Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0154 ATGCCGTCCGTCTATGGAGCTCGTGTGACCACTTTTGAAGACTCTGAGAAGGAAAGCGAGTATGGATATGTCCGGAAGGTATCTGGACCAGTCGTTGTGGCAGATGGCATGGGAGGTGCAGCCATGTATGAATTGGTTCGTGTTGGTCATGATAATCTGATTGGTGAAATCATTAGGTTAGAAGGAGATTCTGCCACTATTCAGGTTTATGAGGAAACTGCTGGTTTGATGGTGAATGACCCTGTCTTACGTACTCATAAACCTTTGTCAGTGGAGTTGGGACCTGGAATACTGGGAAATATATTTGATGGCATTCAGAGGCCATTGAAAACAATTGCAAAGAGATCAGGGGATGTCTATATTCCTCGTGGTGTCGCTGTCCCGGCACTGGACAAAGACATACTTTGGGATTTTCAACCCAAAAAACTAGGTGAGGGCGACTTATTGACGGGTGGAGACTTATATGCAACTGTCTTCGAGAATAGTCTAATGGAGCACCACATTGCACTTCCTCCTGATGCTATGGGGAAAATTACCTATATTGCAGCGCCTGGCCAATATTCATTGAAGGATACTGTTTTAGAGCTCGAGTTTCAAGGAGTTAAAAAGCAATTTACCATGCTGCAGACTTGGCCTGTGCGTACTCCTAGACCAGTTGCATCGAAGCTTGCAGCTGATACCCCTCTTTTGACCGGGCAGCGTGTTCTTGATGCACTCTTTCCTTCCGTTCTTGGTGGAACATGTGCCATTCCTGGAGCATTTGGTTGTGGAAAAACAGTCATTAGTCAAGCTCTCTCTAAATATTCAAATTCTGATACTGTGGTGTATGTTGGTTGTGGAGAGAGAGGAAATGAAATGGCTGAAGTTCTTATGGATTTTCCTCAATTGACAATGACATTGCCTGATGGGCGTGAAGAATCTGTCATGAAGCGTACCACTCTTGTGGCTAACACTTCTAATATGCCTGTGGCTGCTCGTGAAGCTTCAATTTATACTGGAATTACTTTGGCTGAATACTTCAGAGATATGGGATACAATGTAAGCATGATGGCAGATTCAACATCTCGATGGGCAGAAGCACTGCGTGAAATATCTGGACGACTGGCAGAAATGCCAGCAGATAGTGGATATCCTGCCTACCTAGCGGCACGTTTAGCCTCTTTCTATGAGCGTGCTGGTAAAGTGAAGTGTCTTGGTGGGCCAGAACGAACTGGCAGTGTTACCATTGTCGGTGCAGTTTCTCCCCCTGGAGGAGATTTCTCTGATCCAGTGACGTCTGCCACCCTCAGTATTGTCCAGGTTTTCTGGGGTCTAGATAAGAAGCTTGCCCAGAGGAAGCACTTCCCTTCCGTGAATTGGCTAATTTCATACTCAAAATACTCTTCTGCGTTGGAATCTTTCTATGAGAAGTTTGATCCAGATTTTATTAACATCAGAACGAAGGCTCGTGAAGTCCTTCAGAGGGAAGATGACCTCAATGAAATTGTCCAACTTGTAGGAAAGGATGCCTTGGCTGAAGGAGATAAGATTACCTTAGAGACTGCAAAGCTTTTGAGGGAGGACTATCTTGCTCAGAATGCATTTACTCCGTATGATAAATTCTGCCCCTTCTACAAGTCGGTCTGGATGATGCGTAATATCATTCATTTCTACAATTTGGCTAATCAGGCAGTAGAGAGGGGAGCGGGTATGGATGGCCAAAAGATAACATACAGTTTGATTAAGCATCGGTTGGGAGATCTGTTCTATCGCCTGGTGTCTCAGAAGTTTGAGGATCCAGCTGAAGGAGAAGCAGCTCTCACTGAAAAATTTAAGAAGCTACATGAAGATCTGACAAATGGTTTCCGTGCTCTCGAGGACGAAACCCGGTAG 1872 44.98 MPSVYGARVTTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVAVPALDKDILWDFQPKKLGEGDLLTGGDLYATVFENSLMEHHIALPPDAMGKITYIAAPGQYSLKDTVLELEFQGVKKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSSALESFYEKFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQKITYSLIKHRLGDLFYRLVSQKFEDPAEGEAALTEKFKKLHEDLTNGFRALEDETR 623
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 1772695 1778468 - CrPI670011_09g001540.1 Cre09g0154 506822

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0154 623 FunFam V-type proton ATPase catalytic subunit A 134 205 - -
Cre09g0154 623 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034(InterPro)|GO:1902600(InterPro)
Cre09g0154 623 Gene3D - 134 205 - -
Cre09g0154 623 FunFam V-type proton ATPase catalytic subunit A 20 89 - -
Cre09g0154 623 Gene3D - 20 89 IPR023366 -
Cre09g0154 623 Pfam C-terminal domain of V and A type ATP synthase 466 561 - -
Cre09g0154 623 NCBIfam V-type ATPase subunit A 20 611 IPR005725 GO:0016887(InterPro)|GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cre09g0154 623 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 11 620 IPR022878 GO:0000325(PANTHER)|GO:0046034(InterPro)|GO:0046961(InterPro)|GO:0046961(PANTHER)|GO:1902600(PANTHER)
Cre09g0154 623 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Cre09g0154 623 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 89 IPR036121 GO:0046034(InterPro)|GO:1902600(InterPro)
Cre09g0154 623 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 471 553 - -
Cre09g0154 623 Gene3D - 459 615 IPR024034 -
Cre09g0154 623 Hamap V-type ATP synthase alpha chain [atpA]. 19 622 IPR022878 GO:0046034(InterPro)|GO:0046961(InterPro)
Cre09g0154 623 CDD V_A-ATPase_A 88 460 - -
Cre09g0154 623 FunFam V-type proton ATPase catalytic subunit A 459 612 - -
Cre09g0154 623 CDD ATP-synt_V_A-type_alpha_C 475 581 - -
Cre09g0154 623 ProSitePatterns ATP synthase alpha and beta subunits signature. 449 458 IPR020003 GO:0005524(InterPro)
