Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0400 ATGACAGACCCAAATTACTCAAATTCCTTCAACTTCATCCCTCTTCCTTCTTATCTTCCTCCTTCAAATTTCCCCTTTTCCCAATGCCGCCACCCTCTTCCTCCTCCTCCTCCGCCGTCTTCGCCGCCGCAAGCACTCCCTCTCCTCAACACCCTTTCGCCGGAAACCGCCGATCATCCCTCCTCCTCCACCACCACTTGCAGTTTCGATGACGAATCTGCCGCTCTTGCTCTTGACTTCAGCCTCTCTTGCCCTAGCTCCGATCTAGACTCCTCCTCTCATTCCTTCTCGCCGGACCCTGGCACCGGGAAAATCCTCGATGGTGACATATCCGACCACCCTTTGCCGATCTCCGGCAAGGGTCAGTTCTGGATTCCCACCCCATCTCAGATCCTCATCGGCCCTACTCAGTTCTCTTGCCCTCTTTGCTCTAAAGCCTTCAATAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCGCAATACAGGAAAGGCCCAGAATCACTCAAAGGAACACAACCAACCGCAATGCTAAGGCTCCCATGCTATTGCTGCGCGGCTGGCTGCAAACACAACATCGACAACCCACGGTCGCGGCCGCTCAAGGATTTCCGCACCCTTCAAACGCATTACAAGCGCAAGCACGGCATCAAGCCCTTCACTTGTAGAAAATGCACCAAAGCCTTCGCTGTCAAAGGCGATTGGCGAACCCACGAGAAGAATTGCGGCAAGATTTGGTATTGCTTTTGTGGTTCTGACTTCAAACACAAACGCTCCCTTAAAGACCATATCAAGGCCTTTGGTCACGGGCATGGCGCCCTCGGTCTTGACTACTTTGATGACGACAATGAACCCTCTCCTGAACTCCAACACCAATCACAACACGGCCTCTTCCTCCATCTTCATTAA 915 52.24 MTDPNYSNSFNFIPLPSYLPPSNFPFSQCRHPLPPPPPPSSPPQALPLLNTLSPETADHPSSSTTTCSFDDESAALALDFSLSCPSSDLDSSSHSFSPDPGTGKILDGDISDHPLPISGKGQFWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCAAGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCTKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGHGHGALGLDYFDDDNEPSPELQHQSQHGLFLHLH 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3942788 3946051 + CrPI670011_09g004000.1 Cre09g0400 507068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0400 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 165 IPR013087 -
Cre09g0400 304 PANTHER ZINC FINGER PROTEIN WIP2 119 296 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Cre09g0400 304 SUPERFAMILY beta-beta-alpha zinc fingers 205 242 IPR036236 -
Cre09g0400 304 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
Cre09g0400 304 Gene3D Classic Zinc Finger 137 160 - -
Cre09g0400 304 MobiDBLite consensus disorder prediction 46 68 - -
Cre09g0400 304 SMART c2h2final6 222 242 IPR013087 -
Cre09g0400 304 SMART c2h2final6 138 160 IPR013087 -
Cre09g0400 304 SMART c2h2final6 248 271 IPR013087 -
Cre09g0400 304 MobiDBLite consensus disorder prediction 27 45 - -
Cre09g0400 304 MobiDBLite consensus disorder prediction 26 68 - -
Cre09g0400 304 FunFam Zinc finger protein WIP2 191 273 - -
Cre09g0400 304 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 221 245 - -
Cre09g0400 304 SUPERFAMILY beta-beta-alpha zinc fingers 131 160 IPR036236 -
Cre09g0400 304 Gene3D Classic Zinc Finger 201 273 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g0400 Cre-Chr9:3942788 Cre10g1839 Cre-Chr10:32963284 1.10E-87 dispersed
Cre02g2631 Cre-Chr2:39577417 Cre09g0400 Cre-Chr9:3942788 2.20E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54299 PF00096 zf-C2H2 0.0016 CL0361 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0400 - - - 0.0