Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0094 ATGGGTTTCAAAAAGCTATTCTCTCTAAAATATTTGATACCCAGTTGTTTAAAGCCAAAGAAGCTGCTCACAGGCCCTTCTTCTGCTGGATTTCAAACCTCAAAAAGAATCTCTCTTAGAAGAATCTTATCATTGTCTGATATGAGTGTTAGATCATCTTTATCAGTTATTAGTGATCTTTCAAACTCTTGTAATGGTTCAAATCTTCAAATTTTCACCTTTAAAGAACTTGAGGAAGTCACTGAAAACTTCACCAAAAGCAATTATTTGGGTGAAGGAGGATTTGGGCCTGTGTTTAAAGGGTTCATTGAAGACAATTTCAAGCCTGGTTTGAAATCACAGCAAGTGGCTGTGAAGATTTTGGATTTGGATGGCTCTCAAGGCCATAGAGAGTGGCTGGCTGAAGTGTTTTTTCTTGGGCAATTGAGACACCCAAATCTTGTTAATTTGATTGGATATTGTCTTGAAGATGAACAGAGGCTTCTTGTATATGAATATATGGAAGGAGGAAACTTGGAGAATCTGTTGTTTAAATGTTGTTATGTTTCAAATTTGACATGGTTACAAAGGATAAAAATTGCATTAGGATCAGCAAAAGGCCTTGCTTTCTTGCACGAAACCGAAAAACCGATCATTTTTCGAGATTTCAAGGCTTCGAACATCTTACTCGACTCGGATTACAATCCGAAACTTTCGGATTTTGGGTTGGCCATAAATGGTCCTGACGAAGATGATACACACGTAACGACTCGAATCATGGGGACAGAAGGTTATGCAGCCCCAGAATACATCATGACAGGTCATTTGTCAACAATGAGTGATGTGTTCAGCTTTGGGGTGCTCCTATTAGAGTTGCTAACCGGTCGACGAGCGATCGACAAGAATCGACCGAGCCGAGAACAGAACTTGGTGGCTTGGGGAAGATATCTTTTGAAAGATCACCACAAACTTGAAAAGATAATTGATCCAAGGCTTGAGGGGCATTACTCAATTGAAGGGGCTAAAAAATTGGCTACAATAGCTTATCAATGCCTTAGCCACCACCCAAAATGTAGGCCCTCAATGAGCACAGTGGTGAAGGATTTGGAGGTTGTTCTTAACATGAAAGAGTTTCTAACTGAGCCATTTGTGTATATTGTCCCAAGTGAAGAGATGAAAGAGGTGGAGAGACTGGAGAACCGTCGCCGGTACGGTGACCGAAAAGGTCGAAGCTATAGGCTTCGGGTGTCGTCATCGAGATTGAGATCTGGTGCTGTTCATTCTGATACAGCCTTTATGGAAAATTTATAG 1290 40.7 MGFKKLFSLKYLIPSCLKPKKLLTGPSSAGFQTSKRISLRRILSLSDMSVRSSLSVISDLSNSCNGSNLQIFTFKELEEVTENFTKSNYLGEGGFGPVFKGFIEDNFKPGLKSQQVAVKILDLDGSQGHREWLAEVFFLGQLRHPNLVNLIGYCLEDEQRLLVYEYMEGGNLENLLFKCCYVSNLTWLQRIKIALGSAKGLAFLHETEKPIIFRDFKASNILLDSDYNPKLSDFGLAINGPDEDDTHVTTRIMGTEGYAAPEYIMTGHLSTMSDVFSFGVLLLELLTGRRAIDKNRPSREQNLVAWGRYLLKDHHKLEKIIDPRLEGHYSIEGAKKLATIAYQCLSHHPKCRPSMSTVVKDLEVVLNMKEFLTEPFVYIVPSEEMKEVERLENRRRYGDRKGRSYRLRVSSSRLRSGAVHSDTAFMENL 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1184326 1186005 + CrPI670011_09g000940.1 Cre09g0094 506762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0094 429 Gene3D Phosphorylase Kinase; domain 1 55 166 - -
Cre09g0094 429 PANTHER OS01G0588500 PROTEIN-RELATED 60 365 IPR050823 -
Cre09g0094 429 Pfam Protein tyrosine and serine/threonine kinase 87 362 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre09g0094 429 ProSiteProfiles Protein kinase domain profile. 84 377 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g0094 429 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 167 374 - -
Cre09g0094 429 FunFam Serine/threonine-protein kinase BIK1 51 166 - -
Cre09g0094 429 CDD STKc_IRAK 90 363 - -
Cre09g0094 429 SUPERFAMILY Protein kinase-like (PK-like) 69 386 IPR011009 -
Cre09g0094 429 Gene3D Transferase(Phosphotransferase) domain 1 167 374 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1748 Cre-Chr5:29255370 Cre09g0094 Cre-Chr9:1184326 9.70E-108 dispersed
Cre09g0094 Cre-Chr9:1184326 Cre10g2391 Cre-Chr10:37940700 2.20E-107 dispersed
Cre11g0640 Cre-Chr11:3552540 Cre09g0094 Cre-Chr9:1184326 2.50E-121 wgd
Cre03g1778 Cre-Chr3:34629078 Cre09g0094 Cre-Chr9:1184326 3.40E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64377 PF07714 PK_Tyr_Ser-Thr 1.50E-45 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0094 - - - 0.0