Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0328 ATGGCGAAGATCTCACATCCTTCGCACAACAATTCCATTTCCACCATCGCTAATCCTCATTCTTCTCCAATTCGTCACAGCCAGAAGAAGGTACTGAAGCGCACGCGTAAGTCCGCTCCTCGAGATGCTCCCGCTCAGCGTAGCTCTGTATACCGTGGAGTCACTAGGCATAGATGGACGGGACGGTATGAGGCGCATTTGTGGGATAAGAATAGCTGGAATGAAGGACAAAATAAGAAAGGAAGACAAGTGTATTTAGGAGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGATCTTGCAGCGCTCAAGTACTGGGGAACTGAAACTGTTCTCAACTTTCCAATATTAACGTACCGAGACGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAAGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGTGGGGTTTCAAAGTACAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATTGGCAGAGTGTTTGGCAATAAATACCTTTACCTTGGAACATATGCTACCCAAGAAGAAGCTGCCGCAGCTTACGACAAAGCGGCCATAGAATACCGTGGCCTTAACGCCGTTACAAATTTCGACCTCAGCCGTTACATCAAATGCCTCCGTCCTGGGGAACAGGATATCCCCAACAATAATAACCGTCCGCCAAACCCTAACGCCGGCGAAACTACGTCAGAATTTGACCCCAATTCCCTCCTCGGATTCACCTTTCCGTCGCAATGTTCGAGCTCAGGCCAACCTGCCACCGAGCCACTGTCGGAACCTGGCGACGGTGACTCCTCCTCATCGTCCGCGGCGCTGGAGCTCCTACTCCATTCCTCAAAATTTAAAGACATAATAGAAAGAACATCCGCCACCGAGGCTCCACAGACGCCGCCGGAATCTGACCGGCCGCGCCGCTGTATTCCTGACGACATTCAAACTTACTTCGATTGTACTCAAGATCCCGGCGACATTGCCGAAGGCGACGACAGCATTTTTGGGTACCTAAATTCGTTTTTACCTTCATCAGTTTTTCACTGCGAACTCGATGCTTAA 1089 49.04 MAKISHPSHNNSISTIANPHSSPIRHSQKKVLKRTRKSAPRDAPAQRSSVYRGVTRHRWTGRYEAHLWDKNSWNEGQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGTETVLNFPILTYRDELKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAAAYDKAAIEYRGLNAVTNFDLSRYIKCLRPGEQDIPNNNNRPPNPNAGETTSEFDPNSLLGFTFPSQCSSSGQPATEPLSEPGDGDSSSSSAALELLLHSSKFKDIIERTSATEAPQTPPESDRPRRCIPDDIQTYFDCTQDPGDIAEGDDSIFGYLNSFLPSSVFHCELDA 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3199921 3206407 - CrPI670011_09g003280.1 Cre09g0328 506996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0328 362 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0328 362 PRINTS Ethylene responsive element binding protein signature 192 212 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0328 362 ProSiteProfiles AP2/ERF domain profile. 50 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0328 362 FunFam AP2-like ethylene-responsive transcription factor 151 212 - -
Cre09g0328 362 ProSiteProfiles AP2/ERF domain profile. 152 210 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0328 362 SMART rav1_2 50 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0328 362 SMART rav1_2 152 216 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0328 362 Gene3D AP2/ERF domain 50 118 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0328 362 Gene3D AP2/ERF domain 151 212 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0328 362 MobiDBLite consensus disorder prediction 1 51 - -
Cre09g0328 362 Pfam AP2 domain 151 202 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0328 362 Pfam AP2 domain 49 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0328 362 CDD AP2 151 212 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g0328 362 MobiDBLite consensus disorder prediction 299 318 - -
Cre09g0328 362 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 37 231 - -
Cre09g0328 362 MobiDBLite consensus disorder prediction 223 281 - -
Cre09g0328 362 FunFam AP2-like ethylene-responsive transcription factor 49 118 - -
Cre09g0328 362 MobiDBLite consensus disorder prediction 220 281 - -
Cre09g0328 362 MobiDBLite consensus disorder prediction 1 25 - -
Cre09g0328 362 SUPERFAMILY DNA-binding domain 151 212 IPR016177 GO:0003677(InterPro)
Cre09g0328 362 SUPERFAMILY DNA-binding domain 49 117 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2136 Cre-Chr6:29134044 Cre09g0328 Cre-Chr9:3199921 2.70E-88 dispersed
Cre09g0328 Cre-Chr9:3199921 Cre10g1625 Cre-Chr10:30335105 3.30E-75 dispersed
Cre09g0328 Cre-Chr9:3199921 Cre05g2383 Cre-Chr5:35373934 1.10E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54293 PF00847 AP2 2.40E-13 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0328 K09285 - csv:101206499 619.002