Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre09g0360 | ATGGAGCTTGGCCTGAGCTTGGGCGACGCCCCCAAGCCCTTCCGCTTCGTCGAGAAGCAACCGCAAGTACAGCCGCCACAGCGAGTTCTTTCCCGGCCAGATTTAGGGTTCTGTGTCGACTTGTCGATTGGCCGTCCGGTTGTCGGAGAGAAAGAAGACGACGAAGAAAAACCTAATCAGAGAGAAGATGAATCCGACGGTAATGAAGATCCACCGATTCAACTCGATCTTCTCCCTCATAATCCCGTTCCTCGAAACCTAACTAATCCGTACCAAGGATTCCCATGGCCGTCGTCCGAAAACGATGAAGGCGAAGACCGAACCGCATCGCCGAACAGCGCAGCGTCGTCGTTTCAGATGGAATTTGGACTGTACGGTGGCGGAGGAAACATTTCCTGCCGGAGAGATCAAATTGAAAATGGCGTAATGAACGAAGTAGGTGAATCTGGAAGAGCGTCTTCTAGAGCTAGCGATGAAGACGAAAATGGCTGTACGAGGAAGAAACTCAGACTCTCTAAAGAACAATCCGCTTTCCTTGAAGAAAGCTTCAAAGAACACAACACTTTAAACCCTAAACAGAAGCTAGCACTGGCTAAGCAACTGAATCTTCTTCCTCGCCAAGTGGAAGTTTGGTTCCAAAACAGAAGGGCTAGGACGAAATTGAAGCAAACGGAAGTGGATTGCGAGTATTTGAAAAGATGTTGTGAGACATTAACAGAAGAGAACAGACGGCTTCAAAAGGAGCTTCAAGAATTAAGAGCTTTGAAAACAACGAACTCATTCTACATGCAATTACCAGCCACAACACTCACCATGTGTCCTTCTTGTGAAAGAGTAACCTCAACTTCCGCCGCTTCCACCGTCGCTGCCGTCGCCACCAGTGGAGGCAAATCGACGGAGGGAGTTTCAAAACGATCTGGGTTCGCCATTGCTGGCCGACCCAGTTCTTCCTCTTTCCCATTTTCTGCTAAAACGCAGTCCCACCAGTCAACAGCTTCATGA | 1002 | 48.9 | MELGLSLGDAPKPFRFVEKQPQVQPPQRVLSRPDLGFCVDLSIGRPVVGEKEDDEEKPNQREDESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQMEFGLYGGGGNISCRRDQIENGVMNEVGESGRASSRASDEDENGCTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLLPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSFYMQLPATTLTMCPSCERVTSTSAASTVAAVATSGGKSTEGVSKRSGFAIAGRPSSSSFPFSAKTQSHQSTAS | 333 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3557224 | 3558469 | + | CrPI670011_09g003600.1 | Cre09g0360 | 507028 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre09g0360 | 333 | SMART | halz | 222 | 265 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre09g0360 | 333 | ProSiteProfiles | 'Homeobox' domain profile. | 162 | 222 | IPR001356 | GO:0003677(InterPro) | |
Cre09g0360 | 333 | Gene3D | - | 170 | 220 | - | - | |
Cre09g0360 | 333 | MobiDBLite | consensus disorder prediction | 292 | 333 | - | - | |
Cre09g0360 | 333 | CDD | homeodomain | 166 | 223 | IPR001356 | GO:0003677(InterPro) | |
Cre09g0360 | 333 | SUPERFAMILY | Homeodomain-like | 159 | 223 | IPR009057 | - | |
Cre09g0360 | 333 | ProSitePatterns | 'Homeobox' domain signature. | 197 | 220 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cre09g0360 | 333 | Pfam | Homeobox associated leucine zipper | 222 | 256 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre09g0360 | 333 | SMART | HOX_1 | 164 | 226 | IPR001356 | GO:0003677(InterPro) | |
Cre09g0360 | 333 | MobiDBLite | consensus disorder prediction | 1 | 113 | - | - | |
Cre09g0360 | 333 | MobiDBLite | consensus disorder prediction | 46 | 68 | - | - | |
Cre09g0360 | 333 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 55 | 290 | IPR050762 | - | |
Cre09g0360 | 333 | MobiDBLite | consensus disorder prediction | 310 | 333 | - | - | |
Cre09g0360 | 333 | FunFam | Homeobox-leucine zipper protein HAT22 | 170 | 216 | - | - | |
Cre09g0360 | 333 | Coils | Coil | 228 | 258 | - | - | |
Cre09g0360 | 333 | Pfam | Homeodomain | 166 | 220 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre09g0360 | Cre-Chr9:3557224 | Cre10g2062 | Cre-Chr10:35320509 | 7.30E-13 | dispersed | |
Cre04g1411 | Cre-Chr4:32939901 | Cre09g0360 | Cre-Chr9:3557224 | 1.10E-53 | transposed | |
Cre05g0107 | Cre-Chr5:1285485 | Cre09g0360 | Cre-Chr9:3557224 | 9.60E-49 | transposed | |
Cre05g1931 | Cre-Chr5:31485539 | Cre09g0360 | Cre-Chr9:3557224 | 3.00E-41 | transposed | |
Cre06g2259 | Cre-Chr6:30499626 | Cre09g0360 | Cre-Chr9:3557224 | 5.20E-41 | transposed | |
Cre07g1034 | Cre-Chr7:14345655 | Cre09g0360 | Cre-Chr9:3557224 | 1.20E-34 | transposed | |
Cre09g1922 | Cre-Chr9:37998431 | Cre09g0360 | Cre-Chr9:3557224 | 4.80E-35 | transposed | |
Cre10g0495 | Cre-Chr10:4074247 | Cre09g0360 | Cre-Chr9:3557224 | 1.50E-51 | transposed | |
Cre10g0999 | Cre-Chr10:17069352 | Cre09g0360 | Cre-Chr9:3557224 | 3.30E-51 | transposed | |
Cre10g1878 | Cre-Chr10:33370003 | Cre09g0360 | Cre-Chr9:3557224 | 2.70E-66 | transposed | |
Cre10g1417 | Cre-Chr10:27881835 | Cre09g0360 | Cre-Chr9:3557224 | 1.90E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54295 | PF00046 | Homeodomain | 4.90E-15 | CL0123 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre09g0360 | K09338 | - | csv:101221600 | 578.941 |