Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0338 ATGGCTGTTGAATCAAACCAAACTAACGAATTCATTTTCCGTTCAAAGCTTCCCCATATTCACATTCCCAATCATCTTCCACTCCACGAATACGTTTTCCAAAATCTCCCCAAATTTGCCTCACGCCCCTGTTTGATCAACGGCGCCACCGGCCATGTTTACTCCTACAGCGACCTTCACCTAACGGCCCGTCGAGTCGCCGCCGGCCTACACAACCTCGGAATTAAAAAGGGCGATGTCGTCATGAATTTGCTTCCCAACTCCCCGGAGTTCGTCTTCACCTTCCTCGCCGCGTCGTACCGGGGCGCCATCATGACCGCGGCCAACCCTTTTTACACGGCAGTGGAAATTGCAAAACAGGCCAAAGCCGCCAATGCGAAGTTGATCGTGACCATGGCTTGCTTTTACGATCGGGTTAAGGATTTGGCTGAAAATGGTGTCAAAATTGTATGCGTTGATTTTGCTGTCGAGGGTTGTTTGCATTTCTCTGTGTTGAGTGGGGCTGATGAATCTAATGCGCCGCCGGTGGATTTTTCCCCTGACGACGTGGTGGCGCTGCCGTACTCCTCCGGCACCACCGGTTTGCCGAAGGGAGTCATGTTAACTCATAAAGGGTTAATCACAAGCGTGGCTCAACAAATGGACGGCCAAAATCCGAACCTCTATTATCACGGCGATGATGTTATCCTCTGTGTGCTGCCGTTTTTCCACATTTATTCACTCAATTCCATTTTGCTGTGTGGGCTACGCGTCGGTGCTGCGATTGTGATTATGCAGAAATTTGACATCGTTTCTCTCTTGCAATTGATTGAGAAATACAGAATCTCGATCATGCCCATCGTCCCGCCGATCTTTTTGGCCATTGCTAAGTCGCCGGAATTTGAGAAATACGACGTGTCGTCAGTGAGGGTTCTCAAATCCGGTGGAGCTCCACTGGGGAAGGAGCTGGAAGACGCCGTGCGGGAGAAATTTCCAGCGGCGGTTCTCGGACAGGGGTATGGAATGACCGAGGCCGGTCCGGTTCTGAGCATGAGTTTAGCTTTTGCGAAAGAGCCGTTTGAAGTGAAAGCCGGAGCTTGTGGGACTGTGGTCCGAAATGCAGAGATGAAGATTGTCGACCCAGAAACCGGCGCGTCCTTGCCGGCGAATTCGGCCGGAGAGATTTGTATTAGAGGTGATCAGATCATGAAGGGTTATTTGAATGATTTGGAGTCAACAAAGAGGACTATTGATAAAGAAGGATGGCTTCACACCGGTGACATCGGCTTCGTGGACGACGACGATGAGATCTTCATTGTAGACCGGCTTAAGGAACTTATTAAATTTAAGGCCTTCCAAGTGGCGCCCGCCGAGCTGGAGGCCCTTCTTATCACCCACCCAAAACTATCCGACGCTGCTGTTATTGGTATGCCGGACGTGGAGGCCGGAGAAGTGCCGGTGGCGTTTGTGGTGAAGGCGAATGGCGGCGCAATATCAGAGGAAGAGGTAAAGCAATTCATAACAAAACAAGTGGTGTTCTACAAGAGGCTCAAACGTGTGTTTTTCGTCAACGCAATTCCAAAGGCTCCATCTGGAAAAATCCTTAGAAAAGAACTCAGAGCAAAACTGGCTTCTGGTGCTTACAATTAA 1629 50.03 MAVESNQTNEFIFRSKLPHIHIPNHLPLHEYVFQNLPKFASRPCLINGATGHVYSYSDLHLTARRVAAGLHNLGIKKGDVVMNLLPNSPEFVFTFLAASYRGAIMTAANPFYTAVEIAKQAKAANAKLIVTMACFYDRVKDLAENGVKIVCVDFAVEGCLHFSVLSGADESNAPPVDFSPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQMDGQNPNLYYHGDDVILCVLPFFHIYSLNSILLCGLRVGAAIVIMQKFDIVSLLQLIEKYRISIMPIVPPIFLAIAKSPEFEKYDVSSVRVLKSGGAPLGKELEDAVREKFPAAVLGQGYGMTEAGPVLSMSLAFAKEPFEVKAGACGTVVRNAEMKIVDPETGASLPANSAGEICIRGDQIMKGYLNDLESTKRTIDKEGWLHTGDIGFVDDDDEIFIVDRLKELIKFKAFQVAPAELEALLITHPKLSDAAVIGMPDVEAGEVPVAFVVKANGGAISEEEVKQFITKQVVFYKRLKRVFFVNAIPKAPSGKILRKELRAKLASGAYN 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3299700 3301443 + CrPI670011_09g003380.1 Cre09g0338 507006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0338 542 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Cre09g0338 542 CDD 4CL 22 532 - -
Cre09g0338 542 FunFam 4-coumarate--CoA ligase 2 438 539 - -
Cre09g0338 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 437 - -
Cre09g0338 542 Pfam AMP-binding enzyme 37 400 IPR000873 -
Cre09g0338 542 Gene3D - 437 538 IPR045851 -
Cre09g0338 542 SUPERFAMILY Acetyl-CoA synthetase-like 15 538 - -
Cre09g0338 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 533 - GO:0016405(PANTHER)
Cre09g0338 542 Gene3D - 3 436 IPR042099 -
Cre09g0338 542 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g2121 Cre-Chr4:38454729 Cre09g0338 Cre-Chr9:3299700 8.10E-24 dispersed
Cre09g0338 Cre-Chr9:3299700 Cre09g0340 Cre-Chr9:3316852 1.60E-291 dispersed
Cre09g0338 Cre-Chr9:3299700 Cre09g0339 Cre-Chr9:3306460 5.8e-310 tandem
Cre09g2077 Cre-Chr9:39839735 Cre09g0338 Cre-Chr9:3299700 4.80E-48 transposed
Cre10g1429 Cre-Chr10:27987157 Cre09g0338 Cre-Chr9:3299700 6.80E-226 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0338 K01904 - csv:101218121 989.949