Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0076 ATGGATGGAGGTGGCGCAGTGCACAATCGATCAGTGGAAGATGTTTTCAGTGATTTTAGGGGACGAAGAAACGGCGTCATCAAAGCCCTCACCGTAGATGTTGAAGAGTTCTATCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGCTTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCTGAAGAAGTACCTCCAGAGCTTCCAGAGCCAGCGTTGGGTATTAATTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCATTGGTTGCTGTCCATAGTGATTCTTGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAAACTGATAGGAGGCGGCTTTTTAATATGATAAATGATTTGCCAACTGTATTTGAAGTAGTCACAGGTATTGCAAAGAAACAAGTTAAGGAAAAGTCATCAAGTGCTAATGGTAGCAAATCCAAGTCAAGCTTAAAAACGAGGGAAGCTGAAATGCAAGGAATGTATGCTAGGCAGCCGCAGGCAAGGGAAGAGGTAGAGACGTTGTATGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTGGGGCATGCGGTGAGAATTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGGGAAGTGTGTTAGAATAACTCCTGCTAAAGCCGAGCACATTAAGCAGTACAAATGCCCATCTTGCAGCAACAAGAGAAGCCGCATTTAA 756 42.86 MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKTDRRRLFNMINDLPTVFEVVTGIAKKQVKEKSSSANGSKSKSSLKTREAEMQGMYARQPQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNKRSRI 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1041870 1044266 - CrPI670011_09g000760.1 Cre09g0076 506744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0076 251 SMART PHD_3 197 245 IPR001965 -
Cre09g0076 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Cre09g0076 251 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cre09g0076 251 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
Cre09g0076 251 MobiDBLite consensus disorder prediction 147 174 - -
Cre09g0076 251 FunFam PHD finger alfin-like protein 190 246 - -
Cre09g0076 251 Pfam PHD-finger 198 244 IPR019787 -
Cre09g0076 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Cre09g0076 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Cre09g0076 251 CDD PHD_AL_plant 197 247 IPR044104 -
Cre09g0076 251 PANTHER CPG BINDING PROTEIN 9 250 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0775 Cre-Chr7:6122920 Cre09g0076 Cre-Chr9:1041870 2.80E-40 dispersed
Cre08g0932 Cre-Chr8:22526059 Cre09g0076 Cre-Chr9:1041870 2.80E-88 dispersed
Cre09g0076 Cre-Chr9:1041870 Cre10g0950 Cre-Chr10:12917239 6.30E-94 dispersed
Cre11g0655 Cre-Chr11:3648964 Cre09g0076 Cre-Chr9:1041870 3.70E-110 wgd
Cre03g1798 Cre-Chr3:34815448 Cre09g0076 Cre-Chr9:1041870 1.70E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54272 PF12165 Alfin 7.50E-68 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0076 K26274 - csv:101222322 501.901