Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0167 ATGGCAAAACCAAAGAATTCAAATCCCCAACACAAAAGCAACCCTCTTCCAGTTACTCCGACCGGCAAAAAACCAAGAGACTGCAACAAACATCCGGTTTTCCGAGGCGTGCGGAAGAGAAGCTGGGGGAAATGGGTATCGGAAATCCGGCAACCGCGTAAGAAATCCCGAATTTGGCTCGGCACTTTTCCGACGCCGGAGATGGCAGCGCGTGCACACGACGCAGCAGCCTTATGCATCAAAGGCGATTCTGCCATCCTCAATTACCCTGAACTTGCAGAGTTCTTGCCCCGGCCGGCGTCGCTCATGCCGCACGACGTTCAGGCTGCCGCCGCCAAAGCCGCGGCGATGGTCAATTTGAATTCCTCTGCATTGCCGTCGCCGTCGGAGGAGGAGGAGGAGCTGAGTGAGATCGTCGAGTTGCCGAATATAGAAGACGATTTTGGTACTGTGTCGCTGAACGAGTTCGGATTGGTTACTGAGTCATGGGAATGGTGGGAGTCCGTGGCAATGCCGTTGGCGGCGGAATTCGGTTGCGGTTATTTTTCCGACCCAACGGCGGCGGAGGAAAGTTCTTACCCGAGCAGCTTTTACGGTGTTCTTTGGGATTAA 612 54.58 MAKPKNSNPQHKSNPLPVTPTGKKPRDCNKHPVFRGVRKRSWGKWVSEIRQPRKKSRIWLGTFPTPEMAARAHDAAALCIKGDSAILNYPELAEFLPRPASLMPHDVQAAAAKAAAMVNLNSSALPSPSEEEEELSEIVELPNIEDDFGTVSLNEFGLVTESWEWWESVAMPLAAEFGCGYFSDPTAAEESSYPSSFYGVLWD 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1934111 1934722 - CrPI670011_09g001670.1 Cre09g0167 506835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0167 203 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0167 203 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0167 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 133 IPR051032 -
Cre09g0167 203 MobiDBLite consensus disorder prediction 1 17 - -
Cre09g0167 203 CDD AP2 34 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0167 203 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0167 203 MobiDBLite consensus disorder prediction 1 34 - -
Cre09g0167 203 SMART rav1_2 33 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0167 203 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0167 203 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677(InterPro)
Cre09g0167 203 FunFam Ethylene-responsive transcription factor 2 32 91 - -
Cre09g0167 203 Pfam AP2 domain 32 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1686 Cre-Chr7:32302488 Cre09g0167 Cre-Chr9:1934111 1.20E-47 dispersed
Cre08g1165 Cre-Chr8:24893628 Cre09g0167 Cre-Chr9:1934111 5.50E-41 dispersed
Cre09g0167 Cre-Chr9:1934111 Cre11g1934 Cre-Chr11:31117500 7.70E-42 dispersed
Cre05g0101 Cre-Chr5:1244466 Cre09g0167 Cre-Chr9:1934111 2.30E-34 transposed
Cre08g0161 Cre-Chr8:3693189 Cre09g0167 Cre-Chr9:1934111 1.80E-22 transposed
Cre06g1719 Cre-Chr6:14667212 Cre09g0167 Cre-Chr9:1934111 5.60E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54280 PF00847 AP2 5.50E-15 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0167 K09286 - csv:101217361 330.872