Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g0443 ATGCGTATTACAAAGGAAGTAGGAAGCTTTGAGGACTTGTTTCCGTTCTACGAAGTTGATCGGAACATTGAGGACTTGTTTCCGTCGAATTTGATATCTGATCGACGTTGGCGCATCCATGGTATCCAGAAGGCTGCTGATAACAGCAGCATGTACCAAGTAAAAGCTTCAGCAGGAACTGATGAAGGCTATCACAAACGGCAAACTGCACCTAAAAGTCCTCCAATAGTGAAAATGCGGCCCATTGAAGTCCCTGCCATATCATTTGAGGAACTGAAGGAGGTTACGAAAAATTTCGATGCTGACTGTTTGATTGGAGAGGGTTCCTACGGTAGAGTATACTATGGGGTATTTACAAGTGGGCAGACTGTGGGAATCAAAAAGTTGGATGCCAGCAAACAATCAGATGATGAATTCTTATCCCAGGTCTCCATGGTTTCAAGACTAAAGCACAATAATTTTCTAAACTTGATTGGGTACTGTGTTGATGGCAATTCTCGAATTCTTGCATATGAGTATGCTTCAAATGGATCTCTTCACGACATTTTACACGGGAGGAAAGGAGTCAAAGGAGCACAACCTGGCCCTGTTCTTTCCTGGGCACAGAGAGTAAAAATTGCTGTAGGTGCTGCAAAGGGTTTGGAGTATTTGCATGAAAAGGTCGATCCTCATATCATCCATCGGGACATAAAATCCAGCAACGTACTAATATTTGATGATGATTTGGCAAAAATTGCTGACTTTGATTTGTCAAACCAAGCCCCTGATATGGCTGCACGGCTTCATTCCACCCGTGTTCTTGGAACCTTTGGCTATCATGCTCCTGAATACGCAATGACTGGACAATTGAATGCCAAGAGTGATGTGTACAGCTTTGGTGTTGTCCTGCTTGAACTTTTGACAGGAAGAAAGCCAGTTGATCATACATTGCCTCGAGGACAGCAAAGCCTCGTGACATGGGCCACGCCCAAACTTTGCGAGGATAAAGTTAAGCAATGTGTTGATGCAAAACTAGGAGATGAGTACCCTCCAAAGTCAGTTGCAAAGTTTGCAGCGGTTGCTGCATTGTGCGTTCAATATGAAGCAGATTTCAGACCAAACATGAGTATTGTGGTCAAAGCCCTGCAGCCTCTGTTAAATGTCCGACCTGGTCCTGGCGGTGAAGCACAACTCTTTAAACACCAAGCTCAACTTAAAATTCTTGAGAACAAATCAATGGAAGTTAAGCATATGCTAACTGGCCGTAAGGGGCCGGAAGAGAGAGAAAATGAAGAGCGCGCCAATAAAACGTCCGACATTATAATCATTCTCACTTCCTTCACTCTTCTGCCGTCGCTCATCCGCCGTCGCCGTCGCATTTTCGGAGCTTCAGTGAAGCCATAA 1383 44.47 MRITKEVGSFEDLFPFYEVDRNIEDLFPSNLISDRRWRIHGIQKAADNSSMYQVKASAGTDEGYHKRQTAPKSPPIVKMRPIEVPAISFEELKEVTKNFDADCLIGEGSYGRVYYGVFTSGQTVGIKKLDASKQSDDEFLSQVSMVSRLKHNNFLNLIGYCVDGNSRILAYEYASNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAAKGLEYLHEKVDPHIIHRDIKSSNVLIFDDDLAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLCEDKVKQCVDAKLGDEYPPKSVAKFAAVAALCVQYEADFRPNMSIVVKALQPLLNVRPGPGGEAQLFKHQAQLKILENKSMEVKHMLTGRKGPEERENEERANKTSDIIIILTSFTLLPSLIRRRRRIFGASVKP 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4265720 4279099 - CrPI670011_09g004430.1 Cre09g0443 507111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g0443 460 CDD STKc_IRAK 105 378 - -
Cre09g0443 460 Pfam Protein tyrosine and serine/threonine kinase 104 375 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre09g0443 460 SUPERFAMILY Protein kinase-like (PK-like) 74 375 IPR011009 -
Cre09g0443 460 Gene3D Phosphorylase Kinase; domain 1 60 173 - -
Cre09g0443 460 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 57 381 IPR052101 -
Cre09g0443 460 FunFam pto-interacting protein 1 175 386 - -
Cre09g0443 460 Gene3D Transferase(Phosphotransferase) domain 1 174 383 - -
Cre09g0443 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre09g0443 460 ProSiteProfiles Protein kinase domain profile. 99 379 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g0443 460 SMART serkin_6 99 379 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0416 Cre-Chr8:13977825 Cre09g0443 Cre-Chr9:4265720 2.20E-136 dispersed
Cre09g0443 Cre-Chr9:4265720 Cre10g1883 Cre-Chr10:33411964 2.80E-132 dispersed
Cre10g1337 Cre-Chr10:26934297 Cre09g0443 Cre-Chr9:4265720 1.40E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64387 PF07714 PK_Tyr_Ser-Thr 3.00E-44 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g0443 K13436 - csv:101215263 669.463