Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0304 ATGCATACTCGTATGGCTCAAAGTGAAGAAGGGAAGAAGAGGGTTCAAATGGGAGAGAGATTAGGAGGTTATGCTATGAATCTTCTTGGTATTTTACTTCCCATGTGGGTTTTCTATTCCTTCTTCCCAATAATTGATGCCAGACCACACCTTGCTGGGTTTTCAATTTCTAGTACTGTTTTTGCTTCTCACACACATCCCATCTCTCTCATTGTTGCCAAAATGGAAGCTCAATCCCCAGGAGTTGCGGAGGTTAAAGTAGTTCACCACCAAGATTTGAACAAGAGAATTCTTATAGCATTGATTGTTTCTTCCACTCTTCTTGGAGTTATACTGCTGTTCCTTTTGTGTTTTTGGATATATCGTCGAAAAACGTCGAACCTTGATGATGGAAAATGTCAAAAGAATTTGGAGGCTTCGAAAGGGATGCCGCTAAATCCCATCATATCCAGATTTAACTCCTTGAGGTTGGCTAACTTTAAAGGTTCGGTTTCCACCATCGACTATAAACTGTTGGAAGCAGCAACTGACAACTTCAGCAAAAGCAATGTTTTGGGTGAAGGCGGTACGGGACATGTTTACAAAGCTTGCTTCAATGATAAATTGCTGGCAGCTGTGAAGAAAATAGACAATGGAGGACCGGACGCTGAAAGAGAATTCGAGAATGAGGTGAATTGGTTGTGTAAAATACGACATCAAAACATAATCAAACTCTTGGGGCACTGCATTCATGGCGAGACACGGTTTCTCGTTTACGAGATGATGCAGAATGGATCTTTGGAGTCTCAGTTGCACGGACCATCTCACGGATCGGCTTTAACTTGGCATATCCGGATGAAGATTGCTGTTGATGTTGCAAGAGGCTTGGAATATCTTCACGAACATCGAAGTCCTCCTGTTGTTCATCGCGATTTGAAATCGTCAAATATCCTTTTAGATTCAGACTTTAATGCCAAGCTCTCTGACTTTGGCCTTACTGTAAACTTGGGAGCTCAAAATAAAAACATAAAGCTCTCTGGAACTTTGGGTTATGTCGCCCCAGAGTACCTTTTAGACGGTAAACTAACAGATAAAAGTGATGTCTATGCGTTCGGAGTTGTTCTTTTGGAGCTTCTGACCGGGAAAAAACCCGTTGAGAAGATGGGACCTACTCAATCCCAATCTCTAGTTTCATGGGCCATCCCGCAGCTCAGTGACAGATCAAAGCTACCGAAAATTGTCGATCCTGTGATAAGGGACACGATGGATTTGAAGCACTTATACCAAGTTGCTGCTGTAGCTGTTTTATGTGTACAATCAGAACCGAGTTACCGACCGTTAGTTACCGACGTTTTGCATTCCCTCATCCCTCTTGTACCTGTAGAGCTTGGAGGATCTCTGAGAATTACAGAACCTCTGCATCCGAAAGTGCCTTCGTCGACCCGCTAA 1428 43.0 MHTRMAQSEEGKKRVQMGERLGGYAMNLLGILLPMWVFYSFFPIIDARPHLAGFSISSTVFASHTHPISLIVAKMEAQSPGVAEVKVVHHQDLNKRILIALIVSSTLLGVILLFLLCFWIYRRKTSNLDDGKCQKNLEASKGMPLNPIISRFNSLRLANFKGSVSTIDYKLLEAATDNFSKSNVLGEGGTGHVYKACFNDKLLAAVKKIDNGGPDAEREFENEVNWLCKIRHQNIIKLLGHCIHGETRFLVYEMMQNGSLESQLHGPSHGSALTWHIRMKIAVDVARGLEYLHEHRSPPVVHRDLKSSNILLDSDFNAKLSDFGLTVNLGAQNKNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLTGKKPVEKMGPTQSQSLVSWAIPQLSDRSKLPKIVDPVIRDTMDLKHLYQVAAVAVLCVQSEPSYRPLVTDVLHSLIPLVPVELGGSLRITEPLHPKVPSSTR 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2962938 2967016 + CrPI670011_09g003040.1 Cre09g0304 506972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0304 475 ProSitePatterns Protein kinases ATP-binding region signature. 185 208 IPR017441 GO:0005524(InterPro)
Cre09g0304 475 Gene3D Phosphorylase Kinase; domain 1 147 254 - -
Cre09g0304 475 FunFam probable receptor-like protein kinase At1g80640 255 453 - -
Cre09g0304 475 SMART serkin_6 179 449 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g0304 475 Gene3D Transferase(Phosphotransferase) domain 1 255 453 - -
Cre09g0304 475 PANTHER OS01G0750732 PROTEIN 85 452 IPR050885 -
Cre09g0304 475 Pfam Protein tyrosine and serine/threonine kinase 182 390 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre09g0304 475 ProSiteProfiles Protein kinase domain profile. 179 449 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g0304 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre09g0304 475 SUPERFAMILY Protein kinase-like (PK-like) 156 448 IPR011009 -
Cre09g0304 475 FunFam Protein kinase superfamily protein 146 254 - -
Cre09g0304 475 CDD STKc_IRAK 185 451 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g0304 Cre-Chr9:2962938 Cre07g0511 Cre-Chr7:2886403 4.10E-70 dispersed
Cre11g1173 Cre-Chr11:9566514 Cre09g0304 Cre-Chr9:2962938 1.60E-38 transposed
Cre11g0808 Cre-Chr11:5328199 Cre09g0304 Cre-Chr9:2962938 1.40E-62 wgd
Cre05g1817 Cre-Chr5:30291038 Cre09g0304 Cre-Chr9:2962938 1.70E-119 wgd
Cre08g1301 Cre-Chr8:26089121 Cre09g0304 Cre-Chr9:2962938 1.70E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64382 PF00069 Pkinase 2.30E-47 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0304 - - - 0.0