Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0164 ATGTGGAAGCTTAAGGTGGCAGATGGCGGAAATGATCCTTACATCTATTCTATGAACAACTTTGTAGGAAGGCAAATATGGGAATTCGACCCCAACGCAGGGACCCCTGAAGAGCGGGCCGAAGTCGAACGCGTTCGCGATGAGTTCACCAAAAATCGTCTCAAAGGTTTTCCAAGTGCTGACTTGCTTTGGCGCCTCCAGCTTCTGAGAGAGAAGAATTTCAAACAAAGCATCCCACCGGTGAAGGTTGAAGAAGGAGAAGAAATGAGTTACGAAATGGCATGGGATGCAATGAGAAGAGGGGCGCATTTCTTAGCGGCCATACAAGCAAGCGATGGGCATTGGCCCAGCGAAACATCGGGCCCACTATTTTACTTGTGTCCCCTCCTTATTTGCATGTACATAATGGGCTTTATGGATACCGCATTCACTCCCGAGCACAAGAAAGAAATGATGCGTTACGTTTACAACCATCAGAATGAAGATGGTGGATGGGGGTTACACGTTGGTGGTCACAGTAACATGTTCTGCACTACCTTCAATTATATCTCTTTACGTTTACTTGGTGAAGGACCTGATGTTGAGCTAGTTTCCAGAGCCAGAGAATGGATTCGTGATCACGGCGGTGTCACATCCATACTTTCTTGGGGAAAGACGTGGCTCTCGATATTAAACGTGTTCGACTGGTCTGCAAGCAACCCCATGCCTCCTGAATATTGGATGTTTCCCACTTGGGTTCCCATTCATCCATCAAACATGATGTGTTACACTCGGATCACCTACATGCCCATGTCTTACTTATACGGAAAAAGGTTCCAAGCACCTCTAACGCCTCTTGTTTTACAATTAAGAGATGAACTTCACACTCAACCCTACGACCAAATTAATTGGAGAAAAGTTCGTCACATGTGTGCTACGGAAGACCTCTACTTTCCACATCCCATTGTCCAAGACTTGCTTTGGGACACTCTTTACTTGCTAAGTGAACCACTCATGACCCGGTGGCCTTTTAACAAATTGATTCGCCAAAAAGCCCTCAATGAGACTATGAGGCATATTCATTATGAGGATGAAAATAGTCGCTATATCACTATTGGTTGCGTCGAAAAGCCATTATGCATGCTAGCTTGTTGGGTTGAAGATCCTAATAGTGAGTATGTGAAGAAGCATTTTGCGAGAATTCCTGATTATTTATGGATGGCGGAAGATGGCATGAAAATGCAAAGTTTTGGTAGCCAATCATGGGATGCCGCTTTGGCAATGCAAGCGCTGCTTTCTTGTAATATCCCACATGAAATTGGGCCTGCTCTCAACACTGGCCATCAATTCATCAAGAACTCCCAGGTTAGAAACAATCCTCCTGGTGACTACAAGAGTATGTTCCGCTACATGTCTAAAGGATCTTGGACCTTCTCAGACTGTGATCATGGATGGCAAGTTTCTGATTGCACTGCCGAGAATTTGAAGTGTTGTCTACTGCTGTCGTTGCTACCACCTGAAATGGTTGGTGAGAAGATGGAACCTGAACGTTTTTACGATGCTGTTAATGTCATTCTGAACATGCAAAGCAAAAATGGGGGTTTACCAGCCTGGGAGCCAGCGTCAAGTTACTACTGGATGGAGTGGCTGAATCCAGTGGAATTTCTCGAAGATCTAATCATCGAGCACCAGCATGTGGAGTGCACCTCATCTGCGTTGCAAGCAATACTCTTATTTAGGAAACAATACCCAGGACATAGAAGGAAAGAGATCAACAATTTTATCAACAAGGCCGTTCAATTTCTTCAAGATATACAATTGCCTGATGGATCTTGGTATGGGAATTGGGGAATTTGCTATACTTATGGAACGTGGTTCGCACTCAAGGCATTGTCAATGGCGGGGAAGACCTATGAAAATTGTGAGGCGCTTCGGAAAGGAGCTAATTTTCTAATCAAGATACAAAATCCAGAAGGAGGGTTTGGAGAGAGCTACTTGTCATGTCCTTACAAGAGATATATACCGCTGGATGGGAAAAGATCAAATTTGGTGCAAACGGCATGGGGTATGATGGGTTTGATAAGTGCTGGACAGGCAGATGTAGACCCCACTCCTATTCATCGTGCTGCCAAGTTGTTGATCAATTCTCAAACAGAAGATGGTGATTTTCCACAAGAGGAAATTACTGGAGAATTCTTCAAAAATTGTACTTTACATTTTGCAGCATTTAGAGAAGTATTTCCTGTGATGGCACTGGGAGAATATTGTAATAAGGACCCCGCTCGATGCTCATTCTCATCGTTGACCAGACCCCCGAGAGTGGCACAGTGGTTTGGAATTGGATCAGCCCAAACGCTCTCTATACGTTCCAATTACAGTAGTTTGTTCGAGTTTCACAAGGCCAATCACCCCTTGAAGAAAGCGCAACGAGTAGAAGAGGAAGAAGAAGGACGAAAACTAGAGCCCCAACCCTCTCTCTCAACTTCTCAGAGTTGCAGTAGTCCAAGGTGCATCATTAGTCCATCAGCATTTTTCCCAACTCCATGCTGGAGAACCTTAAATGCTGTTCAACTTAACCCGTCTCATCTCATTATGCACCGGCTTTTGTTTCGGGATTCAATTCTCGTCTCAAAGTTATCGGCTTTACGAGTCAGACCAGGCTTTAGAATTACGTGTTCTATAAACCGCTTTTCCATCATTTTCTGCCTTATTCCAGTTTCCGCGAACTCTGTTTTGTTTTTGGTTTTTTCTTCCTTTGCTCGGGAAATTTCTATTCGTCCATTCCATCCACTTGACCGCCCCCATATTTTCATATTTCGTTTTCATTTGTATCAGTCAGGAATTTCCAAAATTCAGCGACCAGGGTCGGGGGGCGATTTGCCCCAGGGTGGCGAGTACAACCCTTATCCTATTGCGCGGAGGGTAAATTCCTCCCATACCGTGCTCATGGATGATGACATTGAAAATGCTAGCTTGGGGGTGTACCAAGACAGGCAAAGGACTTTCCCTGATATGCGTAGTAAAGTCAACACCCCATTGATATTTCGAATTTTGATGGGGATAAATATTCGTGTTCTCTTAGTACTTCTTCTCTTTGCATTTGGAATAATATTCTACATTGGAGCAAGCACTTCCCCAATTATTGTGTTTGTCTTCTCAATTTGCATCGTCAGCTTCTGCTTTTCGATATATCTCACCAAATGGGTGCTCTCGAAAGATGAAGGGCCACAGGAGATGGCTCAGATTTCAGAGGCAATACGTGATGGGGCAGAAGGTTTCTTTAGGACTCAGTATAGTACCATCTCTAAAATGGCTATGTTACTTGCAGTAGTGATTCTTTGCATATACTTGTTTCGTAGTACTACTCCTCAACAAGAATCTTCCGGAATAGGGAGGTCAACAACTGCTTATATTACTGTTGCAGCATTTCTGTTAGGAGCCTTGTGTTCAGGTATTGCAGGGTATGTTGGAATGTGGGTTTCAGTTCGTGCAAATGTCAGGGTCTCTAGTGCTGCCAGACGGTCTGCAAGGGAGGCATTGCAGATTGCTGTCCGGGCTGGTGGTTTTTCTGCCATAGTTGTTGTTGGCATGGCTGTTATTGGTATAGCCATCCTGTATGCTGCATTTCATGTTTGGTTGGATGTGGGTTCGCCAGGTTCAACCAAGGTTACTGACTTGCCTCTTCTCCTTGTGGGTTATGGTTTTGGAGCTTCTTTTGTTGCCCTATTTGCTCAGTTGGGTGGTGGTATCTATACCAAAGCTGCTGATGTTGGGGCAGACCTTGTCGGAAAAGTTGAGCAGGGAATACCAGAAGATGACCCAAGAAATCCTGCTGTTATTGCAGATCTGGTTGGGGACAATGTGGGTGATTGTGCCGCTCGAGGTGCAGATCTCTTTGAAAGCATAGCTGCTGAAATTATTAGTGCCATGATACTTGGGGGAACAATGGCTGAACGTTGTAAAATTGAAGATCCATCTGGTTTCATTTTATTTCCGCTGGTAGTACACTCCTTTGATCTGGTGATTTCATCAATTGGCATTCTCTCTATCAGGAGAGGTACTCGTGAATCTGGTGTTAAGGGTCCCATAGAGGATCCAATGACTATTCTGCAGAGAGGATACTCTGTCACTATCGTTCTAGCTGTTCTAACATTTGGCGTGTCTACCCGGTGGTTGCTTCATACTGAACAAGCACCTTCTGCATGGTTCAACTTTGCCTTGTGTGGCTTGGTTGGTATTATAACGGCTTACATTTTTGTCTGGATCACCAAATACTACACTGACTACAAGCATGAGCCTGTGCGTTCATTAGCACTTTCTAGCTCCACAGGCCATGGGACAAACATAATTGCTGGAGTCAGTTTGGGCCTAGAATCAACAGCACTTCCTGTTCTTGTTATTAGTGTTTCTATTGTTTCAGCTTTCTGGTTGGGTCGCACATCAGGACTCGTGGACGAAGCTGGAAATCCAACAGGTGGACTATTTGGTACTGCTGTAGCAACAATGGGAATGCTCAGCACTGCTGCCTATGTTCTCACAATGGATATGTTTGGGCCAATAGCTGATAATGCTGGTGGAATTGTTGAGATGAGTCAGCAGCCAGAAAGCGTTCGGGAGATTACTGATCTTCTTGATGCAGTAGGTAACACAACTAAAGCGACCACAAAAGGTTTTGCCATTGGCTCTGCAGCACTGGCATCCTTCTTACTTTTCAGTGCTTATATGGATGAGGTATCTGCATTTGCTCATGAACCTTTTAAACAGGTAGATATTGCAATTCCAGAAGTTTTTGTTGGTGGTTTGTTGGGTTCCATGCTTATTTTTCTCTTTAGTGCTTGGGCCTGCTCTGCTGTTGGCCGAACAGCCCAAGAGGTTGTAAAGGAAGTAAGAAGACAGTTCATTGAGAGGCCTGGTATTATGGATTATACCGAGAAACCAGAATATGGACGTTGCGTTGCTATTGTAGCATCAGCATCTTTAAGGGAGATGATTAAACCTGGTGCTTTGGCTATCATTTCTCCTATGGCAGTTGGCTTCCTGTTTAGAATATTGGGACACTACACTGGGCAGCCGCTTTTAGGGGCCAAGGTCGTTGCTGCGATGCTGATGTTTGCCACAGTCTCCGGTATTCTCATGGCACTTTTTCTGAACACAGCAGGGGGTGCCTGGGATAATGCCAAGAAGTATATAGAGACTGGGGTTCTTGGAGGTAAAGGTAGCGATTGTCATAAAGCTGCCGTAACTGGGGACACTGTAGGTGACCCATTCAAGGACACAGCAGGGCCTTCTCTTCACGTTCTCATTAAAATGCTTGCAACCATAACGCTGATATATGACATGGAATCTGAAGAACACCTTGTTGTTGAAAACCGAATTCTTCCTCAGCTTCCCGCAGTAATATTTGGAATGCTTGATGGTCGGCGTACAACGTGGCAGAGAATGGCAACGGTGGCGTCGAAAGCTGAAGCAGCAGAGCTCAGTGGCTGTGGCTAG 5472 44.81 MWKLKVADGGNDPYIYSMNNFVGRQIWEFDPNAGTPEERAEVERVRDEFTKNRLKGFPSADLLWRLQLLREKNFKQSIPPVKVEEGEEMSYEMAWDAMRRGAHFLAAIQASDGHWPSETSGPLFYLCPLLICMYIMGFMDTAFTPEHKKEMMRYVYNHQNEDGGWGLHVGGHSNMFCTTFNYISLRLLGEGPDVELVSRAREWIRDHGGVTSILSWGKTWLSILNVFDWSASNPMPPEYWMFPTWVPIHPSNMMCYTRITYMPMSYLYGKRFQAPLTPLVLQLRDELHTQPYDQINWRKVRHMCATEDLYFPHPIVQDLLWDTLYLLSEPLMTRWPFNKLIRQKALNETMRHIHYEDENSRYITIGCVEKPLCMLACWVEDPNSEYVKKHFARIPDYLWMAEDGMKMQSFGSQSWDAALAMQALLSCNIPHEIGPALNTGHQFIKNSQVRNNPPGDYKSMFRYMSKGSWTFSDCDHGWQVSDCTAENLKCCLLLSLLPPEMVGEKMEPERFYDAVNVILNMQSKNGGLPAWEPASSYYWMEWLNPVEFLEDLIIEHQHVECTSSALQAILLFRKQYPGHRRKEINNFINKAVQFLQDIQLPDGSWYGNWGICYTYGTWFALKALSMAGKTYENCEALRKGANFLIKIQNPEGGFGESYLSCPYKRYIPLDGKRSNLVQTAWGMMGLISAGQADVDPTPIHRAAKLLINSQTEDGDFPQEEITGEFFKNCTLHFAAFREVFPVMALGEYCNKDPARCSFSSLTRPPRVAQWFGIGSAQTLSIRSNYSSLFEFHKANHPLKKAQRVEEEEEGRKLEPQPSLSTSQSCSSPRCIISPSAFFPTPCWRTLNAVQLNPSHLIMHRLLFRDSILVSKLSALRVRPGFRITCSINRFSIIFCLIPVSANSVLFLVFSSFAREISIRPFHPLDRPHIFIFRFHLYQSGISKIQRPGSGGDLPQGGEYNPYPIARRVNSSHTVLMDDDIENASLGVYQDRQRTFPDMRSKVNTPLIFRILMGINIRVLLVLLLFAFGIIFYIGASTSPIIVFVFSICIVSFCFSIYLTKWVLSKDEGPQEMAQISEAIRDGAEGFFRTQYSTISKMAMLLAVVILCIYLFRSTTPQQESSGIGRSTTAYITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGFSAIVVVGMAVIGIAILYAAFHVWLDVGSPGSTKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTMAERCKIEDPSGFILFPLVVHSFDLVISSIGILSIRRGTRESGVKGPIEDPMTILQRGYSVTIVLAVLTFGVSTRWLLHTEQAPSAWFNFALCGLVGIITAYIFVWITKYYTDYKHEPVRSLALSSSTGHGTNIIAGVSLGLESTALPVLVISVSIVSAFWLGRTSGLVDEAGNPTGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVREITDLLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVSAFAHEPFKQVDIAIPEVFVGGLLGSMLIFLFSAWACSAVGRTAQEVVKEVRRQFIERPGIMDYTEKPEYGRCVAIVASASLREMIKPGALAIISPMAVGFLFRILGHYTGQPLLGAKVVAAMLMFATVSGILMALFLNTAGGAWDNAKKYIETGVLGGKGSDCHKAAVTGDTVGDPFKDTAGPSLHVLIKMLATITLIYDMESEEHLVVENRILPQLPAVIFGMLDGRRTTWQRMATVASKAEAAELSGCG 1823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1876189 1899437 - CrPI670011_09g001640.1 Cre09g0164 506832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0164 1823 Pfam Squalene-hopene cyclase N-terminal domain 100 356 IPR032697 -
