Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0305 ATGGCCCGACCGCAACAGCGCTATCGTGGCGTTCGCCAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTGAAGACGAGAATATGGTTAGGGACATTCGAGACGGCGGAGGATGCAGCCCGAGCTTACGACGAGGCAGCACGGCTGATGTGCGGTCCAAAGGCACGAACCAACTTCCAATATAATCCGAACGACCAACAGTCGTCGTCGTCTTCTTCCTCCTCTTCGTCCAAGCTTCTCCCCGCCGCGCTGATAGCGAAATTACATAAATGCCATTTGGCCTCACTCCAAATTGCGAAAAAACACGTCCACAGACAACACCCCGGATTCGAGCCCAACTACACCGCCTACGGCGGATCACCTCCACCGAGCATTGCCGGAACCACCGCAGGCCCGTGGACGCCGGAAGATACGTGGGTCTACTCCGACGAAGGTCAAATGGAGATGAATAACAATAATAATAATAACAACATTCATCATCAACAATGCCTTCAACCTCTTGAAGATGATCATATTGAACAAATGATACAAGAGCTGCTACATCTCGGACCATTCGAAATTATTACATAA 582 50.86 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQYNPNDQQSSSSSSSSSSKLLPAALIAKLHKCHLASLQIAKKHVHRQHPGFEPNYTAYGGSPPPSIAGTTAGPWTPEDTWVYSDEGQMEMNNNNNNNNIHHQQCLQPLEDDHIEQMIQELLHLGPFEIIT 193
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 2974566 2975359 - CrPI670011_09g003050.1 Cre09g0305 506973
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0305 193 MobiDBLite consensus disorder prediction 61 80 - -
Cre09g0305 193 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0305 193 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0305 193 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 167 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Cre09g0305 193 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677(InterPro)
Cre09g0305 193 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0305 193 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Cre09g0305 193 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0305 193 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0305 193 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0305 193 CDD AP2 6 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1304 Cre-Chr8:26119715 Cre09g0305 Cre-Chr9:2974566 2.30E-44 dispersed
Cre09g0305 Cre-Chr9:2974566 Cre11g0788 Cre-Chr11:5085775 6.90E-24 dispersed
Cre09g0301 Cre-Chr9:2940898 Cre09g0305 Cre-Chr9:2974566 1.90E-15 proximal
Cre08g1303 Cre-Chr8:26112391 Cre09g0305 Cre-Chr9:2974566 5.00E-40 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54290 PF00847 AP2 8.20E-12 CL0081 Cre TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0305 - - - 0.0