Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0247 ATGACTATAGCTCAGCTCACCAACAATTTCAAAGCTAATTCATTTCCTCGAAACAACTATCCAAATTGCAAACCAAAAAGAGTTGATCTCTGGAGTTTTCATCAGTTCCATAACAGAAGGTCAAGGTGCAATTTGGGAATGGCGACTAGCAATGAAATCATGTTTAATTGCTTTGTTCTGGTTTTGCTTCTGCCGTTTTCAAACGCCCAATCTGACGTATTGGCACAAGGCCAAAAACTAACACCTGAGTCTACGCTAATTTCGGCAACGGAGACTTTTTCGCTCGGGTTTCACAGTCCTAGCCTATTGAACAACAGTTACATAGCAATTTGGTACACTAGAGATTCACAGAATCCAGTGTGGATTGCCAATCGTAATTTTGCATTTCCCAGAGATTTTGGGACACCCTGTCTCACAATTGACAGCAATGGCAGCTTGAAGATTGTCCCTAAAGAAGGAAAAGGAAGAAATGGCTATAATTTCTATCTCTTTGAAGTTGAAGAACCCACCAACAGCAGCGCCATTCTTCTAGATAGTGGCAACTTTGTATTGGGTGTGTTGAATCCAGATGGGTCAATTAAGCGACAGCTATGGCAGAGTTTTGATCATCCAACAGACACTCTTCTTCCTGGGATGAAGCTTGGGATCAACCACAAAACTGGAGCCACTTGGTCTATAACATCCCGAAGAGGTGACTATTCTGTTCTATCAGGTTCTTTTACCCTCATAATGAATCCCAACAATACAAATCAGTTGCTGATATTACTTAGAGGAGCCGTTTTCTGGACCAGTGGGAACTGGCAGGACGGTCGATTTGAGTTCTCGGAAGAACTTTCCAACATTAACAATCGAGATTCATTGGGGAACGACGGGAAATTGGTGGGGCGTAATTCGAATTCAGAAGTTGAATGTCCCTATTTTGAAAATGAGTTGTTTGAGCCTAAGAATGTTTCTGAAGGTGGGTGTGTGGGGAAAACGCAGCACAAAGTACCTGAGTGCCGAAATCCACCAAAACAGTTTTCCACTTCACAGAGATTTGGAAACATGGAAGGAAATGGTTCAAGGTTCAGAGAAAGTGAGAACCTGACCATTTATGATTGCGAAAAGAATTGCATTTCAAGCTGTGATTGCATTGCCTTTAGTTCTACAAACGAAGAAGGCACTGGCTGTGAGATGTGGAATGTGGGCGCAACGTTTATTCCAGTGGAGGGAGGCAAACGGATTATTTGGTCTCTTGAGGTGACTGAAGGGAAAGCTCCTGCAGGAGAAAAAAGGGTATGGTTGCAAGTTACAATCGGCCTAATAGTACCTGTAACTTCTCTCCTTTTGTGTTTTATTGTCTATCTCAAATGGAAAACACAAATACTCCAAGCTATTGGAAAAATGAGGAAGGATTCTGAACATCAAAATTTTCTACAAGAAATGGGGGCCAAATCTAAGAGTATTAACATTCTAACAATGAACAAGCAAAGAAGAGACTTAAAGAACTCCGAATTGCAGTTTTTCAGTTTTAGAAGTATAGTTTCTACAACAAACAATTTCGCTGACGATTGTAAGCTCGGACAAGGTGGGTTTGGACCAGTTTATAAGGGAAGTTTGGCCGATGGCCAAGAAGTTGCCATTAAAAGACTTTCAAAGAATTCTGGACAAGGGCTAGAGAAGTTCAAGAATGAAGTCATACTGATTGCCAAACTGCAACACACTAATCTGGTTAGGCTTATTGGTTGCTGCATTCATAAAGAAGAGAGGTTATTGGTGTATGAGTACATGCCCAACAAAAGCCTTGACTCCTTCCTCTTTGATCCAGTTAGAAAGCTAATTCTAGATTGGGACAAACGCCTACACATAATCCAAGGGATAGTTCAAGGACTACTCTACCTTCACAACTACTCGAGATTACGAATAGTTCATCGAGATTTAAAAGTCAGCAACATCTTGCTTGATGATGAGATGAATGCAAAAATATCAGATTTTGGCATGGCCAAAATCTTTAATCTCACAGAGGAAGAAGCAAATACTAATCACATTGTTGGTACATTTGGTTATATAGCACCTGAAAATGCAATGGGGGGCATTTCCTCCCTAAAATCAGATGTTTACAGCTTTGGAGTGTTATTATTGGAGATCATAACAGCTCAAAAAAACTACAACAATTATGATGTGGAACGACCTATGAATCTCATTGGATATGCATGGGAAGTGTGGGTGAATGGTAGAGGAGAAGAATTAATTGATCCAACTTTGTGCAACTCTGATCAGAAACCAAAGGCTCTAAGATGCATCCATGTTAGTCTTCTATGCGTCCAACAAATACCAACAGATAGACCTACCATGCTTGATGTTTATTTCATGATTCAGAATGATTCTACTCAACTTCCATTGCCAAAACAACCTCCGTTTTTCATCACCCAGAACTCCAAACTGGAAGTGGTGACAGATGGCATTGAACTCAAATCAGAATCAACAACAGAAATATGTTCTTCAAATAGTATGTCAGTTTCCATGATGGTTGCGAGATGA 2520 40.4 