Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0339 ATGGCTGTTGAATCAAACCAAACTAACGAATTCATTTTCCGTTCAAAGCTTCCCCATATTCACATTCCCAATCATCTCCCACTCCACGAATACGTTTTCCAAAATCTCCCCAAATTTGCCTCACGCCCCTGTTTGATCAACGGCGCCACCGGCCATGTTTACTCCTACAGCGACCTTCACCTAACGGCCCGTCGAGTCGCCGCCGGCCTACACAACCTCGGAATTAAAAAGGGCGATGTCGTCATGAATTTGCTTCCCAACTCCCCGGAGTTCGTCTTCACCTTCCTCGCCGCGTCGTACCGGGGCGCCATCATGACCGCGGCCAACCCTTTTTACACGGCAGTGGAAATTGCAAAACAGGCCAAAGCCGCCAATGCGAAGTTGATCGTGACCATGGCTTGCTTTTACGATCGGGTTAAGGATTTGGCTGAAAATGGTGTCAAAATTGTATGCGTTGATTTTGCTGTCGAGGGTTGTTTGCATTTCTCCGTGTTGAGTGGGGCTGATGAATCTAATGCGCCGCCGGTGGATTTTTCCCCTGACGACGTGGTGGCGCTGCCGTACTCCTCCGGCACCACCGGTTTGCCGAAGGGAGTCATGTTAACTCATAAAGGGTTAATCACAAGCGTGGCTCAACAAATGGACGGCCAAAATCCGAACCTCTATTATCACGGCGATGATGTTATCCTCTGTGTGCTGCCGTTTTTCCACATTTATTCACTCAATTCCATTTTGCTGTGTGGGCTACGCGTCGGTGCTGCGATTGTGATTATGCAGAAATTTGACATCGTTTCTCTCTTGCAATTGATTGAGAAATACAGAATCTCGATCATGCCCATCGTCCCGCCGATCTTTTTGGCCATTGCTAAGTCGCCGGAATTTGAGAAATACGACGTGTCGTCAGTGAGGGTTCTCAAATCCGGTGGAGCTCCACTGGGGAAGGAGCTGGAAGACGCCGTGCGGGAGAAATTTCCAGCGGCGGTTCTCGGACAGGGGTATGGAATGACCGAGGCCGGTCCGGTTCTGAGCATGAGTTTAGCTTTTGCGAAAGAGCCGTTTGAAGTGAAAGCCGGAGCTTGTGGGACTGTGGTCCGAAATGCAGAGATGAAGATTGTCGACCCAGAAACCGGCGCGTCCTTGCCGGCGAATTCGGCCGGAGAGATTTGTATTAGAGGTGATCAGATCATGAAGGGTTATTTGAATGATTTGGAGTCAACAAAGAGGACTATTGATAAAGAAGGATGGCTTCACACCGGTGACATCGGCTTCGTGGACGACGACGATGAGATCTTCATTGTAGACCGGCTTAAGGAACTTATTAAATTTAAGGCCTTCCAAGTGGCGCCCGCCGAGCTGGAGGCCCTTCTTATCACCCACCCAAAACTAAGTGACGCTGCCGTTATTGGTATGCCGGATGTGGAGGCAGGAGAAGTGCCAGTGGCGTTTGTGGTGAAGGCGAACGGTGGTGCTATAACAGAGGAAGATGTAAAGCAATTCATAACAAAACAAGTGGTGTTCTACAAGAGGCTAAAACGTGTGTTTTTTGTCAACGCTATTCCAAAGGCTCCGTCTGGCAAAATCCTCAGAAAAGAACTCAGAGCAAAATTGGCTTCTGCTGCTTACAATTAA 1629 49.85 MAVESNQTNEFIFRSKLPHIHIPNHLPLHEYVFQNLPKFASRPCLINGATGHVYSYSDLHLTARRVAAGLHNLGIKKGDVVMNLLPNSPEFVFTFLAASYRGAIMTAANPFYTAVEIAKQAKAANAKLIVTMACFYDRVKDLAENGVKIVCVDFAVEGCLHFSVLSGADESNAPPVDFSPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQMDGQNPNLYYHGDDVILCVLPFFHIYSLNSILLCGLRVGAAIVIMQKFDIVSLLQLIEKYRISIMPIVPPIFLAIAKSPEFEKYDVSSVRVLKSGGAPLGKELEDAVREKFPAAVLGQGYGMTEAGPVLSMSLAFAKEPFEVKAGACGTVVRNAEMKIVDPETGASLPANSAGEICIRGDQIMKGYLNDLESTKRTIDKEGWLHTGDIGFVDDDDEIFIVDRLKELIKFKAFQVAPAELEALLITHPKLSDAAVIGMPDVEAGEVPVAFVVKANGGAITEEDVKQFITKQVVFYKRLKRVFFVNAIPKAPSGKILRKELRAKLASAAYN 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3306460 3308197 + CrPI670011_09g003390.1 Cre09g0339 507007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0339 542 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Cre09g0339 542 CDD 4CL 22 532 - -
Cre09g0339 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 437 - -
Cre09g0339 542 FunFam 4-coumarate--CoA ligase 2 438 539 - -
Cre09g0339 542 Pfam AMP-binding enzyme 37 400 IPR000873 -
Cre09g0339 542 Gene3D - 437 539 IPR045851 -
Cre09g0339 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 533 - GO:0016405(PANTHER)
Cre09g0339 542 Gene3D - 3 436 IPR042099 -
Cre09g0339 542 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Cre09g0339 542 SUPERFAMILY Acetyl-CoA synthetase-like 15 538 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1083 Cre-Chr2:9145225 Cre09g0339 Cre-Chr9:3306460 4.30E-183 dispersed
Cre09g0339 Cre-Chr9:3306460 Cre10g1429 Cre-Chr10:27987157 2.00E-225 dispersed
Cre09g0338 Cre-Chr9:3299700 Cre09g0339 Cre-Chr9:3306460 5.8e-310 tandem
Cre09g0339 Cre-Chr9:3306460 Cre09g0340 Cre-Chr9:3316852 6.40E-293 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0339 K01904 - csv:101218121 988.023