Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0262 ATGAGCCAATTGATTTGCTTGACTCCGACGATGGCGAAAAACACAAGTTGCCTCCCACTACTCAATCGAATCATTGGGGTTTCAGGCTGCTTAAACTTAGAGGGTTTTCAGATGACATATTTTCCTGGTTTAAGTAATCAAAGAGACTCCATGTTAGGTGATCAGAAACTTGGTTCTTCTTGCCAAGAACAGCCTCTTTGTTCTGGGAATTTGATGATGTTCATGAATCAAGACCCTTCTTGCAGAGATTATTCAGAGATTTTTTCTGGGGTTTCTTCAAACTATGTTGAAACTGTGGGAGATAGAAGTAATGTCGAAATGGCTTTCATTCCACCAGTTGTGGGAATTTTAGATGACTCAAATTTCCAATGTCAAGGTGTTTCACTTAGCCTTTCCACACACTCACCCTCTGTTGTTTCTATGCCTTCATTTCCTCACCAATATCAGACCCCTGCTATGCCTTCTTCATTCATCAATAATGCACCTCCCTTGATCTTCGAGAAGAGGCCGAATCTGAAACCTTCTATAACTGATGCGAAAAATGGCATGTATATAGCGGTGGGTTCTGGATATTCGACGTTGAATACGGTATACATCGAAGCTGCACAGCAGTTGCTCGACGAAATGGTTAGCATCCGCGAAGCTTTGAAAGAGTTGAAGTCTAAGAAACTCAAAGCTTCCAATGGTTTGGGTGTTGATTCCTGCAGAGAAAATGATGGTGGATCTAATGATCTGACTGGGGAGATGTGTTGCAATGTGAGGCAGTCGCCGATTGCCAATCCGTCGGGGGATCTATCGCCTGCCGAACGTCAGGACTTGAAGAACAAAAACTCAAAGCTTTTGTCCTTGTTGGGTGAGGTGGATCGAAGATACAGGCAATATTACCAACAGCTGCAATATTTGGCATCGTCTTTTGACATGGTAGCAGGCCGAGGGGCTGCAGATTTCTACACTGCACTCGCACACCAAACTATTTCGTGCCACTTTCGCCGCTTGCGAGATGCAATCAATGCACAGATTGAGGTCACCAGGAGAACCTTGGGGGAGCAAGATGCTTTACATTCTGGTCAAGAGGGCATTCCTCGTCTCCGCTTTGTCGACCAACACCTCAGGCAACAGAGAGCTCTTCAGCAGCTTGGTGTCACGCCACATAGTTGGAGGCCTCAACGAGGGCTTCCCGAAAGTTCCGTGTCGATTCTTCGCGCTTGGCTGTTCGAACACTTCCTCCATCCATATCCCAAGGACTCCGAGAAACTTAAGCTAGCTAGACAAACTGGCCTGACCAGAAACCAAGTCGCAAACTGGTTTATAAATGCACGTGTTCGGCTATGGAAACCAATGGTAGAGGAGATGTACAAAGAAGAATTTGGAGACTCCAACATTGATATCAAATCCTCACCAGAAAATGCATCCAAAGTATCATGGAACAATTCACTATTCTCCGAAGATAAGGGAGGAGACGAGATGCACGACAGCACGAAATCTGCAGCAAACAAAGGCGAGCGAGTCCTCTACCGCCCGTGTGCTACCGACGACATGATCAACTCGAGTAACTTCTCAATGGGAGGAGGAGGAGATGTTTCACTTGCACTGGAGTTGAAGCATTGTGAAGGTGATGAATTTGGGATGTTTGGGAATAACAATAGAATGGTTGGTTCTGTGGAGCTTGAGGCACAAGATTTTCCATGTTTGGAACCAGAAAGACATCGTCAATGCAGGCTCACAAGTTCAAATATGTTGCATGATTTTATTGGCCTGGATCTGTGTCGGTCTCATTCTTCCAAATCAACCACTAAGCTAAATTCAACTAACTTGCCTCCACATGCAGTGGCGGATTTACACTCACTACTACTTCTTCTTCTTCTTCCTCCTCATCACTGTTTTCACTTCACTGCAATTTCGTCGCGAAGTGGGGGAGGTTTGAGCTTGTGCGCGTTGAAACATCGATCTCCTGTAATACGCATCATGAAACGCCCCTTTCTATCTGTTACAATGGCGAAGAAGAGATGGCCGTTGATGATCTTAGCATTGGTTTCAATTTCCACGGCAATGGTTTTCTTCATGAGGACTACGTTCGATTCTTGTAGTGGTAATGGAAATAGACGTTTTGTGGAAGAAAATGGTATCGACTCACAGATTCATTCCTCCCAAATCGAGAGAAAAGCTCCGAATCCTCTTGATTTCATGAAGTCCAAGCTCGTCCTCTTGGTCTCACATGAGCTCTCTCTTTCTGGTGGGCCTCTACTACTCATGGAGCTTGCATTTTTGTTGAGAGGCGTCGGTACTCAAGTTGTTTGGATTACCAATCAAAAGCCATCGGAGCCTGATGAAGTAGTGTACAGTTTGGAGCGCAAGATGTTAGATCGAGGAGTGCAGGTTTTATCTGCTAAGGGACAAGAAGCTGTGGAAACCGCTCTAAAAGCTCATTTGGTTGTTCTAAATACCGCTGTTGCTGGGAAATGGTTGGATGCTGTCCTTAAGGAAAATGTTCCCCGTGTCCTTCCCAAGGTTCTGTGGTGGATTCATGAGATGCGAGGGAATTATTTCAAAGTTGAGTATGTGAAGCACCTCCCTTTTGTTGCAGGTGCTATGATTGATTCACATACAACTGCAGAATACTGGAAAAACAGAACACGGGAACGTTTAGGGATTCAAATGCCTGAAACTTATGTCGTGCATCTTGGAAATAGTAAGGACCTTATGGAAGTGGCTGAAAATAATGTGGCCAAGAGGGTTCTTCGAGAGCATATTCGTGAGTCCCTTGGAGTTCGGAATGAAGATATATTGTTTGCAATTATAAATAGTGTTTCGCGTGGGAAAGGTCAGGATTTATTTCTCCGGGCCTTTCATCAGAGCCTGCAAATGATCCAAGATAAAAAGCTGCGGGTACCAAGGATACATGCAGTGGTAGTTGGCAGTGACATGAGTGCTCAAACAAAGTTTGAAACAGAACTGCGCAACTTTGTGAATGAGAATAAAATTCAGGATCGTGTTCATTTTGTCAACAAAACCCTGTCTGTGGCTCCTTATCTCGCTTCTATTGATGTTCTTGTTCAAAACTCTCAGGGTAGGGGAGAATGCTTTGGAAGGATAACCATTGAAGCCATGGCGTTTCAACTACCTGTGCTGGGCACGGCTGCTGGAGGAACAATGGAGATCGTAGTGAACGGGACAACGGGTTTGCTGCATCCTGCAGGGAAAGAAGGTGTAACTCCACTGGCACATAACATTGTGAAGTTAGCGACACACGTCGAGCGAAGGCTGACCATCGGAAAGAAAGGATATGAGAGGGTGAGGCAAATGTTCCTGGAACAACACATGGGGCAAAGAATTGCTGTTGTTTTGAAGAAAGTTCTGGAGAAAGCAAAGAGCCACTCTAGTCATTAG 3387 45.0 MSQLICLTPTMAKNTSCLPLLNRIIGVSGCLNLEGFQMTYFPGLSNQRDSMLGDQKLGSSCQEQPLCSGNLMMFMNQDPSCRDYSEIFSGVSSNYVETVGDRSNVEMAFIPPVVGILDDSNFQCQGVSLSLSTHSPSVVSMPSFPHQYQTPAMPSSFINNAPPLIFEKRPNLKPSITDAKNGMYIAVGSGYSTLNTVYIEAAQQLLDEMVSIREALKELKSKKLKASNGLGVDSCRENDGGSNDLTGEMCCNVRQSPIANPSGDLSPAERQDLKNKNSKLLSLLGEVDRRYRQYYQQLQYLASSFDMVAGRGAADFYTALAHQTISCHFRRLRDAINAQIEVTRRTLGEQDALHSGQEGIPRLRFVDQHLRQQRALQQLGVTPHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLKLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSNIDIKSSPENASKVSWNNSLFSEDKGGDEMHDSTKSAANKGERVLYRPCATDDMINSSNFSMGGGGDVSLALELKHCEGDEFGMFGNNNRMVGSVELEAQDFPCLEPERHRQCRLTSSNMLHDFIGLDLCRSHSSKSTTKLNSTNLPPHAVADLHSLLLLLLLPPHHCFHFTAISSRSGGGLSLCALKHRSPVIRIMKRPFLSVTMAKKRWPLMILALVSISTAMVFFMRTTFDSCSGNGNRRFVEENGIDSQIHSSQIERKAPNPLDFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTQVVWITNQKPSEPDEVVYSLERKMLDRGVQVLSAKGQEAVETALKAHLVVLNTAVAGKWLDAVLKENVPRVLPKVLWWIHEMRGNYFKVEYVKHLPFVAGAMIDSHTTAEYWKNRTRERLGIQMPETYVVHLGNSKDLMEVAENNVAKRVLREHIRESLGVRNEDILFAIINSVSRGKGQDLFLRAFHQSLQMIQDKKLRVPRIHAVVVGSDMSAQTKFETELRNFVNENKIQDRVHFVNKTLSVAPYLASIDVLVQNSQGRGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPAGKEGVTPLAHNIVKLATHVERRLTIGKKGYERVRQMFLEQHMGQRIAVVLKKVLEKAKSHSSH 1128
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2685876 2695568 + CrPI670011_09g002620.1 Cre09g0262 506930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0262 1128 Pfam Homeobox KN domain 403 442 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre09g0262 1128 SMART HOX_1 386 450 IPR001356 GO:0003677(InterPro)
Cre09g0262 1128 PANTHER GLYCOSYLTRANSFERASE 662 1125 - -
Cre09g0262 1128 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 729 1120 - -
Cre09g0262 1128 FunFam UDP-Glycosyltransferase superfamily protein 904 1102 - -
Cre09g0262 1128 Pfam Glycosyl-transferase family 4 730 909 IPR041693 -
Cre09g0262 1128 Coils Coil 199 222 - -
Cre09g0262 1128 Pfam Glycosyl transferases group 1 915 1096 IPR001296 GO:0016757(InterPro)
Cre09g0262 1128 Pfam Associated with HOX 197 336 IPR006563 -
Cre09g0262 1128 SUPERFAMILY Homeodomain-like 387 453 IPR009057 -
Cre09g0262 1128 Gene3D - 383 460 - -
Cre09g0262 1128 SMART prehox3 180 338 IPR006563 -
Cre09g0262 1128 CDD homeodomain 386 447 IPR001356 GO:0003677(InterPro)
Cre09g0262 1128 CDD GT4_PimA-like 761 1112 - -
Cre09g0262 1128 Gene3D Glycogen Phosphorylase B; 902 1102 - -
Cre09g0262 1128 ProSiteProfiles 'Homeobox' domain profile. 383 446 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1655 Cre-Chr7:32026378 Cre09g0262 Cre-Chr9:2685876 1.90E-37 dispersed
Cre09g0262 Cre-Chr9:2685876 Cre11g0897 Cre-Chr11:6157965 1.30E-93 dispersed
Cre09g0262 Cre-Chr9:2685876 Cre10g1946 Cre-Chr10:34169119 3.10E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54287 PF00534 Glycos_transf_1 2.40E-20 CL0113 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0262 - - - 0.0