Cre09g0154 623 FunFam V-type proton ATPase catalytic subunit A 192 457 - -
Cre09g0154 623 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 232 458 IPR000194 GO:0005524(InterPro)
Cre09g0154 623 Pfam ATPsynthase alpha/beta subunit N-term extension 102 223 IPR031686 -
Cre09g0154 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 463 IPR027417 -
Cre09g0154 623 Gene3D - 91 457 IPR027417 -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0154 K02145 - - csv:101216234 1211.44
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g1606 . 1 831 Primary Pumps ATPases(2) AT1G10130 84.1 0.0e+00 1374.4
Cre02g2386 . 1 840 Primary Pumps ATPases(2) AT2G28520 79.0 0.0e+00 1328.9
Cre02g0838 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.3e-292 1002.7
Cre08g1408 . 1 774 Primary Pumps ATPases(2) AT2G28520 61.2 1.1e-285 979.5
Cre02g0838 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1233.0
Cre08g1408 . 1 779 Primary Pumps ATPases(2) AT2G21410 71.3 0.0e+00 1147.1
Cre02g2386 . 9 844 Primary Pumps ATPases(2) AT2G21410 60.7 1.8e-294 1008.8
Cre02g0838 . 1 818 Primary Pumps ATPases(2) AT4G39080 76.4 0.0e+00 1235.3
Cre08g1408 . 1 779 Primary Pumps ATPases(2) AT4G39080 72.1 0.0e+00 1151.3
Cre02g2386 . 9 844 Primary Pumps ATPases(2) AT4G39080 61.6 2.0e-293 1005.4
Cre08g1397 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cre08g1398 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cre11g1987 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cre08g1397 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.5e-66 249.6
Cre08g1398 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.5e-66 249.6
Cre11g1987 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 3.4e-66 248.4
Cre08g1397 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre08g1398 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre11g1987 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre11g1987 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 5.9e-53 203.8
Cre08g1397 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.3e-52 202.6
Cre08g1398 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.3e-52 202.6
Cre05g1876 . 4 180 Primary Pumps ATPases(2) AT2G25610 82.5 2.0e-70 262.7
Cre08g1242 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.4e-70 261.9
Cre08g1397 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.3e-60 227.6
Cre08g1398 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.3e-60 227.6
Cre11g1987 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.3e-60 227.6
Cre05g1876 . 11 180 Primary Pumps ATPases(2) AT4G32530 77.5 5.2e-73 271.2
Cre08g1242 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.7e-71 266.2
Cre03g0492 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.6 0.0e+00 1671.4
Cre03g0492 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1671.0
Cre08g1606 . 1 831 Primary Pumps ATPases(2) AT1G10130 84.1 0.0e+00 1374.4
Cre03g0492 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.7 0.0e+00 1319.7
Cre03g2001 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 4.1e-57 217.6
Cre02g0748 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 3.7e-268 920.6
Cre10g2148 . 33 140 Primary Pumps ATPases(2) AT3G01390 80.6 4.1e-37 151.0
Cre09g1721 . 237 612 Primary Pumps ATPases(2) AT1G12840 83.5 1.2e-181 632.9
Cre01g0259 . 1010 1227 Primary Pumps ATPases(2) AT3G58730 86.7 2.0e-103 372.5
Cre10g1759 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.4 2.2e-206 715.3
Cre08g1397 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre08g1398 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre11g1987 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre02g0748 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 2.4e-270 927.9
Cre05g1625 . 1 184 Primary Pumps ATPases(2) AT1G64200 73.8 5.6e-66 247.7
Cre02g0748 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 7.8e-266 912.9
Cre02g2386 . 1 840 Primary Pumps ATPases(2) AT2G28520 79.0 0.0e+00 1328.9
