Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre09g0461 | ATGGTGGCTGAAGCTGAGGTTGTTGTTTGTTCGAAGAGCCTCCCGGTTTTGGAGGTCCCGTATTTCGGTAAAGAGACTCATCTTGTGGATGAAATTGAGTCCATCGATGGTGGGATTTCCATTGATCCGACTCTCAATCGTGTTCGTGCTTCCGAATCTGTTTGTTCCAGTTCTAAATCGGATATTAAACCCATGAAGAAAATTCCAGATTCCGACGTCGATACGGAGAACGGAAGGGAATTTCCGAGCCTCCGGTCGGGGAGCTTTGCTGATATTGGCCCTAGGAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCTTCACATTTAGGATCGCTCTTTAAGTTTCCCAAGCCAAGTGCTTTCTATGGGGTATTCGATGGACATGGAGGTCCTGAAGCAGCAGCTTATATCAGAAAGAATGTTCTTAGACTCTTTTTTGAGGATGTTAGTTTTCCTCAAATTCCAGATATTGGTGAAGTCTTGCCGGAGGAGATAGAAAATTGTCTCCGAAAAGCATTTCTTCTAGCTGATCGAGCTCTGGCTGATGATTCCAGTGTCAGTAGTTCATCCGGGACAACGGCCCTGACAGCTCTTGTGCTTGGAAGGCATTTAATGGTGGCGAATGCTGGAGATTGCCGAGCTGTTCTCAGCCGGAATGGGGAGGCAGTAGATATGTCTCAAGACCACCGGCCAGTTTATTCTCCAGAGAAGCAACGGGTAGAAGAGTTGGGTGGGTTTGTTGATGGTGGCTATCTCAACGGCGTTTTATCGGTTTCCAGGGCTTTGGGGGATTGGGACATGAAGCTCCCTGATGGTTCTCCTTCGCCTCTCATTGCAGAACCAGAATGCAGGCAGGTGGTGCTTACAGAAGAGGATGAGTTCTTGATCATAGCCTGTGATGGGATTTGGGACGTGATGTCGAGCCAACAAGCAGTCAATGTAGTTCGACAGGGGCTTCAACGTCATGATGACCCTGAGCGGTGTGCTCGAGACCTCGTCCTTCAGGCTTTGCGACTAGACTCATTCGACAACCTCACTGTTGTTGTTGTTTGCTTCTCCAGTTTCCATCCTGGCAATTCTCCACGACCACAGCAGCGGAACTTAAGATACTGCAGTCTCTCTGCACAGGCTCTTTGTAGCTTGCAAAGATGGCTGGATAACAGTGGATGCCAATGA | 1185 | 47.93 | MVAEAEVVVCSKSLPVLEVPYFGKETHLVDEIESIDGGISIDPTLNRVRASESVCSSSKSDIKPMKKIPDSDVDTENGREFPSLRSGSFADIGPRRYMEDEHIRIDDLSSHLGSLFKFPKPSAFYGVFDGHGGPEAAAYIRKNVLRLFFEDVSFPQIPDIGEVLPEEIENCLRKAFLLADRALADDSSVSSSSGTTALTALVLGRHLMVANAGDCRAVLSRNGEAVDMSQDHRPVYSPEKQRVEELGGFVDGGYLNGVLSVSRALGDWDMKLPDGSPSPLIAEPECRQVVLTEEDEFLIIACDGIWDVMSSQQAVNVVRQGLQRHDDPERCARDLVLQALRLDSFDNLTVVVVCFSSFHPGNSPRPQQRNLRYCSLSAQALCSLQRWLDNSGCQ | 394 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 4379641 | 4381329 | - | CrPI670011_09g004610.1 | Cre09g0461 | 507129 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre09g0461 | 394 | CDD | PP2Cc | 85 | 355 | IPR001932 | - | |
| Cre09g0461 | 394 | Gene3D | - | 65 | 359 | IPR036457 | - | |
| Cre09g0461 | 394 | ProSiteProfiles | PPM-type phosphatase domain profile. | 85 | 355 | IPR001932 | - | |
| Cre09g0461 | 394 | MobiDBLite | consensus disorder prediction | 63 | 79 | - | - | |
| Cre09g0461 | 394 | ProSitePatterns | PPM-type phosphatase domain signature. | 124 | 132 | IPR000222 | GO:0043169(InterPro) | |
| Cre09g0461 | 394 | SMART | PP2C_4 | 75 | 353 | IPR001932 | - | |
| Cre09g0461 | 394 | MobiDBLite | consensus disorder prediction | 59 | 79 | - | - | |
| Cre09g0461 | 394 | Pfam | Protein phosphatase 2C | 95 | 347 | IPR001932 | - | |
| Cre09g0461 | 394 | FunFam | Probable protein phosphatase 2C 22 | 70 | 358 | - | - | |
| Cre09g0461 | 394 | PANTHER | PROTEIN PHOSPHATASE 2C | 68 | 355 | IPR015655 | GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro) | |
| Cre09g0461 | 394 | SMART | PP2C_SIG_2 | 100 | 355 | IPR001932 | - | |
| Cre09g0461 | 394 | SUPERFAMILY | PP2C-like | 80 | 357 | IPR036457 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre09g0318 | Cre-Chr9:3085469 | Cre09g0461 | Cre-Chr9:4379641 | 3.10E-33 | dispersed | |
| Cre09g0461 | Cre-Chr9:4379641 | Cre11g1835 | Cre-Chr11:29988373 | 5.20E-34 | dispersed | |
| Cre02g2032 | Cre-Chr2:33842707 | Cre09g0461 | Cre-Chr9:4379641 | 7.90E-72 | transposed | |
| Cre10g1758 | Cre-Chr10:31973331 | Cre09g0461 | Cre-Chr9:4379641 | 1.80E-30 | transposed | |
| Cre11g2280 | Cre-Chr11:34511999 | Cre09g0461 | Cre-Chr9:4379641 | 1.50E-89 | transposed | |
| Cre06g1191 | Cre-Chr6:5767442 | Cre09g0461 | Cre-Chr9:4379641 | 7.60E-105 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre09g0461 | K14803 | - | csv:101216626 | 712.605 |