Cre09g1716 | Cre-Chr9:35340877 | Cre09g0071 | Cre-Chr9:957910 | 8.80E-52 | transposed | |
| Cre10g1343 | Cre-Chr10:27022950 | Cre09g0071 | Cre-Chr9:957910 | 3.60E-141 | transposed | |
| Cre10g2070 | Cre-Chr10:35391264 | Cre09g0071 | Cre-Chr9:957910 | 1.20E-54 | transposed | |
| Cre11g2076 | Cre-Chr11:32541200 | Cre09g0071 | Cre-Chr9:957910 | 5.60E-51 | transposed | |
| Cre07g1748 | Cre-Chr7:32945787 | Cre09g0071 | Cre-Chr9:957910 | 4.40E-233 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre09g0071 | K03257 | - | csv:101221456 | 816.224 |