Cre02g0838 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.3e-292 1002.7
Cre08g1408 . 1 774 Primary Pumps ATPases(2) AT2G28520 61.2 1.1e-285 979.5
Cre10g1627 . 63 404 Primary Pumps ATPases(2) AT3G28715 92.7 3.0e-187 651.4
Cre05g1625 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.4 7.9e-91 330.5
Cre09g0154 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.3 0.0e+00 1171.4
Cre02g0748 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 3.7e-268 920.6
Cre02g0748 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 2.4e-270 927.9
Cre02g0748 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 7.8e-266 912.9
Cre09g1721 . 237 612 Primary Pumps ATPases(2) AT1G12840 83.5 1.2e-181 632.9
Cre01g0259 . 1010 1227 Primary Pumps ATPases(2) AT3G58730 86.7 2.0e-103 372.5
Cre05g1625 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.4 7.9e-91 330.5
Cre05g1625 . 1 223 Primary Pumps ATPases(2) AT3G08560 69.0 3.3e-76 282.0
Cre05g1625 . 1 184 Primary Pumps ATPases(2) AT1G64200 73.8 5.6e-66 247.7
Cre03g2001 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 4.1e-57 217.6
Cre10g2148 . 33 140 Primary Pumps ATPases(2) AT3G01390 80.6 4.1e-37 151.0
Cre10g1759 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.4 2.2e-206 715.3
Cre02g2386 . 1 840 Primary Pumps ATPases(2) AT2G28520 79.0 0.0e+00 1328.9
Cre02g0838 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.3e-292 1002.7
Cre08g1408 . 1 774 Primary Pumps ATPases(2) AT2G28520 61.2 1.1e-285 979.5
Cre02g0838 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1233.0
Cre08g1408 . 1 779 Primary Pumps ATPases(2) AT2G21410 71.3 0.0e+00 1147.1
Cre02g2386 . 9 844 Primary Pumps ATPases(2) AT2G21410 60.7 1.8e-294 1008.8
Cre02g0838 . 1 818 Primary Pumps ATPases(2) AT4G39080 76.4 0.0e+00 1235.3
Cre08g1408 . 1 779 Primary Pumps ATPases(2) AT4G39080 72.1 0.0e+00 1151.3
Cre02g2386 . 9 844 Primary Pumps ATPases(2) AT4G39080 61.6 2.0e-293 1005.4
Cre08g1397 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cre08g1398 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cre11g1987 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cre11g1987 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 5.9e-53 203.8
Cre08g1397 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.3e-52 202.6
Cre08g1398 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.3e-52 202.6
Cre08g1397 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.3e-60 227.6
Cre08g1398 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.3e-60 227.6
Cre11g1987 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.3e-60 227.6
Cre08g1397 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.5e-66 249.6
Cre08g1398 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.5e-66 249.6
Cre11g1987 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 3.4e-66 248.4
Cre08g1397 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre08g1398 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre11g1987 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre05g1876 . 11 180 Primary Pumps ATPases(2) AT4G32530 77.5 5.2e-73 271.2
Cre08g1242 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.7e-71 266.2
Cre05g1876 . 4 180 Primary Pumps ATPases(2) AT2G25610 82.5 2.0e-70 262.7
Cre08g1242 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.4e-70 261.9
Cre10g1627 . 63 404 Primary Pumps ATPases(2) AT3G28710 95.0 2.6e-194 674.9
Cre10g1627 . 63 404 Primary Pumps ATPases(2) AT3G28715 92.7 3.0e-187 651.4
Cre03g0492 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.6 0.0e+00 1671.4
Cre03g0492 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.7 0.0e+00 1319.7
Cre08g1606 . 1 831 Primary Pumps ATPases(2) AT1G10130 84.1 0.0e+00 1374.4
Cre03g0492 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1671.0
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006487 2 1 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 0 1 1 1 1 1 1 1 2 37