Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0123 ATGTTCATCCTTCGACTGAGTGTCTTGGAGATTCTAAAGGGCAGTCGTCCAAATTCTTGGGCTCGTGGGTTAGACCGTACGATTGGTTTGTTCAAAAATTCTTTAGGAAAAGTAAAGAAATCGGTTACTTGTTTTAATCAACGTAAGGGCGTAAAGGATTCTCCTCCTTGGTGGACTCGAATGTTGATCTTTAAAGCTACGGACTACTTAGGGTTTTCGATTTTCCTGATTTTTTCCATTCGCTGCTTGATCTTCCTTCCTCCAGTCGTTCCTGCTAGATATACTTGTAGGCTTCTTGCAATCCCCTGTGGTAGTGTTCCTGAAGATAAATGTAAGAAGGATAATCCAGAGGATCAGCAGAGATATCCCTTTCCACAATTAAATTCTTCTGGGCGTTTGGAGGTCCAGGTTTTGTCCAATCCTAGTAAAGATCAGTTTTGTAGGGTTCTTGAATCATATAAACCAAACATTGTTTACTTACAAGGGGAACAACTTGAGAATGATGAAGTTGGTTCTTTAGTATGGGGAGATGTTGATTTGTCCACCGTAGAAGCGATAAGTGGGCTCTTTAGTTATCCGTTGTCCACCACTGTATATTTGGAAATAGCAAAGGGAGATGAAGTAGCTGATGCACTTCACTCCAAGGGTATTCCTTATGTCATATACTGGAGAAGCACATTTTCTTGTTATGAAGCATGCCATTTCCGTAATGCATTCCTTTCGGTTCTTCAGAGTTCATCTGCTCACACATGGGACGCATTTCAACTTGCAAATGCTTCATTTAGGATGTATTGCTTGGGAAACAACCTTGTTTTTCCTAACAGTAGTCATGAAGAAGTTAGTGAAGATCGGGGTCCACATCTTCTAGGGGAACGCTTGAAAATAAATATCGAACCCCTTGAGAAAGAGGCAGCTGACGATGAAGAAAGTTCATCGGAAATTCCTTCTGTGAGCATACTTGATAATGATGTTGAAATGAGATTTCTTGTATGTGGAGAACCAGGCTCATTGGATGCTTATGTATTAGGAGCTCTGGAGGATGGTCTTAACGCCCTCTTGGACATTGAAATTCGGGGGAGCAAACTTCACGGCAAGTTCAGTGCCCCTCCTCCACCTCTTCAGGCAGGAACACTCTCTAATGGTGTTGTGACCATGCGCTGTGATATATCGACATGCAGTTTTGCCCACATCTCACTATTGGTGTCAGGTAGTGCACAAGCTTGTTTTGATGATCAGCTATTTGAAAATTATATAAAGAATGAGATTGTAGACAGAGGCGAACTAGTGCAGACACTAATCGATGGTGAAGGAACCAAACGCTTATCTGAGCCACGGAAATCTGTTTCAATTGCTTGTGGGGCAACAGTTTTTGAAGTTAGCATGAAGGTCCCTTCATGGGCATCTCAGATTTTGAGGCAGTTAGCCCCTGACGTTTCTTATCGAAGTTTAGTGGGACTGGGCATTGCCAGCATCCAGGGTTTTTCTGTTGCTTCTTTTGAGAAGGATGATGCTGAACGCCTCCTTTTCTTCTGTTCAAGGAAGGAAAAAGATTTATTTCTGAGCAATTTAACCGATAGCACACTCCCAAGCTGGTTGAAACCACCTGCTCCTAGAAAGAGATCGAAATATATGAAAGATACAAGCCTTGGTTCTCATGATGTTATTGAACATCTGAAGGTTTCGTCTGGTAGGAGAATAGATAGTGTGAACATGGAAATAGGATCAAGGAATGGTTTTAGCACTCCCATGTTCCCATTCCCAAGAAGGAGAGGCATGAAAATTGCTGCAATGAGGCCCATTCCTCATGTTAATCGCCATAAAATGATCTCTTTTCATGGAATAGAGACAGGTGGGCACAATGGAAGCCTGGTTAAAGCTAGTGTTCCTTCTAGTAATCCCACAAAGCATGTGACTGTAGGTTCAGCTTCAGTTTTTCAACAAAAAATGTTTCCAAGTGCATCTCAATATAAACAAATCATTCCCATGAATCCATTACCTTTGAAGAAGCACGGTTGTGGCAGAAGCCCTATACAGGCTTGCTTTGAGGATGAATTTTTGAAGGATTTGCTGCAGTTTTTAGCTCTTCGAGGTCACAACCGACTTATTCCTCCAGGTGGGCTTGCCGAGTTTCCAGATGCTATACTCAATGGAAAGCGTCTTGACCTTTACAACCTGTACAAGGAGGTGGTTTCAAGAGGTGGCTTCCGTGTTGGAAATGGCATTAACTGGAAAGGACAGATCTTTTCAAAGATGCGCAATTACACCATGACCAATAGAATGACTGGTGTCGGAAACACGCTTAAAAGACATTACGAGACTTATCTTCTAGAGTATGAATTGGCACACGAAGATGTAGATGGTGAATGTTGCCTGTTGTGTCACAGTAGCGCAGCCGGGGACTGGGTGAACTGTGGCATTTGTGGGGAGTGGGCACACTTCGGCTGTGACAGAAGGCAGGGTCTCGGCGCATTTAAGGATTATGCAAAAACTGATGGATTAGAATACATATGTCCACACTGTAGTGTTGCTAATTATAAGAAGAAGAAAGTGGCAAATGGGTTGTCTCCAGGCTTCTCCTCAAGACCAATATGA 2592 42.67 MFILRLSVLEILKGSRPNSWARGLDRTIGLFKNSLGKVKKSVTCFNQRKGVKDSPPWWTRMLIFKATDYLGFSIFLIFSIRCLIFLPPVVPARYTCRLLAIPCGSVPEDKCKKDNPEDQQRYPFPQLNSSGRLEVQVLSNPSKDQFCRVLESYKPNIVYLQGEQLENDEVGSLVWGDVDLSTVEAISGLFSYPLSTTVYLEIAKGDEVADALHSKGIPYVIYWRSTFSCYEACHFRNAFLSVLQSSSAHTWDAFQLANASFRMYCLGNNLVFPNSSHEEVSEDRGPHLLGERLKINIEPLEKEAADDEESSSEIPSVSILDNDVEMRFLVCGEPGSLDAYVLGALEDGLNALLDIEIRGSKLHGKFSAPPPPLQAGTLSNGVVTMRCDISTCSFAHISLLVSGSAQACFDDQLFENYIKNEIVDRGELVQTLIDGEGTKRLSEPRKSVSIACGATVFEVSMKVPSWASQILRQLAPDVSYRSLVGLGIASIQGFSVASFEKDDAERLLFFCSRKEKDLFLSNLTDSTLPSWLKPPAPRKRSKYMKDTSLGSHDVIEHLKVSSGRRIDSVNMEIGSRNGFSTPMFPFPRRRGMKIAAMRPIPHVNRHKMISFHGIETGGHNGSLVKASVPSSNPTKHVTVGSASVFQQKMFPSASQYKQIIPMNPLPLKKHGCGRSPIQACFEDEFLKDLLQFLALRGHNRLIPPGGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANYKKKKVANGLSPGFSSRPI 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1510342 1516311 - CrPI670011_09g001230.1 Cre09g0123 506791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0123 863 SUPERFAMILY FYVE/PHD zinc finger 775 843 IPR011011 -
Cre09g0123 863 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 92 855 IPR042293 -
Cre09g0123 863 SMART ARID_2 676 779 - -
Cre09g0123 863 SMART bright_3 680 784 IPR001606 GO:0003677(InterPro)
Cre09g0123 863 Pfam ARID/BRIGHT DNA binding domain 683 779 IPR001606 GO:0003677(InterPro)
Cre09g0123 863 Gene3D - 676 779 IPR036431 GO:0003677(InterPro)
Cre09g0123 863 ProSiteProfiles ARID domain profile. 679 783 IPR001606 GO:0003677(InterPro)
Cre09g0123 863 CDD ARID 682 779 - -
Cre09g0123 863 CDD PHD_ARID4_like 789 840 - -
Cre09g0123 863 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 780 849 IPR013083 -
Cre09g0123 863 SUPERFAMILY ARID-like 682 794 IPR036431 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1793 Cre-Chr7:33353488 Cre09g0123 Cre-Chr9:1510342 2.20E-302 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54278 PF01388 ARID 3.40E-15 CL0123 Cre TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0123 - - - 0.0