MTIAQLTNNFKANSFPRNNYPNCKPKRVDLWSFHQFHNRRSRCNLGMATSNEIMFNCFVLVLLLPFSNAQSDVLAQGQKLTPESTLISATETFSLGFHSPSLLNNSYIAIWYTRDSQNPVWIANRNFAFPRDFGTPCLTIDSNGSLKIVPKEGKGRNGYNFYLFEVEEPTNSSAILLDSGNFVLGVLNPDGSIKRQLWQSFDHPTDTLLPGMKLGINHKTGATWSITSRRGDYSVLSGSFTLIMNPNNTNQLLILLRGAVFWTSGNWQDGRFEFSEELSNINNRDSLGNDGKLVGRNSNSEVECPYFENELFEPKNVSEGGCVGKTQHKVPECRNPPKQFSTSQRFGNMEGNGSRFRESENLTIYDCEKNCISSCDCIAFSSTNEEGTGCEMWNVGATFIPVEGGKRIIWSLEVTEGKAPAGEKRVWLQVTIGLIVPVTSLLLCFIVYLKWKTQILQAIGKMRKDSEHQNFLQEMGAKSKSINILTMNKQRRDLKNSELQFFSFRSIVSTTNNFADDCKLGQGGFGPVYKGSLADGQEVAIKRLSKNSGQGLEKFKNEVILIAKLQHTNLVRLIGCCIHKEERLLVYEYMPNKSLDSFLFDPVRKLILDWDKRLHIIQGIVQGLLYLHNYSRLRIVHRDLKVSNILLDDEMNAKISDFGMAKIFNLTEEEANTNHIVGTFGYIAPENAMGGISSLKSDVYSFGVLLLEIITAQKNYNNYDVERPMNLIGYAWEVWVNGRGEELIDPTLCNSDQKPKALRCIHVSLLCVQQIPTDRPTMLDVYFMIQNDSTQLPLPKQPPFFITQNSKLEVVTDGIELKSESTTEICSSNSMSVSMMVAR 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2571365 2574819 - CrPI670011_09g002470.1 Cre09g0247 506915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0247 839 ProSiteProfiles Bulb-type lectin domain profile. 71 197 IPR001480 -
Cre09g0247 839 CDD STKc_IRAK 520 787 - -
Cre09g0247 839 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 479 589 - -
Cre09g0247 839 Gene3D - 65 202 IPR036426 -
Cre09g0247 839 MobiDBLite consensus disorder prediction 336 353 - -
Cre09g0247 839 SUPERFAMILY alpha-D-mannose-specific plant lectins 109 268 IPR036426 -
Cre09g0247 839 ProSiteProfiles Protein kinase domain profile. 514 801 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g0247 839 ProSiteProfiles PAN/Apple domain profile. 333 414 IPR003609 -
Cre09g0247 839 SMART blect_4 71 204 IPR001480 -
Cre09g0247 839 CDD B_lectin 80 204 IPR001480 -
Cre09g0247 839 PIRSF SRK 47 298 IPR024171 GO:0004674(InterPro)
Cre09g0247 839 PIRSF SRK 288 839 IPR024171 GO:0004674(InterPro)
Cre09g0247 839 MobiDBLite consensus disorder prediction 333 353 - -
Cre09g0247 839 SUPERFAMILY Protein kinase-like (PK-like) 498 808 IPR011009 -
Cre09g0247 839 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre09g0247 839 Gene3D Transferase(Phosphotransferase) domain 1 590 793 - -
Cre09g0247 839 Pfam D-mannose binding lectin 120 230 IPR001480 -
Cre09g0247 839 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 191 801 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cre09g0247 839 SMART serkin_6 514 783 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g0247 839 Pfam Protein tyrosine and serine/threonine kinase 518 727 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre09g0247 839 Pfam PAN-like domain 360 394 IPR003609 -
Cre09g0247 839 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 590 793 - -
Cre09g0247 839 Gene3D Phosphorylase Kinase; domain 1 487 589 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g0200 Cre-Chr9:2138494 Cre09g0247 Cre-Chr9:2571365 3.40E-189 dispersed
Cre09g0247 Cre-Chr9:2571365 Cre10g0828 Cre-Chr10:8941168 2.00E-115 dispersed
Cre09g0247 Cre-Chr9:2571365 Cre04g1858 Cre-Chr4:36262618 5.70E-123 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64381 PF00069 Pkinase 3.20E-45 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0247 - - - 0.0