Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0209 ATGGGAATCAATTCCAATCGAGTTGAAAACTTGGAATGTCGTGAAACGGTGTTGACAATTCCGGCGGAGGCAATGCCGGCGCCGCCTCAACCGGAGGTTGAGATTCATAAAGTCTGTTTGCCTCCCAACAAAACTACGTTTCAGAAACTCAAGCACAAGTTATCGGAAGTGTTCTTCCCTGATGATCCGTTTCATAGATTCAAGAACCAAACGTGGGTTAGAAAAGTGCTTTTAGGCCTTCAATTTCTGTTCCCTGTTTTTCAGTGGGGCCCTGATTATACCCTCGCTCTTTTCAAGTCTGACATCGTTTCTGGTCTTACAATTGCTAGCCTTGCTATTCCCCAGGGAATAAGTTATGCGAAACTAGCAAATTTGCCTCCAATCATCGGATTATATTCAAGTTTTGTGCCTCCACTGATATATTCTATCCTTGGGAGCTCTAGGCATCTTGCTGTTGGGCCAGTATCAATTGCCTCTTTGGTCATGGGATCGATGATTACTGAGGCAGTCTCTTATAACGAAAACCCAACCCTGTATCTTAAGTTGGCTTTTACAGCTACTTTCTTTGCTGGTGTATTCCAAGCATCTTTAGGCTTGTTAAGGTTAGGCTTTGTGATTGATTTTCTGTCAAAGGCTACTTTGGTTGGCTTTATGGCTGGTGCAGCAGTCATTGTGTCATTGCAGCAACTCAAAGGGTTGCTTGGAATTGCCCATTTCACCACCAAAATGCAATTTATTCCTGTCATGTCTTCTGTTTTCCACCGCAAAGATGAGTGGTCCTGGCAAACTATTGTTTTAGGCTTCATTTTCCTACTGTTTCTTCTGGGAACAAGGCATATAAGCATCAAGAAACCAAAGCTTTTCTGGATTTCAGCCGCTGCTCCACTGACATCAGTTATTTTGTCCACTCTTTTAGTGTTCTTGCTCAGAGCAAAATTTCCTGGAATCTCAGTGATTGGTCATTTGCCAAAGGGTGTCAATCCTCCATCTATGAACATGCTGTACTTTACTGGTCCTCAATTGGCACTTGCCATTAAAACTGGCATTATAACTGGAATTCTCTCGCTCACCGAAGGAATTGCCGTAGGAAGGACGTTTGCTGGTTTGAAAAACTATCAAGTGGATGGGAATAAAGAAATGATGGCTATTGGTTTTATGAACATGGCTGGATCTTGTTCTTCATGCTATGTCACTACAGGATCATTTTCTCGGTCTGCTGTGAATTACAATGCTGGGGCACAAACAGCAGTTTCAAATGTTGTGATGTCTGCAGCTGTGCTCATAACATTGTTGTTTCTGATGCCACTGTTCCATTATACTCCAAATTTCATCCTAGCAGCCATCATTATAACAGCAGTAATTGGACTAATTGATTACCAAGCAGCCTGTAGGTTGTGGAAAGTTGACAAACTCGATTTTTTAGCTTGTGTTTGTTCTTTCTTTGGTGTTCTTTTCATCTCGGTTCCATTGGGTCTTGCCATCGCAGTTGGAGTCTCTGTTTTCAAGATTCTTCTGCATGTCACCAGGCCAAACACCATGGTTTTGGGGAATATTTCTGGAACTCATATATTCCAAAACCTTGACCGTTACCGGGATGCCTCAAGGGTGCCTTCATTTCTCATTCTTTCCATTGAATCTCCAATCTACTTTGCAAATTCAACATACCTACAAGAAAGGATTCTTAGGTGGGTTAGGGAAGAAGAAGAGCGGATAAAATCGACTAACGATAGCCCACTGAAATGTGTAATACTAGACATGACAGCTGTGACGTCCATAGATACAAGTGGCATAGAAACCGTATGTGAGCTTAGGAAGATGTTGATGCAAAAATCATTGCAGTTTGTGCTAGCAAATCCTGGTGGAAATGTGATGGAAAAACTGTATAAATCAAAGGTGTTGGAGCAGTTCGAGTTTAACGGTCTCTACCTCTCAGTTGGAGAAGCTGTGAAGGACATTTCTTCTGTATGGAAGAGGCTGCCATAA 1983 42.21 MGINSNRVENLECRETVLTIPAEAMPAPPQPEVEIHKVCLPPNKTTFQKLKHKLSEVFFPDDPFHRFKNQTWVRKVLLGLQFLFPVFQWGPDYTLALFKSDIVSGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLIYSILGSSRHLAVGPVSIASLVMGSMITEAVSYNENPTLYLKLAFTATFFAGVFQASLGLLRLGFVIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIAHFTTKMQFIPVMSSVFHRKDEWSWQTIVLGFIFLLFLLGTRHISIKKPKLFWISAAAPLTSVILSTLLVFLLRAKFPGISVIGHLPKGVNPPSMNMLYFTGPQLALAIKTGIITGILSLTEGIAVGRTFAGLKNYQVDGNKEMMAIGFMNMAGSCSSCYVTTGSFSRSAVNYNAGAQTAVSNVVMSAAVLITLLFLMPLFHYTPNFILAAIIITAVIGLIDYQAACRLWKVDKLDFLACVCSFFGVLFISVPLGLAIAVGVSVFKILLHVTRPNTMVLGNISGTHIFQNLDRYRDASRVPSFLILSIESPIYFANSTYLQERILRWVREEEERIKSTNDSPLKCVILDMTAVTSIDTSGIETVCELRKMLMQKSLQFVLANPGGNVMEKLYKSKVLEQFEFNGLYLSVGEAVKDISSVWKRLP 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2213096 2216822 - CrPI670011_09g002090.1 Cre09g0209 506877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0209 660 ProSiteProfiles STAS domain profile. 529 652 IPR002645 -
Cre09g0209 660 Gene3D STAS domain 509 654 IPR036513 -
Cre09g0209 660 CDD STAS_SulP_like_sulfate_transporter 530 645 - -
Cre09g0209 660 FunFam Sulfate transporter 31 509 655 - -
Cre09g0209 660 Pfam STAS domain 532 648 IPR002645 -
Cre09g0209 660 PANTHER SULFATE TRANSPORTER 71 651 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g0209 660 SUPERFAMILY SpoIIaa-like 534 650 IPR036513 -
Cre09g0209 660 NCBIfam sulfate permease 85 648 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g0209 660 ProSitePatterns SLC26A transporters signature. 127 148 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Cre09g0209 660 Pfam Sulfate permease family 98 477 IPR011547 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g0209 Cre-Chr9:2213096 Cre11g0620 Cre-Chr11:3312001 7.40E-227 dispersed
Cre09g0209 Cre-Chr9:2213096 Cre09g0691 Cre-Chr9:6600917 1.30E-215 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0209 K17471 - csv:101203079 1226.08