Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0397 ATGGCTATGGCTGGGCGTATGAGATCGATCATTCCTCAATTCAATCAGCTTCTGAAATCGGAGTCACTCACTCAGAGACCTGCTCTTCTAAGAGCCCTACTTTGCCCCACGACTCCCAACTCCGAGGTCTCGAGGAACTATGCAACTGCTTCCAAGAAAAGAGAGGAAAAAGTTAAAGTTCCCCTGGTTTTGTTTGGGGGTTCTGGAAACTATGCCTCTGCTTTGTACCTTGCAGCAGTAAAAGCTAATTCCTTGGATAAGGTTGAGAGAGAGCTTCTTGACCTTGTCGAGGCTTCACAGAGAAGTGCCACCTTCTCTCAGTTCACAAGAGATCCCTCAGTGTGTAAAGATACTAGGGTCAAGGCTATTGAGGATATTTGTGCTTCAGCTAAATTTTCAGAAATTGTAAAAAACTTTTTGGTTATATTGGCTGAGTATGGAAGGCTGAAATACATAGACAGCATTGCAAAGAGGTTTCTAGAGTTGACAATGGCTCATCGAGGAGAGGTGAAAGCCATTGTGACTACAGTTATTCCCCTCCCTCCTGAAGAAGAGAAAGAATTAAAGGAGACCCTGCAGGATATTATTGGACAAGGGAAAAGGGTCAAGCTTGAACAGAAGATTGATCCAAGTATTCTCGGCGGACTAGTTGTAGAATTCGGCGAGAAAGTGTTCGACATGTCAATTAAGACCAGAGCACGACAGATGGAGAGGTTCTTGCGAGAACCTGCAAACCTCAACAGCCTCTGA 750 44.67 MAMAGRMRSIIPQFNQLLKSESLTQRPALLRALLCPTTPNSEVSRNYATASKKREEKVKVPLVLFGGSGNYASALYLAAVKANSLDKVERELLDLVEASQRSATFSQFTRDPSVCKDTRVKAIEDICASAKFSEIVKNFLVILAEYGRLKYIDSIAKRFLELTMAHRGEVKAIVTTVIPLPPEEEKELKETLQDIIGQGKRVKLEQKIDPSILGGLVVEFGEKVFDMSIKTRARQMERFLREPANLNSL 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3905772 3909541 - CrPI670011_09g003970.1 Cre09g0397 507065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0397 249 Pfam ATP synthase delta (OSCP) subunit 69 238 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cre09g0397 249 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 202 221 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
Cre09g0397 249 PANTHER ATP SYNTHASE DELTA CHAIN 1 243 IPR000711 GO:0000274(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0042776(PANTHER)|GO:0045261(PANTHER)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Cre09g0397 249 Gene3D - 67 160 IPR026015 -
Cre09g0397 249 NCBIfam ATP synthase F1 subunit delta 70 239 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cre09g0397 249 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 68 169 IPR026015 -
Cre09g0397 249 Hamap ATP synthase subunit delta [atpD]. 63 242 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cre09g0397 249 PRINTS ATP synthase delta subunit signature 148 162 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cre09g0397 249 PRINTS ATP synthase delta subunit signature 137 148 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cre09g0397 249 PRINTS ATP synthase delta subunit signature 200 215 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cre09g0397 249 PRINTS ATP synthase delta subunit signature 215 233 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cre09g0397 249 PRINTS ATP synthase delta subunit signature 67 86 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0235 Cre-Chr8:6062838 Cre09g0397 Cre-Chr9:3905772 1.50E-07 dispersed
Cre10g1390 Cre-Chr10:27606565 Cre09g0397 Cre-Chr9:3905772 1.20E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0397 K02137 - csv:101206351 394.045