Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0360 ATGGAGCTTGGCCTGAGCTTGGGCGACGCCCCCAAGCCCTTCCGCTTCGTCGAGAAGCAACCGCAAGTACAGCCGCCACAGCGAGTTCTTTCCCGGCCAGATTTAGGGTTCTGTGTCGACTTGTCGATTGGCCGTCCGGTTGTCGGAGAGAAAGAAGACGACGAAGAAAAACCTAATCAGAGAGAAGATGAATCCGACGGTAATGAAGATCCACCGATTCAACTCGATCTTCTCCCTCATAATCCCGTTCCTCGAAACCTAACTAATCCGTACCAAGGATTCCCATGGCCGTCGTCCGAAAACGATGAAGGCGAAGACCGAACCGCATCGCCGAACAGCGCAGCGTCGTCGTTTCAGATGGAATTTGGACTGTACGGTGGCGGAGGAAACATTTCCTGCCGGAGAGATCAAATTGAAAATGGCGTAATGAACGAAGTAGGTGAATCTGGAAGAGCGTCTTCTAGAGCTAGCGATGAAGACGAAAATGGCTGTACGAGGAAGAAACTCAGACTCTCTAAAGAACAATCCGCTTTCCTTGAAGAAAGCTTCAAAGAACACAACACTTTAAACCCTAAACAGAAGCTAGCACTGGCTAAGCAACTGAATCTTCTTCCTCGCCAAGTGGAAGTTTGGTTCCAAAACAGAAGGGCTAGGACGAAATTGAAGCAAACGGAAGTGGATTGCGAGTATTTGAAAAGATGTTGTGAGACATTAACAGAAGAGAACAGACGGCTTCAAAAGGAGCTTCAAGAATTAAGAGCTTTGAAAACAACGAACTCATTCTACATGCAATTACCAGCCACAACACTCACCATGTGTCCTTCTTGTGAAAGAGTAACCTCAACTTCCGCCGCTTCCACCGTCGCTGCCGTCGCCACCAGTGGAGGCAAATCGACGGAGGGAGTTTCAAAACGATCTGGGTTCGCCATTGCTGGCCGACCCAGTTCTTCCTCTTTCCCATTTTCTGCTAAAACGCAGTCCCACCAGTCAACAGCTTCATGA 1002 48.9 MELGLSLGDAPKPFRFVEKQPQVQPPQRVLSRPDLGFCVDLSIGRPVVGEKEDDEEKPNQREDESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQMEFGLYGGGGNISCRRDQIENGVMNEVGESGRASSRASDEDENGCTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLLPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSFYMQLPATTLTMCPSCERVTSTSAASTVAAVATSGGKSTEGVSKRSGFAIAGRPSSSSFPFSAKTQSHQSTAS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3557224 3558469 + CrPI670011_09g003600.1 Cre09g0360 507028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0360 333 SMART halz 222 265 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre09g0360 333 ProSiteProfiles 'Homeobox' domain profile. 162 222 IPR001356 GO:0003677(InterPro)
Cre09g0360 333 Gene3D - 170 220 - -
Cre09g0360 333 MobiDBLite consensus disorder prediction 292 333 - -
Cre09g0360 333 CDD homeodomain 166 223 IPR001356 GO:0003677(InterPro)
Cre09g0360 333 SUPERFAMILY Homeodomain-like 159 223 IPR009057 -
Cre09g0360 333 ProSitePatterns 'Homeobox' domain signature. 197 220 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre09g0360 333 Pfam Homeobox associated leucine zipper 222 256 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre09g0360 333 SMART HOX_1 164 226 IPR001356 GO:0003677(InterPro)
Cre09g0360 333 MobiDBLite consensus disorder prediction 1 113 - -
Cre09g0360 333 MobiDBLite consensus disorder prediction 46 68 - -
Cre09g0360 333 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 55 290 IPR050762 -
Cre09g0360 333 MobiDBLite consensus disorder prediction 310 333 - -
Cre09g0360 333 FunFam Homeobox-leucine zipper protein HAT22 170 216 - -
Cre09g0360 333 Coils Coil 228 258 - -
Cre09g0360 333 Pfam Homeodomain 166 220 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g0360 Cre-Chr9:3557224 Cre10g2062 Cre-Chr10:35320509 7.30E-13 dispersed
Cre04g1411 Cre-Chr4:32939901 Cre09g0360 Cre-Chr9:3557224 1.10E-53 transposed
Cre05g0107 Cre-Chr5:1285485 Cre09g0360 Cre-Chr9:3557224 9.60E-49 transposed
Cre05g1931 Cre-Chr5:31485539 Cre09g0360 Cre-Chr9:3557224 3.00E-41 transposed
Cre06g2259 Cre-Chr6:30499626 Cre09g0360 Cre-Chr9:3557224 5.20E-41 transposed
Cre07g1034 Cre-Chr7:14345655 Cre09g0360 Cre-Chr9:3557224 1.20E-34 transposed
Cre09g1922 Cre-Chr9:37998431 Cre09g0360 Cre-Chr9:3557224 4.80E-35 transposed
Cre10g0495 Cre-Chr10:4074247 Cre09g0360 Cre-Chr9:3557224 1.50E-51 transposed
Cre10g0999 Cre-Chr10:17069352 Cre09g0360 Cre-Chr9:3557224 3.30E-51 transposed
Cre10g1878 Cre-Chr10:33370003 Cre09g0360 Cre-Chr9:3557224 2.70E-66 transposed
Cre10g1417 Cre-Chr10:27881835 Cre09g0360 Cre-Chr9:3557224 1.90E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54295 PF00046 Homeodomain 4.90E-15 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0360 K09338 - csv:101221600 578.941