Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0151 ATGGACAGTATTCATGCGAGCGACGGACGGATGCATATTAGCCATGCACAGCATTCGATGCACACGCAATCGGTGCAAGACCAGGAACATCATGAGTTGCATTATATGAGTAATGGGAATGGACTAGCTGATGAACATGAAAATGAAGGTCATGGTATTATGGTTGTGGAAAGGGAAGTTCAATCGGACCATGGCGATCTTGCAGAGAATCGTGGTGTAATGGTAGATCGAGGAGGCGATAACTGCGACCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCCGAAAAGGTTCAAGCCGTGTTATTGTTATTGGGAGGTCGTGAAGTACCTTTGCGTGTTCCGTCAATCCCAATAACTAATCAACAAAATGATAGGCATCTCACTGATGAAGCGTTTAACCAGGCACTTGCCAATATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAGCGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATCCATGAAGATTCATCATTGGCCGTAGCGAGTTGGGAACCAAATGAGAGTTGGAGTAGTGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATTAGCGAGAAGTCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGTGGACTCATGTGGGCAAACAAGGGAACTCTCCGGGACCTCTCTAAAGCTCCAAATCAGGGTGGACAAACTGCAACCTTCAATAGAAATGAGAATGCTGTGCAGAATGGAGATTCTGAGTCCAACCCAAAAGAGAAACCCTTGTATCTTCTAAGCTGGCCAATGCATCTTGGGATCAAGGGCACCGTGGTATCCAATGGCTGA 975 45.64 MDSIHASDGRMHISHAQHSMHTQSVQDQEHHELHYMSNGNGLADEHENEGHGIMVVEREVQSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSLAVASWEPNESWSSDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQGGQTATFNRNENAVQNGDSESNPKEKPLYLLSWPMHLGIKGTVVSNG 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1749108 1754663 + CrPI670011_09g001510.1 Cre09g0151 506819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0151 324 PANTHER GATA TRANSCRIPTION FACTOR 28 29 292 IPR045280 GO:0006355(InterPro)
Cre09g0151 324 MobiDBLite consensus disorder prediction 274 299 - -
Cre09g0151 324 MobiDBLite consensus disorder prediction 194 224 - -
Cre09g0151 324 SMART GATA_3 225 278 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre09g0151 324 Gene3D - 221 289 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cre09g0151 324 MobiDBLite consensus disorder prediction 274 303 - -
Cre09g0151 324 Pfam tify domain 84 112 IPR010399 -
Cre09g0151 324 Pfam GATA zinc finger 231 267 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre09g0151 324 CDD ZnF_GATA 231 286 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre09g0151 324 ProSiteProfiles GATA-type zinc finger domain profile. 225 286 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre09g0151 324 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Cre09g0151 324 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515(InterPro)
Cre09g0151 324 Pfam CCT motif 155 197 IPR010402 GO:0005515(InterPro)
Cre09g0151 324 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre09g0151 324 SMART tify_2 78 113 IPR010399 -
Cre09g0151 324 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 289 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1099 Cre-Chr8:24158058 Cre09g0151 Cre-Chr9:1749108 1.80E-54 dispersed
Cre08g1100 Cre-Chr8:24167984 Cre09g0151 Cre-Chr9:1749108 3.30E-51 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54279 PF06203 CCT 9.60E-15 CL0281 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0151 - - - 0.0