Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0421 ATGGCGGAATCCCAGCATCGCGCTAAGCGCCCTAGAATTACGAGGGGGGAAGATGATTATATGCCTGGAAGTATTATTGAGATTGAGCTTCATAACTTTATGACCTTTAACCACTTGAAATGTAAACCAGGGTCACGTCTAAACCTTGTAATTGGGCCTAACGGATCTGGTAAAAGCTCTATTGTATGTGCTATTGCCCTTGGCCTTGGTGGTGAGCCTCAGCTCCTTGGAAGGGCAACCAGTGTTGGAGCATATGTGAAGCGTGGGGAGGAGTCTGGTTATGTTAGAATAACCTTGAGAGGGAATACTAAAGAGGAAAAGATTACAATTACACGGAAAATGGACACACATAACAAATCTGAGTGGTTGTTCAACGGAAAAGTTGTGCCAAAAAAAGATGTAGCTGGAATTATTCAAAGGTTTAACATTCAAGTTAATAATTTGACTCAATTTTTACCTCAGGACAGGGTTTGTGAGTTTGCCAAATTAACTCCTGTGCAACTTTTAGAAGAGACTGAAAAGGCAGTTGGTGATCCTCAACTTCCTATCCTACATCGTGCACTTGTTGATAAAAGCCATGGCATAAAAAGTATAGAAAGAGCTGTTGAGAAAAATGGTGACACCCTAGATCAGTTGAAGGCATTAAATGTCGAGCAAGAGAAAGATGTTGAGCGTGTTCGTCAAAGAGATGAACTTTTAAAAAAGGTTGAGTCCATGAAGAAGAAACTGCCATGGCTAAAGTATGACATGAAAAAGGCTGAATACATGGAAGTTAAGGAAAAGGAAAAGGAGGCCAAAAAAAAGTTAGATGAAGCTGCTAACACTTTGAATGAACTAAAGGAGCCAATTGAGAAACAAAAAATGGAGAAGGCAAAGTTGGATGCTAAAACTAAAAAGTATAGCACTCTTATTAATGGTAATCACAAGAAAAGGATGGAACTTCAGGAAACTGAAAACCATTTGGGGGTGCAAGTGCAAGGAAAATTGAAAGAAATGGAAGACTTGAGGAAACAAGAAGAATCTCGTCAACAGAGAATCTTGCGAGCTAAAGAGGAACTTGAAGCTGCTGAATTCGAACTTCAGAATTTGCCTCCTTACGAACATCCCAAGGATGAGATTGAACGGTTGCGTGCTCAAATTTTGGAGCTGGAAGTTTCTGCAAGTCAGAAGAGACTTATGAAGTCAGAGATTGAGAAAAATATTTCCCAAAAAAGAAATACTTTGAGGCAATGCTTGGATAGGTTAAAGGATATGGAGAATACTAATACAAAACTACTACAGGCATTGAGAAATTCTGGAACAGAGAAGATTTTTGAAGCTTATCACTGGCTTCAAGAACATCGCCATGAGTTCAAGAAGGAGGTTTATGGTCCAGTGTTGCTAGAGGTTAATGTGTCAAATCGGATTCATGCTGACTACTTAGAAGGTCATATTCCATCCTATGTCTGGAAGTCCTTCATAACCCAAGATTCTGAAGATCGTGACATTATGGTAAAAAATTTGGGCTCATTCGGCGTTCCTGTCTTAAACTATGTGGGAGGTGAAAGGCGCACAAATCAGCATTTTGAGTTATCTGAAGAGGTTCGTGCATTTGGCATATATTCTCGGCTAGACCAAATTTTTGAGGCTCCTGCAGCTGTAAAGGAGGTTTTGACCATGCAGTTTGGTTTGGAACATTCATTTATTGGTTCAAAGGTAACTGATCAAAAGGCAGACGAGGTCTCAAAATTGGGAATTTTAGATTTTTGGACTCCAGATAATCATTATCGATGGTCTCGCTCTAGATACGGTGGTCATATGTCCGGAAGTGTGGAACCAGTTGATCGCTCACGTCTTCTTTTGTGCAACTTGGATGCGGGAGAAATTGATGGGCTTCGCTCCAGGAAAAATGAGCTAGAACAATCTGTTTCTGCCTTGGAAGAAAATTGTAAATCATGTCAGAATGAGCTAAGATTGATAGAGGATGAAGAAGCTAAACTTCGCAAACATCGGGATGACATTTTAAATACTGTGCAACATGAGAAGAGAAAACGACGTGAAATGGAAAATCGCATTGATCAAAGGAAAAAGAAATTAGAATCTATGGAGCGGGAAGATGACCTGGATACTGTTGTGGCCAAGCTTGTCGACCAAGCTGCAAATTTTAACATTCAAAGATTCCATTGTGTAATTGAAATTAAGCATTTGCTTCTTGAAGCCGTTTCCTATAGACAGGGCTTGACTAAGAACCACATGGCCTCCATTGAAATTGAAGCAAAGATCAGAGAATTGGAGGTAAATCTGAAGCAGCATGAAAAGGTTGCTCTGCAAGCGTCAGTGCAGTTCGAGTACTGCAAGAAGGAAGTTGAGGACTATCGACAGCAACTTTCAGCTGCCAAGAAGTTTGCAGAATCTATTGCTGAGATCACACCTGACCTTGAGAAGGAATTTCTTGAGATGCCCACTACAATTGAGGAATTGGAGGCCGCTATTCAAGATAATGTTTCTCAAGCTAATTCCATTCTATTCTTAAACCATAACGTGCTTGAGGAATATGAACATCGTCAGAATCAGATAAACACCATTGCACGGAAACTAGAAGCTGATAAACATGAACTAAGGAAGTGTATGGCTGAAGTTGAAGAGCTGAAGGCAAATTGGCTCCCAACATTAAGAAGACTTGTTTCTCAGATAAATGAAAGTTTTAGTCGCAATTTTCAAGAGATGGCTGTTGCTGGAGAAGTGTTATTGGATGAACATGATATGGACTTTGATCAATTTGGAATATTAATTAAAGTGAAGTTCAGACAAGCAGGTCAGCTTCAGGTTCTCAGTGCACATCATCAATCTGGAGGGGAACGCTCAGTGTCGACAATTCTGTATCTTGTTTCCCTTCAAGACCTTACCAACTGCCCATTTAGAGTAGTTGACGAGATAAACCAAGGAATGGATCCCATAAATGAACGGAAGATGTTCCAGCAATTGGTGAGAGCTGCCAGCCAAACCAATACCCCACAGTGTTTCCTACTGACTCCAAAGTTACTTCCAGAACTGGAATATAGTGAGGCCTGTAGTATACTGAATATAATGAATGGTCCTTGGATCGAGCAGCCCTCGAGAGCATGGAGCAATGGAGATAGCTGGGGAACGTTGATGAACTATGTAGGAGAAAGCCGATGTTGA 3162 40.61 MAESQHRAKRPRITRGEDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEEKITITRKMDTHNKSEWLFNGKVVPKKDVAGIIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHRALVDKSHGIKSIERAVEKNGDTLDQLKALNVEQEKDVERVRQRDELLKKVESMKKKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNELKEPIEKQKMEKAKLDAKTKKYSTLINGNHKKRMELQETENHLGVQVQGKLKEMEDLRKQEESRQQRILRAKEELEAAEFELQNLPPYEHPKDEIERLRAQILELEVSASQKRLMKSEIEKNISQKRNTLRQCLDRLKDMENTNTKLLQALRNSGTEKIFEAYHWLQEHRHEFKKEVYGPVLLEVNVSNRIHADYLEGHIPSYVWKSFITQDSEDRDIMVKNLGSFGVPVLNYVGGERRTNQHFELSEEVRAFGIYSRLDQIFEAPAAVKEVLTMQFGLEHSFIGSKVTDQKADEVSKLGILDFWTPDNHYRWSRSRYGGHMSGSVEPVDRSRLLLCNLDAGEIDGLRSRKNELEQSVSALEENCKSCQNELRLIEDEEAKLRKHRDDILNTVQHEKRKRREMENRIDQRKKKLESMEREDDLDTVVAKLVDQAANFNIQRFHCVIEIKHLLLEAVSYRQGLTKNHMASIEIEAKIRELEVNLKQHEKVALQASVQFEYCKKEVEDYRQQLSAAKKFAESIAEITPDLEKEFLEMPTTIEELEAAIQDNVSQANSILFLNHNVLEEYEHRQNQINTIARKLEADKHELRKCMAEVEELKANWLPTLRRLVSQINESFSRNFQEMAVAGEVLLDEHDMDFDQFGILIKVKFRQAGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQTNTPQCFLLTPKLLPELEYSEACSILNIMNGPWIEQPSRAWSNGDSWGTLMNYVGESRC 1053
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4062580 4082540 + CrPI670011_09g004210.1 Cre09g0421 507089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0421 1053 Coils Coil 248 289 - -
Cre09g0421 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 293 IPR027417 -
Cre09g0421 1053 FunFam Structural maintenance of chromosomes 5 849 1020 - -
Cre09g0421 1053 Gene3D - 585 706 - -
Cre09g0421 1053 Coils Coil 842 879 - -
Cre09g0421 1053 Gene3D - 24 221 IPR027417 -
Cre09g0421 1053 Coils Coil 747 774 - -
Cre09g0421 1053 Coils Coil 622 698 - -
Cre09g0421 1053 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1 1045 IPR027131 GO:0000724(PANTHER)|GO:0000724(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006281(InterPro)|GO:0016887(InterPro)|GO:0030915(InterPro)|GO:0030915(PANTHER)
Cre09g0421 1053 Coils Coil 329 356 - -
Cre09g0421 1053 Coils Coil 209 229 - -
Cre09g0421 1053 Pfam RecF/RecN/SMC N terminal domain 25 993 IPR003395 -
Cre09g0421 1053 Coils Coil 401 428 - -
Cre09g0421 1053 Gene3D - 847 1022 IPR027417 -
Cre09g0421 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 749 1004 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g2019 Cre-Chr7:35794626 Cre09g0421 Cre-Chr9:4062580 1.40E-17 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0421 K22803 - csv:101210248 1983.76