Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0340 ATGGCCCTTGAATCAAAGCAAACTAATGAGTTCATTTTCCGTTCAAAGCTTCCCGATATTTACATTCCCAATCATCTTCCACTCCACGATTACGTTTTCCAAAATCTCCCAAAATTCGCCTCACGCCCCTGTTTGATCAACTCCGCCACCGGCGATGTTTACTCCTTCCACGACGTTCACCTAACGGCCCGTCGTGTCGCCGCCGGCTTACACAACCTCGGAATTAAAAAGGGCGATGTCGTCATGAATTTACTTCCCAACTCCCCTGAGTTCGTCTTCACCTTCCTCGGCGCGTCGTACCGAGGCGCCATCATGACGGCGGCGAACCCTTTTTACACGGCCGTGGAAATCGCCAAACAGGCCAAAGCCGCCAACGCGAAATTGATCGTGACGATGGCTTGCTTTTACGATCGGGTTAAGGATTTGGCTGAAAATAGTGTCAAAATTGTATGCGTTGATTTTGCTGTTGAGGGTTGTTTGCATTTCTCTGTGTTGAGTGGGGCTGATGAATCTCACGCGCCGCCGGTGGATTTTTCCCCCGACGACGTGGTGGCGCTGCCGTACTCCTCCGGCACCACCGGTTTGCCGAAGGGTGTTATGTTAACTCATAAAGGGTTAATCACAAGCGTGGCTCAACAAATGGACGGCCAAAATCCAAACCTCTACTATCATCGCGATGACGTCATCCTCTGTGTGCTGCCGTTTTTCCACATCTATTCACTCAATTCCATTTTGCTGTGCGGGCTACGCGCCGGTGCTGCGATTATGATTATGCAGAAATTTGAGATAATTTCACTTTTACAATTGATTGAGAAATACAAAATTTCGATCATGCCCATCGTGCCGCCGATCTTACTGGCCATTGCTAAGTCGTCAGAATTTGAGAAATACGACGTGTCGTCCGTGAGGGTTCTAAAATCCGGCGGAGCGCCACTGGGGAAGGAGTTGGAAGACGCCGTGAGGGCGAAATTTCCGGCGGCGATTCTTGGGCAAGGGTACGGAATGACCGAGGCCGGTCCGGTTCTGTCAATGAGTTTGGCTTTTGCGAAAGAGCCGTTTCAAGTGAAAGCCGGAGCATGTGGAACTGTGGTTCGAAATGCAGAGATGAAGATTGTTGACCCGGAAACCGGCGCGTCCTTGCCGGCGAATTCGGCCGGAGAGATTTGTATTAGGGGTGATCAAATCATGAAGGGATATTTGAATGATTTGGAGTCTACGAAGAGAACAATTGATAAAGAAGGATGGCTTCACACCGGCGACATGGGCTACATCGACGACGACGACGAGCTCTTCATCGTGGACCGGCTTAAGGAACTTATCAAATTCAAGGCATTTCAAGTGGCGCCTGCGGAGGTGGAGGCCCTTCTTATCAGTCATCCTAAACTCTGTGACGCTGCGGTTATTGGGATGCCGGACGTGGAGGCGGGAGAAGTGCCGGTGGCATTTGTTGTGAAGGAGAACAGTGACACAATAACGGAAGAAGATGTAAAGCAATTCATAACAAAACAAGTGGTGTTCTACAAGAGGCTAAAACGTGTGTTTTTTGTCAACGCTATTCCGAAGGCGCCATCTGGCAAAATCCTTAGAAAAGAACTTAGGGCAAAACTTGCTTCTGCTGCTTACAATTAA 1629 49.36 MALESKQTNEFIFRSKLPDIYIPNHLPLHDYVFQNLPKFASRPCLINSATGDVYSFHDVHLTARRVAAGLHNLGIKKGDVVMNLLPNSPEFVFTFLGASYRGAIMTAANPFYTAVEIAKQAKAANAKLIVTMACFYDRVKDLAENSVKIVCVDFAVEGCLHFSVLSGADESHAPPVDFSPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQMDGQNPNLYYHRDDVILCVLPFFHIYSLNSILLCGLRAGAAIMIMQKFEIISLLQLIEKYKISIMPIVPPILLAIAKSSEFEKYDVSSVRVLKSGGAPLGKELEDAVRAKFPAAILGQGYGMTEAGPVLSMSLAFAKEPFQVKAGACGTVVRNAEMKIVDPETGASLPANSAGEICIRGDQIMKGYLNDLESTKRTIDKEGWLHTGDMGYIDDDDELFIVDRLKELIKFKAFQVAPAEVEALLISHPKLCDAAVIGMPDVEAGEVPVAFVVKENSDTITEEDVKQFITKQVVFYKRLKRVFFVNAIPKAPSGKILRKELRAKLASAAYN 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3316852 3318480 + CrPI670011_09g003400.1 Cre09g0340 507008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0340 542 SUPERFAMILY Acetyl-CoA synthetase-like 10 538 - -
Cre09g0340 542 CDD 4CL 22 532 - -
Cre09g0340 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 533 - GO:0016405(PANTHER)
Cre09g0340 542 Gene3D - 6 436 IPR042099 -
Cre09g0340 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 437 - -
Cre09g0340 542 Gene3D - 437 539 IPR045851 -
Cre09g0340 542 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Cre09g0340 542 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Cre09g0340 542 Pfam AMP-binding enzyme 37 400 IPR000873 -
Cre09g0340 542 FunFam 4-coumarate--CoA ligase 2 438 539 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g0338 Cre-Chr9:3299700 Cre09g0340 Cre-Chr9:3316852 1.60E-291 dispersed
Cre09g0340 Cre-Chr9:3316852 Cre10g1429 Cre-Chr10:27987157 1.30E-224 dispersed
Cre09g0339 Cre-Chr9:3306460 Cre09g0340 Cre-Chr9:3316852 6.40E-293 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0340 K01904 - csv:101218361 990.334