Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre09g0328 | ATGGCGAAGATCTCACATCCTTCGCACAACAATTCCATTTCCACCATCGCTAATCCTCATTCTTCTCCAATTCGTCACAGCCAGAAGAAGGTACTGAAGCGCACGCGTAAGTCCGCTCCTCGAGATGCTCCCGCTCAGCGTAGCTCTGTATACCGTGGAGTCACTAGGCATAGATGGACGGGACGGTATGAGGCGCATTTGTGGGATAAGAATAGCTGGAATGAAGGACAAAATAAGAAAGGAAGACAAGTGTATTTAGGAGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGATCTTGCAGCGCTCAAGTACTGGGGAACTGAAACTGTTCTCAACTTTCCAATATTAACGTACCGAGACGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAAGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGTGGGGTTTCAAAGTACAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATTGGCAGAGTGTTTGGCAATAAATACCTTTACCTTGGAACATATGCTACCCAAGAAGAAGCTGCCGCAGCTTACGACAAAGCGGCCATAGAATACCGTGGCCTTAACGCCGTTACAAATTTCGACCTCAGCCGTTACATCAAATGCCTCCGTCCTGGGGAACAGGATATCCCCAACAATAATAACCGTCCGCCAAACCCTAACGCCGGCGAAACTACGTCAGAATTTGACCCCAATTCCCTCCTCGGATTCACCTTTCCGTCGCAATGTTCGAGCTCAGGCCAACCTGCCACCGAGCCACTGTCGGAACCTGGCGACGGTGACTCCTCCTCATCGTCCGCGGCGCTGGAGCTCCTACTCCATTCCTCAAAATTTAAAGACATAATAGAAAGAACATCCGCCACCGAGGCTCCACAGACGCCGCCGGAATCTGACCGGCCGCGCCGCTGTATTCCTGACGACATTCAAACTTACTTCGATTGTACTCAAGATCCCGGCGACATTGCCGAAGGCGACGACAGCATTTTTGGGTACCTAAATTCGTTTTTACCTTCATCAGTTTTTCACTGCGAACTCGATGCTTAA | 1089 | 49.04 | MAKISHPSHNNSISTIANPHSSPIRHSQKKVLKRTRKSAPRDAPAQRSSVYRGVTRHRWTGRYEAHLWDKNSWNEGQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGTETVLNFPILTYRDELKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAAAYDKAAIEYRGLNAVTNFDLSRYIKCLRPGEQDIPNNNNRPPNPNAGETTSEFDPNSLLGFTFPSQCSSSGQPATEPLSEPGDGDSSSSSAALELLLHSSKFKDIIERTSATEAPQTPPESDRPRRCIPDDIQTYFDCTQDPGDIAEGDDSIFGYLNSFLPSSVFHCELDA | 362 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3199921 | 3206407 | - | CrPI670011_09g003280.1 | Cre09g0328 | 506996 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre09g0328 | 362 | PRINTS | Ethylene responsive element binding protein signature | 51 | 62 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g0328 | 362 | PRINTS | Ethylene responsive element binding protein signature | 192 | 212 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g0328 | 362 | ProSiteProfiles | AP2/ERF domain profile. | 50 | 116 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g0328 | 362 | FunFam | AP2-like ethylene-responsive transcription factor | 151 | 212 | - | - | |
Cre09g0328 | 362 | ProSiteProfiles | AP2/ERF domain profile. | 152 | 210 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g0328 | 362 | SMART | rav1_2 | 50 | 122 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g0328 | 362 | SMART | rav1_2 | 152 | 216 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g0328 | 362 | Gene3D | AP2/ERF domain | 50 | 118 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g0328 | 362 | Gene3D | AP2/ERF domain | 151 | 212 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g0328 | 362 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Cre09g0328 | 362 | Pfam | AP2 domain | 151 | 202 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g0328 | 362 | Pfam | AP2 domain | 49 | 108 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g0328 | 362 | CDD | AP2 | 151 | 212 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g0328 | 362 | MobiDBLite | consensus disorder prediction | 299 | 318 | - | - | |
Cre09g0328 | 362 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 37 | 231 | - | - | |
Cre09g0328 | 362 | MobiDBLite | consensus disorder prediction | 223 | 281 | - | - | |
Cre09g0328 | 362 | FunFam | AP2-like ethylene-responsive transcription factor | 49 | 118 | - | - | |
Cre09g0328 | 362 | MobiDBLite | consensus disorder prediction | 220 | 281 | - | - | |
Cre09g0328 | 362 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cre09g0328 | 362 | SUPERFAMILY | DNA-binding domain | 151 | 212 | IPR016177 | GO:0003677(InterPro) | |
Cre09g0328 | 362 | SUPERFAMILY | DNA-binding domain | 49 | 117 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre06g2136 | Cre-Chr6:29134044 | Cre09g0328 | Cre-Chr9:3199921 | 2.70E-88 | dispersed | |
Cre09g0328 | Cre-Chr9:3199921 | Cre10g1625 | Cre-Chr10:30335105 | 3.30E-75 | dispersed | |
Cre09g0328 | Cre-Chr9:3199921 | Cre05g2383 | Cre-Chr5:35373934 | 1.10E-75 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54293 | PF00847 | AP2 | 2.40E-13 | CL0081 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre09g0328 | K09285 | - | csv:101206499 | 619.002 |