Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0228 ATGAGAAAAGAAGAAAATCATATCAGGGCTAATATTGGGGAATTCCCTGGTAGAATTACACGTGCTCGGGCTGCTGCATTTAGTGCATCAGCACAGCTGCCTCCAAAAGTTCCTGCACATCATCAAGAGAGGCGGGTTGCCCGAGCTAATCTGAAAAGAGCTGCTTCTGAAGAAAATAGCTGCCATTCTATTGCTAAATCAGCTCGACCATGTAAAAGGAGGGCTGTGCTTCAGGATGTCAGCAATATAGGCTGTGAACCTTCGTACTCAAATTGTTTCAATGCAGCTAAAATTGAGCCCAATAGTAGTAAGCCGACAATCAGAAACCATCTCAAGAAGTCCAAAGGAGCCTCATCAGTTGGTGTGGCTAACTCCAAGGTTCCTCTAGGTCTTAGAACCAAAGGAGCTTCATCAGTTGGTGGGGCTTACTCCAAGCCTCTTGATCTTAGAACACAAGGTGTACAATCAAATGTCAAATCAAAAGCCAAGTTGAAAGTTGAGCATTCAAGTAATTCTGAAGACCCCAATACACATCATCGGGTAAGTGGTATAAAGGAAGAGGTCACAAGTGATTTTCGGGATGATAATTGGAGGTCTCAAAGTCCTTCAGAGTCTCAAAATTTTCAAAATAAAGATAAAGTGTTGCTTCTGGGGACAAAAAGCAACCTGGACATTGCAGACATTGATTGTAATGACAGAGATGCTCAGCTGTGCACTGTCTATGCCCAGGATATCTATAACAATTTACGTGTAGCTGAGCTAACCAGAAGACCACGTCCAAATTTCATGGAAACAGTGCAGACTGATATTACCCAAAGCATGCGGGGTATATTGGTTGATTGGCTTGTAGAGGTGTCGGAGGAATACAAGTTAGTACCAGATACACTCTACCTAACTGTTTTTTTCATCGATTGGTTTCTCTCCCAAAATTACATCGAGAGACAAAAGCTTCAACTGTTGGGTATCTCTTGCATGTTAATTGCCTCGAAGTATGAAGAAATTTGTGCACCACGTGTTGAAGACTTTTGTTTCATCACTGACAGCACCTACACAAAAGAGGAGGTACTGAATATGGAAGGTCAAATATTGAAGCATATGGGCTTTCAACTTTCTGCACCAACTGCAAAATCTTTCCTCAGGAGATATGTTCGAGCTGCACAAACGACATATAAGACCCCTAGTCTTGAACTCGAGTGCCTCGCCAACTATCTAGCTGAATTAACACTGGTTGACTACAGATTCTTGAATTTTCTTCCCTCAGTTATAGCTGCATCAGCTGTATTTCTTTCCAAATGGACGTTGGATCAGTCGAGTCACCCATGGAATTCAACACTGGAATATTATACCTCATATAAAGCATCAGATCTGAAACAAACTGTTGTTGCTTTACAAGATTTACAGTTGAACACCAACGGTTGTCCACTTAGTTCGATTCGTGTCAAGTATCGGCAAGAAAAGTTCAAAGCTGTCGCAACTTTGTCTTCCCCAAAATTACTTGATACGCTATTCTGA 1512 41.73 MRKEENHIRANIGEFPGRITRARAAAFSASAQLPPKVPAHHQERRVARANLKRAASEENSCHSIAKSARPCKRRAVLQDVSNIGCEPSYSNCFNAAKIEPNSSKPTIRNHLKKSKGASSVGVANSKVPLGLRTKGASSVGGAYSKPLDLRTQGVQSNVKSKAKLKVEHSSNSEDPNTHHRVSGIKEEVTSDFRDDNWRSQSPSESQNFQNKDKVLLLGTKSNLDIADIDCNDRDAQLCTVYAQDIYNNLRVAELTRRPRPNFMETVQTDITQSMRGILVDWLVEVSEEYKLVPDTLYLTVFFIDWFLSQNYIERQKLQLLGISCMLIASKYEEICAPRVEDFCFITDSTYTKEEVLNMEGQILKHMGFQLSAPTAKSFLRRYVRAAQTTYKTPSLELECLANYLAELTLVDYRFLNFLPSVIAASAVFLSKWTLDQSSHPWNSTLEYYTSYKASDLKQTVVALQDLQLNTNGCPLSSIRVKYRQEKFKAVATLSSPKLLDTLF 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2391492 2396213 + CrPI670011_09g002280.1 Cre09g0228 506896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0228 503 Gene3D - 244 492 - -
Cre09g0228 503 SMART cyclin_7 377 465 IPR013763 -
Cre09g0228 503 SMART cyclin_7 280 364 IPR013763 -
Cre09g0228 503 MobiDBLite consensus disorder prediction 131 208 - -
Cre09g0228 503 Pfam Cyclin, C-terminal domain 373 495 IPR004367 -
Cre09g0228 503 SMART Cyclin_C_2 373 496 IPR004367 -
Cre09g0228 503 FunFam Mitotic cyclin 6 258 358 - -
Cre09g0228 503 SUPERFAMILY Cyclin-like 373 498 IPR036915 -
Cre09g0228 503 FunFam Cyclin A1 360 492 - -
Cre09g0228 503 Gene3D - 258 371 - -
Cre09g0228 503 CDD CYCLIN_AtCycA_like_rpt1 234 369 - -
Cre09g0228 503 CDD CYCLIN_AtCycA-like_rpt2 373 487 - -
Cre09g0228 503 PANTHER CYCLINS 224 483 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cre09g0228 503 PIRSF Cyclin_A_B_D_E 35 502 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cre09g0228 503 MobiDBLite consensus disorder prediction 161 198 - -
Cre09g0228 503 Pfam Cyclin, N-terminal domain 244 371 IPR006671 -
Cre09g0228 503 SUPERFAMILY Cyclin-like 234 370 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1013 Cre-Chr2:7741902 Cre09g0228 Cre-Chr9:2391492 4.30E-67 dispersed
Cre05g1879 Cre-Chr5:30930794 Cre09g0228 Cre-Chr9:2391492 2.40E-113 dispersed
Cre05g2222 Cre-Chr5:33883535 Cre09g0228 Cre-Chr9:2391492 4.20E-79 dispersed
Cre08g1567 Cre-Chr8:28289464 Cre09g0228 Cre-Chr9:2391492 3.60E-77 dispersed
Cre09g0228 Cre-Chr9:2391492 Cre11g2261 Cre-Chr11:34371556 9.80E-46 dispersed
Cre08g0548 Cre-Chr8:18186605 Cre09g0228 Cre-Chr9:2391492 2.00E-83 transposed
Cre08g1231 Cre-Chr8:25516459 Cre09g0228 Cre-Chr9:2391492 3.50E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0228 K06627 - csv:101222299 925.235