Cre09g0164 1823 Gene3D - 119 411 - -
Cre09g0164 1823 Hamap Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 1038 1776 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Cre09g0164 1823 PANTHER TERPENE CYCLASE/MUTASE FAMILY MEMBER 1 751 IPR018333 GO:0005811(InterPro)|GO:0016104(InterPro)|GO:0016104(PANTHER)|GO:0016866(InterPro)|GO:0042300(PANTHER)
Cre09g0164 1823 MobiDBLite consensus disorder prediction 800 827 - -
Cre09g0164 1823 Pfam Inorganic H+ pyrophosphatase 1049 1770 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Cre09g0164 1823 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 121 407 IPR008930 -
Cre09g0164 1823 ProSitePatterns Terpene synthases signature. 602 616 IPR002365 GO:0016866(InterPro)
Cre09g0164 1823 Gene3D - 486 720 - -
Cre09g0164 1823 CDD SQCY_1 98 748 IPR018333 GO:0005811(InterPro)|GO:0016104(InterPro)|GO:0016866(InterPro)
Cre09g0164 1823 NCBIfam squalene/oxidosqualene cyclases 97 749 IPR018333 GO:0005811(InterPro)|GO:0016104(InterPro)|GO:0016866(InterPro)
Cre09g0164 1823 NCBIfam V-type H(+)-translocating pyrophosphatase 1043 1771 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Cre09g0164 1823 FunFam Terpene cyclase/mutase family member 386 755 - -
Cre09g0164 1823 SFLD Prenyltransferase Like 2 94 750 IPR018333 GO:0005811(InterPro)|GO:0016104(InterPro)|GO:0016866(InterPro)
Cre09g0164 1823 Pfam Squalene-hopene cyclase C-terminal domain 414 749 IPR032696 -
Cre09g0164 1823 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 348 753 IPR008930 -
Cre09g0164 1823 MobiDBLite consensus disorder prediction 800 814 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1934 Cre-Chr2:32677413 Cre09g0164 Cre-Chr9:1876189 0.00E+00 dispersed
Cre06g2036 Cre-Chr6:28110351 Cre09g0164 Cre-Chr9:1876189 4.70E-116 dispersed
Cre06g2700 Cre-Chr6:34440705 Cre09g0164 Cre-Chr9:1876189 0.00E+00 dispersed
Cre09g0001 Cre-Chr9:341113 Cre09g0164 Cre-Chr9:1876189 0.00E+00 dispersed
Cre09g0164 Cre-Chr9:1876189 Cre09g0165 Cre-Chr9:1911595 1.30E-249 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0164 K23025 - csv:101216883 1513.05