Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre09g0400 | ATGACAGACCCAAATTACTCAAATTCCTTCAACTTCATCCCTCTTCCTTCTTATCTTCCTCCTTCAAATTTCCCCTTTTCCCAATGCCGCCACCCTCTTCCTCCTCCTCCTCCGCCGTCTTCGCCGCCGCAAGCACTCCCTCTCCTCAACACCCTTTCGCCGGAAACCGCCGATCATCCCTCCTCCTCCACCACCACTTGCAGTTTCGATGACGAATCTGCCGCTCTTGCTCTTGACTTCAGCCTCTCTTGCCCTAGCTCCGATCTAGACTCCTCCTCTCATTCCTTCTCGCCGGACCCTGGCACCGGGAAAATCCTCGATGGTGACATATCCGACCACCCTTTGCCGATCTCCGGCAAGGGTCAGTTCTGGATTCCCACCCCATCTCAGATCCTCATCGGCCCTACTCAGTTCTCTTGCCCTCTTTGCTCTAAAGCCTTCAATAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCGCAATACAGGAAAGGCCCAGAATCACTCAAAGGAACACAACCAACCGCAATGCTAAGGCTCCCATGCTATTGCTGCGCGGCTGGCTGCAAACACAACATCGACAACCCACGGTCGCGGCCGCTCAAGGATTTCCGCACCCTTCAAACGCATTACAAGCGCAAGCACGGCATCAAGCCCTTCACTTGTAGAAAATGCACCAAAGCCTTCGCTGTCAAAGGCGATTGGCGAACCCACGAGAAGAATTGCGGCAAGATTTGGTATTGCTTTTGTGGTTCTGACTTCAAACACAAACGCTCCCTTAAAGACCATATCAAGGCCTTTGGTCACGGGCATGGCGCCCTCGGTCTTGACTACTTTGATGACGACAATGAACCCTCTCCTGAACTCCAACACCAATCACAACACGGCCTCTTCCTCCATCTTCATTAA | 915 | 52.24 | MTDPNYSNSFNFIPLPSYLPPSNFPFSQCRHPLPPPPPPSSPPQALPLLNTLSPETADHPSSSTTTCSFDDESAALALDFSLSCPSSDLDSSSHSFSPDPGTGKILDGDISDHPLPISGKGQFWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCAAGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCTKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGHGHGALGLDYFDDDNEPSPELQHQSQHGLFLHLH | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3942788 | 3946051 | + | CrPI670011_09g004000.1 | Cre09g0400 | 507068 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre09g0400 | 304 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 138 | 165 | IPR013087 | - | |
Cre09g0400 | 304 | PANTHER | ZINC FINGER PROTEIN WIP2 | 119 | 296 | IPR043584 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER) | |
Cre09g0400 | 304 | SUPERFAMILY | beta-beta-alpha zinc fingers | 205 | 242 | IPR036236 | - | |
Cre09g0400 | 304 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 140 | 160 | IPR013087 | - | |
Cre09g0400 | 304 | Gene3D | Classic Zinc Finger | 137 | 160 | - | - | |
Cre09g0400 | 304 | MobiDBLite | consensus disorder prediction | 46 | 68 | - | - | |
Cre09g0400 | 304 | SMART | c2h2final6 | 222 | 242 | IPR013087 | - | |
Cre09g0400 | 304 | SMART | c2h2final6 | 138 | 160 | IPR013087 | - | |
Cre09g0400 | 304 | SMART | c2h2final6 | 248 | 271 | IPR013087 | - | |
Cre09g0400 | 304 | MobiDBLite | consensus disorder prediction | 27 | 45 | - | - | |
Cre09g0400 | 304 | MobiDBLite | consensus disorder prediction | 26 | 68 | - | - | |
Cre09g0400 | 304 | FunFam | Zinc finger protein WIP2 | 191 | 273 | - | - | |
Cre09g0400 | 304 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 221 | 245 | - | - | |
Cre09g0400 | 304 | SUPERFAMILY | beta-beta-alpha zinc fingers | 131 | 160 | IPR036236 | - | |
Cre09g0400 | 304 | Gene3D | Classic Zinc Finger | 201 | 273 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre09g0400 | Cre-Chr9:3942788 | Cre10g1839 | Cre-Chr10:32963284 | 1.10E-87 | dispersed | |
Cre02g2631 | Cre-Chr2:39577417 | Cre09g0400 | Cre-Chr9:3942788 | 2.20E-92 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54299 | PF00096 | zf-C2H2 | 0.0016 | CL0361 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre09g0400 | - | - | - | 0.0 |